Rorug05G0400000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000140
Physical Location & Seq
Reverse (-)
54969995 .. 54974843
4849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0400000.1

Sequence Viewer

Length: 948 bp
ATGACGGAACTGAACGCGAAGCACCACACTCTGATTCAAGCTCTGCTCTCTCGCGGCCCACTTAAAGAGGACCAGTTCCACCGCATGTTCTCGGAACTCACCGGAGAAAACCCAGGTGTTCGTCGGAAGGCGTTTGATGATTATCTTCTGAGGATAAACAAGGCCCTTTCTTATGTTCAGTTCGAGCTGCGGGGATGCAGGAATCAATATGATGGTCAAGTTTATTATGGAGTTGTCAATAATGTCTCTGATGAAGAATCGAAGCTGGGAACTACTTATTCGGTTGCTCAGATTGCTTTCTATAAGGCTATTATAGAAGCAATAGTGCAAGAAGCTGCTCAAGGAACCATATCTAGCAGTGACGCTCTTAATCTACGATTAGAGAATCAGGTTAACAGTGGTACATCATCACAATCACAAGGAGGTCCACTTCCTATCCCTACTGCATTGAAGAACTTTTCAATGTCCCAGAAGGAAAAAACTCTTGATGAATTTGTACGGGATAAATGGCTTTCCTTCACTGCTGAGGGTCATGTTGGACTTGGTGTCAGATCCTTCCTTGATCTGCGAAGTTGGTTTCGCAATAATGATGTTCCTTCATGCGAAGTGTGCAACGAAGCTGGCGTGAAGGCAGTGTTATGCCAGAAAGAGGGTTGTTCGGTTCGAATTCATCAGTACTGCCTAGGAAAACTGTTTGCTAAGAAAAAGGGTGAAAGAGTTTGTCCAAGTTGTGGTACTCAATGGCAATATACAGGACCAAAAGCAGAAGCTGTAGAAGATGACGAGCCAGATTGCGCTACTCAGAGCCAACCACCTGTGGAACCCAAGAGAAAGAAACTGAGAACAAGCCGAATTGGTGATGGAGATATAGTTGAATCTAGTTCCTCTCAGTCTTCCTTACCTGCTCGTAATCTGAGAAGATCAACTCGAAATTCCACCCGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

315

Amino Acids

35.14

Weight (kDa)

8.65

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMC_Nse1 PF07574 8 - 189 4.9e-47 Nse1 non-SMC component of SMC5-6 complex
zf-RING-like PF08746 201 - 244 4.5e-10 RING-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 910
AccB7I CCANNNNNTGG 1 cut(s) 731
AccII CGCG 2 cut(s) 17, 54
AciI CCGC 4 cut(s) 54, 82, 190, 940
AclWI GGATC 1 cut(s) 546
AcsI RAATTY 3 cut(s) 491, 666, 931
AfaI GTAC 4 cut(s) 403, 498, 677, 736
AfiI CCNNNNNNNGG 2 cut(s) 649, 731
AgsI TTSAA 4 cut(s) 38, 451, 462, 875
AhdI GACNNNNNGTC 1 cut(s) 545
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 6 cut(s) 41, 187, 265, 335, 620, 770
AluI AGCT 6 cut(s) 41, 187, 265, 335, 620, 770
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 1 cut(s) 546
AlwNI CAGNNNCTG 1 cut(s) 770
AoxI GGCC 2 cut(s) 55, 162
ApeKI GCWGC 2 cut(s) 187, 335
ApoI RAATTY 3 cut(s) 491, 666, 931
AspA2I CCTAGG 1 cut(s) 682
AspLEI GCGC 1 cut(s) 797
AspS9I GGNCC 5 cut(s) 56, 70, 163, 425, 755
AsuHPI GGTGA 3 cut(s) 91, 722, 869
AsuII TTCGAA 1 cut(s) 664
AvaII GGWCC 3 cut(s) 70, 425, 755
AvrII CCTAGG 1 cut(s) 682
BbsI GAAGAC 1 cut(s) 885
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 174, 322
BccI CCATC 2 cut(s) 206, 854
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 3 cut(s) 354, 683, 879
BfmI CTRYAG 1 cut(s) 771
BfuAI ACCTGC 1 cut(s) 910
BisI GCNGC 3 cut(s) 55, 188, 336
BlnI CCTAGG 1 cut(s) 682
BlsI GCNGC 3 cut(s) 56, 189, 337
BmcAI AGTACT 1 cut(s) 677
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 3 cut(s) 70, 425, 755
BmeRI GACNNNNNGTC 1 cut(s) 545
BmgT120I GGNCC 5 cut(s) 56, 70, 163, 425, 755
BmiI GGNNCC 2 cut(s) 346, 822
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 885
Bpu10I CCTNAGC 1 cut(s) 525
Bpu14I TTCGAA 1 cut(s) 664
BpuEI CTTGAG 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 112, 682
BsaWI WCCGGW 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 855, 885
Bsc4I CCNNNNNNNGG 2 cut(s) 649, 731
Bse1I ACTGG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 112, 682
BseGI GGATG 1 cut(s) 200
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 649, 731
BseMII CTCAG 7 cut(s) 140, 302, 516, 815, 830, 902, 905
BseNI ACTGG 1 cut(s) 73
BseXI GCAGC 2 cut(s) 174, 322
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 2 cut(s) 17, 54
BshFI GGCC 2 cut(s) 57, 164
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 2 cut(s) 649, 731
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 451
BsnI GGCC 2 cut(s) 57, 164
Bsp119I TTCGAA 1 cut(s) 664
Bsp143I GATC 3 cut(s) 551, 562, 920
BspACI CCGC 4 cut(s) 54, 82, 190, 940
BspANI GGCC 2 cut(s) 57, 164
BspCNI CTCAG 7 cut(s) 141, 301, 517, 814, 831, 901, 906
BspFNI CGCG 2 cut(s) 17, 54
BspLI GGNNCC 2 cut(s) 346, 822
BspMI ACCTGC 1 cut(s) 910
BspPI GGATC 1 cut(s) 546
BspT104I TTCGAA 1 cut(s) 664
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 112, 682
BssMI GATC 3 cut(s) 551, 562, 920
BssT1I CCWWGG 1 cut(s) 682
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 398, 693
BstBI TTCGAA 1 cut(s) 664
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 8 cut(s) 149, 288, 525, 699, 801, 839, 888, 914
BstF5I GGATG 1 cut(s) 200
BstFNI CGCG 2 cut(s) 17, 54
BstHHI GCGC 1 cut(s) 797
BstKTI GATC 3 cut(s) 554, 565, 923
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 3 cut(s) 551, 562, 920
BstMWI GCNNNNNNNGC 2 cut(s) 293, 609
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 771
BstUI CGCG 2 cut(s) 17, 54
BstV1I GCAGC 2 cut(s) 174, 322
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BsuRI GGCC 2 cut(s) 57, 164
BtsCI GGATG 1 cut(s) 200
BtsI GCAGTG 3 cut(s) 364, 519, 639
BtsIMutI CAGTG 4 cut(s) 364, 403, 519, 639
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 1 cut(s) 622
CaiI CAGNNNCTG 1 cut(s) 770
CfoI GCGC 1 cut(s) 797
Cfr13I GGNCC 5 cut(s) 56, 70, 163, 425, 755
CseI GACGC 1 cut(s) 371
Csp6I GTAC 4 cut(s) 402, 497, 676, 735
CviAII CATG 3 cut(s) 85, 533, 600
CviQI GTAC 4 cut(s) 402, 497, 676, 735
DdeI CTNAG 8 cut(s) 149, 288, 525, 699, 801, 839, 888, 914
DpnI GATC 3 cut(s) 553, 564, 922
DpnII GATC 3 cut(s) 551, 562, 920
DriI GACNNNNNGTC 1 cut(s) 545
Eam1105I GACNNNNNGTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 682
Eco47I GGWCC 3 cut(s) 70, 425, 755
EcoO109I RGGNCCY 1 cut(s) 163
EcoRI GAATTC 1 cut(s) 666
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 682
FaeI CATG 3 cut(s) 88, 536, 603
FaqI GGGAC 1 cut(s) 451
FatI CATG 3 cut(s) 84, 532, 599
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 55, 188, 336
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 3 cut(s) 55, 188, 336
FspBI CTAG 3 cut(s) 354, 683, 879
GlaI GCGC 1 cut(s) 796
GluI GCNGC 3 cut(s) 55, 188, 336
GsaI CCCAGC 1 cut(s) 269
HaeIII GGCC 2 cut(s) 57, 164
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 371
HhaI GCGC 1 cut(s) 797
Hin1II CATG 3 cut(s) 88, 536, 603
Hin6I GCGC 1 cut(s) 795
HinP1I GCGC 1 cut(s) 795
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 5 cut(s) 34, 202, 257, 385, 875
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 1 cut(s) 102
HphI GGTGA 3 cut(s) 91, 722, 869
Hpy166II GTNNAC 2 cut(s) 394, 428
Hpy188I TCNGA 9 cut(s) 33, 94, 126, 150, 250, 291, 551, 804, 915
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 2 cut(s) 394, 428
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 6 cut(s) 121, 466, 526, 565, 606, 622
HpyCH4III ACNGT 2 cut(s) 398, 693
HpyCH4V TGCA 4 cut(s) 198, 328, 446, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 609
HpyF3I CTNAG 8 cut(s) 149, 288, 525, 699, 801, 839, 888, 914
Hsp92II CATG 3 cut(s) 88, 536, 603
HspAI GCGC 1 cut(s) 795
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 3 cut(s) 551, 562, 920
Lsp1109I GCAGC 2 cut(s) 174, 322
LweI GCATC 1 cut(s) 185
MaeI CTAG 3 cut(s) 354, 683, 879
MaeIII GTNAC 1 cut(s) 359
MalI GATC 3 cut(s) 553, 564, 922
MboI GATC 3 cut(s) 551, 562, 920
MboII GAAGA 6 cut(s) 137, 266, 463, 788, 885, 930
MflI RGATCY 1 cut(s) 551
MluCI AATT 4 cut(s) 491, 666, 852, 931
MmeI TCCRAC 2 cut(s) 104, 517
MnlI CCTC 6 cut(s) 61, 144, 416, 520, 643, 895
MseI TTAA 3 cut(s) 63, 369, 393
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 2 cut(s) 17, 54
MwoI GCNNNNNNNGC 2 cut(s) 293, 609
NdeII GATC 3 cut(s) 551, 562, 920
NlaIII CATG 3 cut(s) 88, 536, 603
NlaIV GGNNCC 2 cut(s) 346, 822
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 88
NspV TTCGAA 1 cut(s) 664
PcsI WCGNNNNNNNCGW 1 cut(s) 621
PfeI GAWTC 5 cut(s) 34, 202, 257, 385, 875
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 3 cut(s) 56, 189, 337
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 346, 822
PspPI GGNCC 5 cut(s) 56, 70, 163, 425, 755
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 4 cut(s) 403, 498, 677, 736
RsaNI GTAC 4 cut(s) 402, 497, 676, 735
SaqAI TTAA 3 cut(s) 63, 369, 393
SatI GCNGC 3 cut(s) 55, 188, 336
Sau3AI GATC 3 cut(s) 551, 562, 920
Sau96I GGNCC 5 cut(s) 56, 70, 163, 425, 755
ScaI AGTACT 1 cut(s) 677
ScrFI CCNGG 1 cut(s) 114
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 771
SfuI TTCGAA 1 cut(s) 664
SinI GGWCC 3 cut(s) 70, 425, 755
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 4 cut(s) 491, 666, 852, 931
SsiI CCGC 4 cut(s) 54, 82, 190, 940
SspMI CTAG 3 cut(s) 354, 683, 879
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 682
TaaI ACNGT 2 cut(s) 398, 693
TaqI TCGA 4 cut(s) 183, 260, 664, 928
TasI AATT 4 cut(s) 491, 666, 852, 931
TatI WGTACW 1 cut(s) 675
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 5 cut(s) 34, 202, 257, 385, 875
Tru1I TTAA 3 cut(s) 63, 369, 393
Tru9I TTAA 3 cut(s) 63, 369, 393
TscAI CASTG 4 cut(s) 364, 403, 526, 639
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 187, 335
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 4 cut(s) 267, 504, 588, 659
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 4 cut(s) 364, 403, 526, 639
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 3 cut(s) 70, 425, 755
XapI RAATTY 3 cut(s) 491, 666, 931
XceI RCATGY 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 682
XspI CTAG 3 cut(s) 354, 683, 879
ZrmI AGTACT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.