Rorug05G0400100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000140
Physical Location & Seq
Forward (+)
54984073 .. 54985092
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0400100.1

Sequence Viewer

Length: 408 bp
ATGTTTTTGTGCACTGTTCTGTTGTGGCATGTTATGGCAGAGATTGTTTATGGACGCTGGGTTGAGCTGGGCTGCTTCACAGAGTTAGCTGGTCTCTTATGTGGTCATTGTTCTGCTTTCAGTAAAAGGAAGAAGGCCAAAGTTCTTTGGGGTTACTGTGTTTTGGGAATGATATATAGTTCTACTTCGGTAGTCTTAATGGCACTATCACGGAATGCTATTGTTGCTACTGGCTTGGTAGTTTTCGCATCTGCGGGGTTGGCATTTCCCTTTTACATGGCGTCATCAAAAACGCCTGTTATCGATCCAACAAAGCCACTGTCACCTCAGGCAACTTTTCGAGGGCCTTATATAAACACTGGTTCGCGTGATGTTGGACCTGATCGTCAGACCTACCCTAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

135

Amino Acids

14.78

Weight (kDa)

9.48

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 384
AccII CGCG 1 cut(s) 367
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 281
AluBI AGCT 2 cut(s) 67, 89
AluI AGCT 2 cut(s) 67, 89
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 98
Alw44I GTGCAC 1 cut(s) 10
AlwI GGATC 1 cut(s) 299
AoxI GGCC 2 cut(s) 135, 344
ApaLI GTGCAC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 72
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspS9I GGNCC 2 cut(s) 344, 377
AsuHPI GGTGA 1 cut(s) 315
AvaII GGWCC 1 cut(s) 377
AxyI CCTNAGG 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 98
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 344, 377
BmsI GCATC 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 235, 364
Bse21I CCTNAGG 1 cut(s) 327
BseCI ATCGAT 1 cut(s) 303
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 235, 364
BseSI GKGCMC 1 cut(s) 14
BseXI GCAGC 1 cut(s) 59
BseYI CCCAGC 2 cut(s) 57, 67
Bsh1236I CGCG 1 cut(s) 367
BshFI GGCC 2 cut(s) 137, 346
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 2 cut(s) 137, 346
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 2 cut(s) 304, 382
BspACI CCGC 1 cut(s) 254
BspANI GGCC 2 cut(s) 137, 346
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 1 cut(s) 367
BspPI GGATC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 98
BsrI ACTGG 2 cut(s) 235, 364
BssMI GATC 2 cut(s) 304, 382
BssNI GRCGYC 1 cut(s) 281
Bst4CI ACNGT 3 cut(s) 16, 158, 321
BstACI GRCGYC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 327, 399
BstFNI CGCG 1 cut(s) 367
BstKTI GATC 2 cut(s) 307, 385
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 2 cut(s) 304, 382
BstMWI GCNNNNNNNGC 2 cut(s) 224, 260
BstNSI RCATGY 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 14
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 59
Bsu15I ATCGAT 1 cut(s) 303
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 2 cut(s) 137, 346
BsuTUI ATCGAT 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 12, 317, 357
Cfr13I GGNCC 2 cut(s) 344, 377
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 2 cut(s) 63, 270
CviAII CATG 2 cut(s) 29, 277
CviJI RGCY 7 cut(s) 67, 72, 89, 137, 234, 316, 346
CviKI_1 RGCY 7 cut(s) 67, 72, 89, 137, 234, 316, 346
DdeI CTNAG 2 cut(s) 327, 399
DpnI GATC 2 cut(s) 306, 384
DpnII GATC 2 cut(s) 304, 382
DrdI GACNNNNNNGTC 1 cut(s) 384
DseDI GACNNNNNNGTC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 377
Eco81I CCTNAGG 1 cut(s) 327
EcoO109I RGGNCCY 1 cut(s) 344
FaeI CATG 2 cut(s) 32, 280
FaiI YATR 9 cut(s) 30, 35, 51, 100, 175, 177, 278, 351, 353
FatI CATG 2 cut(s) 28, 276
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 73
GsaI CCCAGC 2 cut(s) 61, 71
HaeIII GGCC 2 cut(s) 137, 346
HgaI GACGC 2 cut(s) 63, 270
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 2 cut(s) 32, 280
HphI GGTGA 1 cut(s) 315
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 390
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 3 cut(s) 16, 158, 321
HpyCH4V TGCA 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 260
HpyF3I CTNAG 2 cut(s) 327, 399
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 2 cut(s) 32, 280
Kzo9I GATC 2 cut(s) 304, 382
LpnPI CCDG 8 cut(s) 43, 53, 75, 216, 309, 314, 345, 393
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 152, 321
MalI GATC 2 cut(s) 306, 384
MboI GATC 2 cut(s) 304, 382
MboII GAAGA 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 332, 355
MnlI CCTC 2 cut(s) 335, 336
MseI TTAA 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 220
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 2 cut(s) 224, 260
NdeII GATC 2 cut(s) 304, 382
NlaIII CATG 2 cut(s) 32, 280
NmuCI GTSAC 1 cut(s) 321
NspI RCATGY 1 cut(s) 32
PctI GAATGC 1 cut(s) 220
PkrI GCNGC 1 cut(s) 74
PspFI CCCAGC 2 cut(s) 57, 67
PspPI GGNCC 2 cut(s) 344, 377
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 2 cut(s) 304, 382
Sau96I GGNCC 2 cut(s) 344, 377
SduI GDGCHC 1 cut(s) 14
SetI ASST 5 cut(s) 69, 91, 328, 382, 395
SfaNI GCATC 1 cut(s) 257
SinI GGWCC 1 cut(s) 377
SsiI CCGC 1 cut(s) 254
TaaI ACNGT 3 cut(s) 16, 158, 321
TaqI TCGA 2 cut(s) 303, 340
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 3 cut(s) 19, 324, 364
TseFI GTSAC 1 cut(s) 321
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 3 cut(s) 19, 324, 364
VneI GTGCAC 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 377
XceI RCATGY 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.