RchiOBHm_Chr5g0069771

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000140
Physical Location & Seq
Forward (+)
75613441 .. 75615074
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34514

Sequence Viewer

Length: 1233 bp
ATGGATACCAATTCTCGGATAGTTAAACCCGAAAAACAAAAGTTGGATGGAGGAGAAGAGATTGAAGGAGGCAGCAAGAGTTTTGGCTATTTACCTGAGGAACTTATTAAATACATTCTGTCCTTGCTTCCAACAGAAGATCTTATCAAAACAAGCGTTTTGTGTAAAAAGTGGGAGTACCTATGGACATCGTTTTCCAAGTTTAGTTTTGTTCAAGGGTCGTCTGATGATAATAGATCTTCTTTCTTGAAAGCTGTGGATAGAGCACTTATTCTTCGGGATGCAGATATAGAACAGTTCAGTCTTTCGTTTACAGTGAAGAAGGGTGATGCATCTCGTGTTAGTTCGTGGACTTCTGGCTTAGTCTGGCGCAACGTTGAAAAGCTTTCTCTTGCTCTTGATGGGGCTAGGTCAACATTTTCGTTGGCTCCGTGTTTATTTACTTGTGCGACACTGAGGGACTTAGAACTATATATCCCTAGTAAATTGAAAGTTCCTGCTACTGTTTGTTTCCCATGTCTAAGGAGATTGTCTCTGAACTCTGTGTTGCAGCTTTTCGGACGTTGTTGTCAGATTATGGTAAATGGAGTCGGTCTCAAATATTTTCAGTACAAGGGCGGGTTCCTAAATGATTATTACTTTTATAACTCATCGGTAGATAAGGCTGAGATTCTTATTCCTACTTCGAGATTGAGACATGTGAGTTACCGGTTGTATAAGCTGCTTCGGGAGTTCTCTAGTATGAAAATTTTTACTACCTCTTCTTCATCCTTTAAGGTGGTTCAGACTAATGCATCAGAACTTCTCGCCCAGATGCCCTTGTTTAGTAATCTAGCCACTTTGATATTTGAAGAAAAGGAAGTAAATATTGGTTGTAAGGGACTACTGAGGATGTTCCAAAACTGTCCTTCTCTCCAAACTCTAGTATGCAGTGAGGGCATTACGCTGTCCTCCGATGATGCAGAAGATGATGGGGTGTTAGAGCCACTGCCTCCTTGTTTCTTGAAAAGTCTTAAAAAGATTGAAGTTCATGCGTTTCTTGGAAACCAGGAAGAGCTTGATGCATTAAAGGTTCTGTTAAAGAATGCAATGGTCTTGGAGAAGCTGATTATAACTTGCTCCGATTCTTTTCAAGGCAGACCGGAGAAGTTGAGGGATGTTAACAATCAGTTAGCAGATTTACCTAGAGGCTCATCCAAATGCTGTGAAGTTATTTGTTCGTTGAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

410

Amino Acids

46.0

Weight (kDa)

8.08

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 31 - 68 7.2e-09 F-box domain
FBD PF08387 330 - 371 2.3e-09 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 645, 1112
AasI GACNNNNNNGTC 1 cut(s) 567
AciI CCGC 1 cut(s) 618
AclI AACGTT 1 cut(s) 375
AcsI RAATTY 1 cut(s) 747
AfaI GTAC 2 cut(s) 179, 611
AfiI CCNNNNNNNGG 1 cut(s) 15
AflIII ACRYGT 1 cut(s) 697
AgeI ACCGGT 1 cut(s) 708
AgsI TTSAA 9 cut(s) 65, 215, 250, 380, 490, 851, 1006, 1025, 1133
AjnI CCWGG 1 cut(s) 1047
AjuI GAANNNNNNNTTGG 2 cut(s) 852, 884
AloI GAACNNNNNNTCC 2 cut(s) 459, 491
AluBI AGCT 6 cut(s) 254, 385, 553, 721, 1057, 1105
AluI AGCT 6 cut(s) 254, 385, 553, 721, 1057, 1105
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 3 cut(s) 537, 599, 688
ApeKI GCWGC 3 cut(s) 72, 550, 721
ApoI RAATTY 1 cut(s) 747
AsiGI ACCGGT 1 cut(s) 708
AspLEI GCGC 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 338
AxyI CCTNAGG 1 cut(s) 96
BanII GRGCYC 1 cut(s) 1229
BauI CACGAG 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 3 cut(s) 84, 562, 708
BccI CCATC 3 cut(s) 41, 395, 965
BciT130I CCWGG 1 cut(s) 1049
BcoDI GTCTC 3 cut(s) 537, 599, 688
BfaI CTAG 6 cut(s) 408, 480, 738, 833, 923, 1185
BglII AGATCT 2 cut(s) 139, 236
BisI GCNGC 3 cut(s) 73, 551, 722
BlsI GCNGC 3 cut(s) 74, 552, 723
Bme1390I CCNGG 1 cut(s) 1049
BmiI GGNNCC 2 cut(s) 429, 623
BmrFI CCNGG 1 cut(s) 1049
BmsI GCATC 7 cut(s) 271, 319, 341, 803, 804, 949, 1051
BplI GAGNNNNNCTC 4 cut(s) 517, 549, 579, 611
BsaI GGTCTC 1 cut(s) 599
BsaWI WCCGGW 2 cut(s) 708, 1141
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 708
Bse21I CCTNAGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 1095
BseBI CCWGG 1 cut(s) 1049
BseGI GGATG 6 cut(s) 52, 286, 767, 897, 1162, 1193
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 1095
BseMII CTCAG 4 cut(s) 87, 446, 657, 878
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 3 cut(s) 84, 562, 708
BshTI ACCGGT 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 2 cut(s) 709, 1142
BslFI GGGAC 2 cut(s) 473, 894
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 3 cut(s) 537, 599, 688
BsmFI GGGAC 2 cut(s) 473, 894
BsmI GAATGC 1 cut(s) 1090
Bso31I GGTCTC 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 268, 1229
Bsp143I GATC 2 cut(s) 139, 236
BspACI CCGC 1 cut(s) 618
BspCNI CTCAG 4 cut(s) 88, 447, 658, 879
BspLI GGNNCC 2 cut(s) 429, 623
BspQI GCTCTTC 1 cut(s) 1047
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 1095
BsrFI RCCGGY 1 cut(s) 708
BssAI RCCGGY 1 cut(s) 708
BssMI GATC 2 cut(s) 139, 236
BssSI CACGAG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 1049
Bst4CI ACNGT 4 cut(s) 297, 316, 505, 905
Bst6I CTCTTC 3 cut(s) 51, 766, 1047
BstDEI CTNAG 7 cut(s) 96, 361, 455, 463, 521, 666, 887
BstF5I GGATG 6 cut(s) 52, 286, 767, 897, 1162, 1193
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 2 cut(s) 142, 239
BstMAI GTCTC 3 cut(s) 537, 599, 688
BstMBI GATC 2 cut(s) 139, 236
BstMWI GCNNNNNNNGC 1 cut(s) 936
BstNI CCWGG 1 cut(s) 1049
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 1047
BstV1I GCAGC 3 cut(s) 84, 562, 708
BstX2I RGATCY 2 cut(s) 139, 236
BstYI RGATCY 2 cut(s) 139, 236
Bsu36I CCTNAGG 1 cut(s) 96
BtsCI GGATG 6 cut(s) 52, 286, 767, 897, 1162, 1193
BtsI GCAGTG 2 cut(s) 937, 986
BtsIMutI CAGTG 4 cut(s) 321, 452, 937, 986
CfoI GCGC 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 708
Csp6I GTAC 2 cut(s) 178, 610
CspAI ACCGGT 1 cut(s) 708
CviAII CATG 3 cut(s) 516, 698, 1031
CviQI GTAC 2 cut(s) 178, 610
DdeI CTNAG 7 cut(s) 96, 361, 455, 463, 521, 666, 887
DpnI GATC 2 cut(s) 141, 238
DpnII GATC 2 cut(s) 139, 236
DrdI GACNNNNNNGTC 1 cut(s) 567
DseDI GACNNNNNNGTC 1 cut(s) 567
Eam1104I CTCTTC 3 cut(s) 51, 766, 1047
EarI CTCTTC 3 cut(s) 51, 766, 1047
Eco24I GRGCYC 1 cut(s) 1229
Eco31I GGTCTC 1 cut(s) 599
Eco81I CCTNAGG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 1047
EcoT22I ATGCAT 3 cut(s) 334, 796, 1066
EcoT38I GRGCYC 1 cut(s) 1229
FaeI CATG 3 cut(s) 519, 701, 1034
FaqI GGGAC 2 cut(s) 473, 894
FatI CATG 3 cut(s) 515, 697, 1030
FauI CCCGC 1 cut(s) 611
Fnu4HI GCNGC 3 cut(s) 73, 551, 722
FokI GGATG 6 cut(s) 59, 293, 754, 904, 1169, 1180
FriOI GRGCYC 1 cut(s) 1229
Fsp4HI GCNGC 3 cut(s) 73, 551, 722
FspBI CTAG 6 cut(s) 408, 480, 738, 833, 923, 1185
GlaI GCGC 1 cut(s) 371
GluI GCNGC 3 cut(s) 73, 551, 722
HapII CCGG 2 cut(s) 709, 1142
HhaI GCGC 1 cut(s) 372
Hin1II CATG 3 cut(s) 519, 701, 1034
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HincII GTYRAC 2 cut(s) 414, 1162
HindII GTYRAC 2 cut(s) 414, 1162
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 3 cut(s) 588, 670, 1124
HpaI GTTAAC 1 cut(s) 1162
HpaII CCGG 2 cut(s) 709, 1142
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 4 cut(s) 312, 351, 414, 1162
Hpy188I TCNGA 9 cut(s) 18, 226, 537, 560, 573, 786, 799, 955, 1123
Hpy188III TCNNGA 6 cut(s) 247, 278, 398, 687, 728, 1003
Hpy8I GTNNAC 4 cut(s) 312, 351, 414, 1162
HpyAV CCTTC 3 cut(s) 59, 316, 918
HpyCH4III ACNGT 4 cut(s) 297, 316, 505, 905
HpyCH4IV ACGT 2 cut(s) 375, 562
HpyCH4V TGCA 8 cut(s) 284, 332, 550, 794, 930, 962, 1064, 1088
HpyF10VI GCNNNNNNNGC 1 cut(s) 936
HpyF3I CTNAG 7 cut(s) 96, 361, 455, 463, 521, 666, 887
HpySE526I ACGT 2 cut(s) 375, 562
Hsp92II CATG 3 cut(s) 519, 701, 1034
HspAI GCGC 1 cut(s) 370
KspAI GTTAAC 1 cut(s) 1162
Kzo9I GATC 2 cut(s) 139, 236
LguI GCTCTTC 1 cut(s) 1047
LmnI GCTCC 2 cut(s) 433, 1124
LpnPI CCDG 9 cut(s) 108, 342, 352, 510, 722, 824, 1034, 1061, 1155
Lsp1109I GCAGC 3 cut(s) 84, 562, 708
LweI GCATC 7 cut(s) 271, 319, 341, 803, 804, 949, 1051
MaeI CTAG 6 cut(s) 408, 480, 738, 833, 923, 1185
MaeII ACGT 2 cut(s) 375, 562
MaeIII GTNAC 1 cut(s) 704
MalI GATC 2 cut(s) 141, 238
MboI GATC 2 cut(s) 139, 236
MflI RGATCY 2 cut(s) 139, 236
MhlI GDGCHC 2 cut(s) 268, 1229
MluCI AATT 3 cut(s) 10, 485, 747
MlyI GAGTC 1 cut(s) 597
MmeI TCCRAC 2 cut(s) 24, 155
Mph1103I ATGCAT 3 cut(s) 334, 796, 1066
MseI TTAA 7 cut(s) 24, 108, 774, 1014, 1067, 1079, 1161
MslI CAYNNNNRTG 1 cut(s) 1198
MspI CCGG 2 cut(s) 709, 1142
MspR9I CCNGG 1 cut(s) 1049
Mva1269I GAATGC 1 cut(s) 1090
MvaI CCWGG 1 cut(s) 1049
MwoI GCNNNNNNNGC 1 cut(s) 936
NdeII GATC 2 cut(s) 139, 236
NlaIII CATG 3 cut(s) 519, 701, 1034
NlaIV GGNNCC 2 cut(s) 429, 623
NsiI ATGCAT 3 cut(s) 334, 796, 1066
NspI RCATGY 1 cut(s) 701
PciI ACATGT 1 cut(s) 697
PciSI GCTCTTC 1 cut(s) 1047
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PctI GAATGC 1 cut(s) 1090
PfeI GAWTC 2 cut(s) 670, 1124
PinAI ACCGGT 1 cut(s) 708
PkrI GCNGC 3 cut(s) 74, 552, 723
PleI GAGTC 1 cut(s) 596
PpsI GAGTC 1 cut(s) 596
PscI ACATGT 1 cut(s) 697
PsiI TTATAA 2 cut(s) 645, 1112
Psp1406I AACGTT 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 1047
PspGI CCWGG 1 cut(s) 1047
PspN4I GGNNCC 2 cut(s) 429, 623
PsuI RGATCY 2 cut(s) 139, 236
RsaI GTAC 2 cut(s) 179, 611
RsaNI GTAC 2 cut(s) 178, 610
RseI CAYNNNNRTG 1 cut(s) 1198
SapI GCTCTTC 1 cut(s) 1047
SaqAI TTAA 7 cut(s) 24, 108, 774, 1014, 1067, 1079, 1161
SatI GCNGC 3 cut(s) 73, 551, 722
Sau3AI GATC 2 cut(s) 139, 236
SchI GAGTC 1 cut(s) 597
ScrFI CCNGG 1 cut(s) 1049
SduI GDGCHC 2 cut(s) 268, 1229
SfaNI GCATC 7 cut(s) 271, 319, 341, 803, 804, 949, 1051
SmiMI CAYNNNNRTG 1 cut(s) 1198
Sse9I AATT 3 cut(s) 10, 485, 747
SsiI CCGC 1 cut(s) 618
SspI AATATT 2 cut(s) 602, 868
SspMI CTAG 6 cut(s) 408, 480, 738, 833, 923, 1185
StyD4I CCNGG 1 cut(s) 1047
TaaI ACNGT 4 cut(s) 297, 316, 505, 905
TaiI ACGT 2 cut(s) 378, 565
TaqI TCGA 1 cut(s) 686
TaqII GACCGA 1 cut(s) 581
TasI AATT 3 cut(s) 10, 485, 747
TatI WGTACW 1 cut(s) 609
TfiI GAWTC 2 cut(s) 670, 1124
Tru1I TTAA 7 cut(s) 24, 108, 774, 1014, 1067, 1079, 1161
Tru9I TTAA 7 cut(s) 24, 108, 774, 1014, 1067, 1079, 1161
TscAI CASTG 4 cut(s) 321, 459, 937, 993
TseI GCWGC 3 cut(s) 72, 550, 721
TspDTI ATGAA 3 cut(s) 756, 758, 1019
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 4 cut(s) 321, 459, 937, 993
XapI RAATTY 1 cut(s) 747
XceI RCATGY 1 cut(s) 701
XspI CTAG 6 cut(s) 408, 480, 738, 833, 923, 1185
Zsp2I ATGCAT 3 cut(s) 334, 796, 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.