RLG00000036088

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000140
Physical Location & Seq
Forward (+)
75637627 .. 75640131
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036088

Sequence Viewer

Length: 1068 bp
ATGGCTGCAAGGTTCCCTTTGCCAAGGAGTCCCAAGATAAGGCACAACGTTGAGGTCCTTTCCATTTGTCTGTATGGATTCAAGGAACCATTGAAGGAACCAAATTTGTTGCCTTGTTCTTTATTTACCTCTTCAACACTGAAGGAGTTAGAACTGGGTCTGCCCTGTATTTTCAAGGTTCCTTGTACTGTTTGCTTCTCAAGCCTAAGGAGCTTGACTCTTACGTTGTTGGTGTTTTCTGATGACTGCTCGACCCAGAAGCTTTTTTCTGGTTGCCCAGTGCTTGAGGAATTAACTCTGCAAGATTGCAATTGGGCCAATCTCAAGTTTGTGAGTATTTGTGCTCCCAAGCTTTTGACATTGAGCATAAATGAAATGGATCTGCAATATCCACGAGGTTCAGATGGTTGCCAGATTATGGTATTTAGTGATAGTCTCAAAGATTTATCTTATGTGGGTCGGTTCCAAAATGACTATTGCTTTTATAACTTATCATCACTAACTGAAGCTTACATTTGTCATAATGCCACTAAGAGCTTAAGACATCTTATTTACCGATTTTATAAGCTTCTTACGGCGCTCTCTAGTGTGAGGAACCTAACTATCTGTCATACTTTCTTTGAGGATTTTCAGACTAATGCACCAGAACTTCTTGACTGCATGCCTTTGTTCAATGATTTAACCACTTTGATATTGGAATCATCACCGGTAGATATTCGTAGTAAAGGACTATTGAGGTTACTCCAAAACTGTCCTTGCCTTCAAACTTTGATTTTCTGTGAGGGGATTAGCCTGTCGTCTGAATATGCAAAAGATGATGGGGTATTGGAGCCATGGCCTCCATGTTTCTTGGCAAGTCTTCAACTGATCAAAGTCAATACATTTTACGGAGACCTGGAGGAAATTCATGCATTAGAGGTTTTGCTAAAGAATGCTAAGGTCTTGGAGAAGATGAGTATAACTTGCTCCAATAATTTTCAAGGGACACCAGAGAAGAAAAGGGATGTTAACAAACAGTTATCAGATGTCCCCAAAGGATCAGAGAGTTGTGAAATTGTTCTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

356

Amino Acids

39.99

Weight (kDa)

5.52

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 27 - 123 2.2e-09 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 280 - 320 2.3e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 486, 564
AccB7I CCANNNNNTGG 1 cut(s) 418
AclI AACGTT 1 cut(s) 48
AclWI GGATC 2 cut(s) 387, 1045
AcsI RAATTY 2 cut(s) 103, 903
AcuI CTGAAG 2 cut(s) 161, 525
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 39, 418
AflII CTTAAG 1 cut(s) 538
AgeI ACCGGT 1 cut(s) 706
AgsI TTSAA 8 cut(s) 82, 94, 135, 175, 673, 764, 863, 980
AjnI CCWGG 1 cut(s) 894
AjuI GAANNNNNNNTTGG 1 cut(s) 1044
AluBI AGCT 6 cut(s) 213, 262, 352, 509, 537, 568
AluI AGCT 6 cut(s) 213, 262, 352, 509, 537, 568
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 2 cut(s) 440, 885
AlwI GGATC 2 cut(s) 387, 1045
AoxI GGCC 2 cut(s) 315, 836
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 103, 903
AsiGI ACCGGT 1 cut(s) 706
Asp700I GAANNNNTTC 1 cut(s) 1056
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 2 cut(s) 55, 315
AsuHPI GGTGA 1 cut(s) 696
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 206
BauI CACGAG 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 851
Bbv12I GWGCWC 1 cut(s) 346
BccI CCATC 2 cut(s) 398, 812
BceAI ACGGC 1 cut(s) 591
BciT130I CCWGG 1 cut(s) 896
BclI TGATCA 1 cut(s) 867
BcoDI GTCTC 2 cut(s) 440, 885
BfaI CTAG 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 581
BfrI CTTAAG 1 cut(s) 538
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 896
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 55, 315
BmiI GGNNCC 7 cut(s) 14, 87, 99, 180, 464, 596, 831
BmrFI CCNGG 1 cut(s) 896
BmrI ACTGGG 2 cut(s) 164, 272
BmuI ACTGGG 2 cut(s) 164, 272
BpiI GAAGAC 1 cut(s) 851
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpmI CTGGAG 1 cut(s) 917
Bpu10I CCTNAGC 1 cut(s) 936
BpuEI CTTGAG 3 cut(s) 184, 305, 308
BsaI GGTCTC 1 cut(s) 885
BsaJI CCNNGG 2 cut(s) 23, 833
BsaWI WCCGGW 1 cut(s) 706
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 418
Bse118I RCCGGY 1 cut(s) 706
Bse1I ACTGG 2 cut(s) 159, 278
Bse21I CCTNAGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 896
BseDI CCNNGG 2 cut(s) 23, 833
BseGI GGATG 1 cut(s) 1009
BseLI CCNNNNNNNGG 2 cut(s) 39, 418
BseNI ACTGG 2 cut(s) 159, 278
BshFI GGCC 2 cut(s) 317, 838
BshTI ACCGGT 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 707
BslFI GGGAC 3 cut(s) 15, 997, 1013
BslI CCNNNNNNNGG 2 cut(s) 39, 418
BsmAI GTCTC 2 cut(s) 440, 885
BsmFI GGGAC 3 cut(s) 15, 997, 1013
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 2 cut(s) 317, 838
Bso31I GGTCTC 1 cut(s) 885
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 3 cut(s) 379, 867, 1037
Bsp19I CCATGG 1 cut(s) 833
BspANI GGCC 2 cut(s) 317, 838
BspLI GGNNCC 7 cut(s) 14, 87, 99, 180, 464, 596, 831
BspPI GGATC 2 cut(s) 387, 1045
BspTI CTTAAG 1 cut(s) 538
BspTNI GGTCTC 1 cut(s) 885
BsrFI RCCGGY 1 cut(s) 706
BsrI ACTGG 2 cut(s) 159, 278
BssAI RCCGGY 1 cut(s) 706
BssECI CCNNGG 2 cut(s) 23, 833
BssMI GATC 3 cut(s) 379, 867, 1037
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 2 cut(s) 23, 833
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 896
Bst4CI ACNGT 3 cut(s) 190, 752, 1017
Bst6I CTCTTC 1 cut(s) 136
BstAFI CTTAAG 1 cut(s) 538
BstC8I GCNNGC 1 cut(s) 662
BstDEI CTNAG 3 cut(s) 206, 531, 936
BstDSI CCRYGG 1 cut(s) 833
BstF5I GGATG 1 cut(s) 1009
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 3 cut(s) 382, 870, 1040
BstMAI GTCTC 2 cut(s) 440, 885
BstMBI GATC 3 cut(s) 379, 867, 1037
BstMWI GCNNNNNNNGC 2 cut(s) 201, 210
BstNI CCWGG 1 cut(s) 896
BstNSI RCATGY 1 cut(s) 664
BstSCI CCNGG 1 cut(s) 894
BstV2I GAAGAC 1 cut(s) 851
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
Bsu36I CCTNAGG 1 cut(s) 206
BsuRI GGCC 2 cut(s) 317, 838
BtgI CCRYGG 1 cut(s) 833
BtsCI GGATG 1 cut(s) 1009
BtsIMutI CAGTG 2 cut(s) 137, 285
Cac8I GCNNGC 1 cut(s) 662
CfoI GCGC 1 cut(s) 580
Cfr10I RCCGGY 1 cut(s) 706
Cfr13I GGNCC 2 cut(s) 55, 315
Csp6I GTAC 1 cut(s) 186
CspAI ACCGGT 1 cut(s) 706
CviAII CATG 4 cut(s) 661, 834, 843, 908
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 3 cut(s) 206, 531, 936
DpnI GATC 3 cut(s) 381, 869, 1039
DpnII GATC 3 cut(s) 379, 867, 1037
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 23, 833
Eco31I GGTCTC 1 cut(s) 885
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 161, 525
Eco81I CCTNAGG 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 894
EcoT14I CCWWGG 2 cut(s) 23, 833
EcoT22I ATGCAT 1 cut(s) 913
ErhI CCWWGG 2 cut(s) 23, 833
FaeI CATG 4 cut(s) 664, 837, 846, 911
FalI AAGNNNNNCTT 1 cut(s) 33
FaqI GGGAC 3 cut(s) 15, 997, 1013
FatI CATG 4 cut(s) 660, 833, 842, 907
FbaI TGATCA 1 cut(s) 867
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 1016
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 585
GlaI GCGC 1 cut(s) 579
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 917
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 2 cut(s) 317, 838
HapII CCGG 1 cut(s) 707
HhaI GCGC 1 cut(s) 580
Hin1II CATG 4 cut(s) 664, 837, 846, 911
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HindIII AAGCTT 4 cut(s) 260, 350, 507, 566
HinfI GANTC 4 cut(s) 28, 78, 217, 698
HpaI GTTAAC 1 cut(s) 1009
HpaII CCGG 1 cut(s) 707
HphI GGTGA 1 cut(s) 696
Hpy166II GTNNAC 1 cut(s) 1009
Hpy188I TCNGA 6 cut(s) 241, 403, 633, 802, 1024, 1042
Hpy188III TCNNGA 1 cut(s) 653
Hpy8I GTNNAC 1 cut(s) 1009
HpyAV CCTTC 3 cut(s) 88, 136, 770
HpyCH4III ACNGT 3 cut(s) 190, 752, 1017
HpyCH4IV ACGT 2 cut(s) 48, 224
HpyCH4V TGCA 8 cut(s) 8, 301, 309, 385, 641, 660, 809, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 210
HpyF3I CTNAG 3 cut(s) 206, 531, 936
HpySE526I ACGT 2 cut(s) 48, 224
Hsp92II CATG 4 cut(s) 664, 837, 846, 911
HspAI GCGC 1 cut(s) 578
Ksp22I TGATCA 1 cut(s) 867
KspAI GTTAAC 1 cut(s) 1009
Kzo9I GATC 3 cut(s) 379, 867, 1037
LmnI GCTCC 4 cut(s) 210, 349, 829, 971
MaeI CTAG 1 cut(s) 585
MaeII ACGT 2 cut(s) 48, 224
MaeIII GTNAC 1 cut(s) 738
MalI GATC 3 cut(s) 381, 869, 1039
MboI GATC 3 cut(s) 379, 867, 1037
MboII GAAGA 4 cut(s) 123, 851, 961, 1006
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 6 cut(s) 103, 290, 310, 903, 973, 1053
MlyI GAGTC 2 cut(s) 37, 211
Mph1103I ATGCAT 1 cut(s) 913
MroXI GAANNNNTTC 1 cut(s) 1056
MseI TTAA 4 cut(s) 293, 539, 680, 1008
MspCI CTTAAG 1 cut(s) 538
MspI CCGG 1 cut(s) 707
MspR9I CCNGG 1 cut(s) 896
MunI CAATTG 1 cut(s) 310
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 1 cut(s) 896
MwoI GCNNNNNNNGC 2 cut(s) 201, 210
NcoI CCATGG 1 cut(s) 833
NdeII GATC 3 cut(s) 379, 867, 1037
NlaIII CATG 4 cut(s) 664, 837, 846, 911
NlaIV GGNNCC 7 cut(s) 14, 87, 99, 180, 464, 596, 831
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 1 cut(s) 664
PaeI GCATGC 1 cut(s) 664
PctI GAATGC 1 cut(s) 937
PdmI GAANNNNTTC 1 cut(s) 1056
PfeI GAWTC 2 cut(s) 78, 698
PflMI CCANNNNNTGG 1 cut(s) 418
PinAI ACCGGT 1 cut(s) 706
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 36, 211
PpsI GAGTC 2 cut(s) 36, 211
PpuMI RGGWCCY 1 cut(s) 55
PsiI TTATAA 2 cut(s) 486, 564
Psp1406I AACGTT 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 894
PspGI CCWGG 1 cut(s) 894
PspN4I GGNNCC 7 cut(s) 14, 87, 99, 180, 464, 596, 831
PspPI GGNCC 2 cut(s) 55, 315
PspPPI RGGWCCY 1 cut(s) 55
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 4 cut(s) 293, 539, 680, 1008
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 379, 867, 1037
Sau96I GGNCC 2 cut(s) 55, 315
SchI GAGTC 2 cut(s) 37, 211
ScrFI CCNGG 1 cut(s) 896
SduI GDGCHC 1 cut(s) 346
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 4 cut(s) 199, 284, 323, 538
SmoI CTYRAG 4 cut(s) 199, 284, 323, 538
SphI GCATGC 1 cut(s) 664
Sse9I AATT 6 cut(s) 103, 290, 310, 903, 973, 1053
SspMI CTAG 1 cut(s) 585
StyD4I CCNGG 1 cut(s) 894
StyI CCWWGG 2 cut(s) 23, 833
TaaI ACNGT 3 cut(s) 190, 752, 1017
TaiI ACGT 2 cut(s) 51, 227
TaqI TCGA 1 cut(s) 251
TasI AATT 6 cut(s) 103, 290, 310, 903, 973, 1053
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 2 cut(s) 78, 698
Tru1I TTAA 4 cut(s) 293, 539, 680, 1008
Tru9I TTAA 4 cut(s) 293, 539, 680, 1008
TscAI CASTG 2 cut(s) 144, 285
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 387, 896
TspGWI ACGGA 1 cut(s) 903
TspRI CASTG 2 cut(s) 144, 285
Van91I CCANNNNNTGG 1 cut(s) 418
Vha464I CTTAAG 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 2 cut(s) 103, 903
XceI RCATGY 1 cut(s) 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 1 cut(s) 585
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.