Rh5AG457000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000140
Physical Location & Seq
Forward (+)
78357739 .. 78362844
5106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG457000.1

Sequence Viewer

Length: 2838 bp
ATGGATGCAAGTTCTCAAATGCTAAAACCCAAAAGGCAGAAGTTGGATGGGGGAGAAGAGAATCGAGATATGGAAGGAGGCATGAAGAGTTTAAGCAATTTACCTGATGTGGTTCTTGAAAAAATTCTCTCCTTGCTTTCGACAGAGAATGCTATCAGAACAAGCATACTTTCGAAAAGATGGGAATACCTATGGACATCAATTCCCACACTCAATTTTTTTCAAGGGACTCTTAACAAGAGAACTGCCATGGTGAATGCTGTGGAAAGAGCACTTATGCTTCGTCGTGGTGTTGATATAAAAAAGTTTACTCTTTGCTTTGAAGTGCTAGGTGATGCATCTCTTCTTAATCCATGGATCTCTGCCATAGTAAGGCTCAACGTTGAAGAGCTTTTTCTTGGCCTGTATAGCTTGAATGGACCGCTTTGTTTGCCTCATTCTTTGTTTAGTTCCTCAACACTGAAGGACTTGCAACTAGATGTGCCCTTTATTTTCAAAGTTCCTTCTACTGTTTGTCTCTCAAGTTTAAGGAGATTGACACTTAGGTCTGTGGTGTTTTCTGATGAATACTCTACCCAGCAACTCTTTTCTGGTTGTCCAGTTCTTGAGAAATTATCTCTACATAACTGCAATTGGGGGAATCTCAAGTTTGTGAGTATTTGTGCTCCAAAGCTTTTGAGATTGATCATAAATGAAAGTGATTTGCAAATTTCCAGAGATGCAGGCGGTTGCCGGATTATGGTGTTTGGTGTCAGTCTTACATATTTTTCTTATGCGGGTGAATTCCTAAATGAATATACCTTTCATAGCTCATCAGTAAATCAGGCTGAGATTAATGCTTGTCCTACTAGGATGTGGAGACATTTGAGTTACCGATTGTATAAGCTTTTTAGAGGGCTATCTAGTCTGAAGACACTAACTACCTGTTCTTATTTCTTTAAGGTCATGCTGGCTAATGTATCAGAGCTGCTTGCCCAGATGCCCTTGTTCAATGATCTAACCACATTGGTATTGGATTCAGTACGAGTAGATCTTGATTGTGACGGACTATTGAGGATGCTCCAAAACTGTCCCTGTCTTCAAACTCTCGTATTCAGTGAGGGGATTAGCCTGTCCTCTGGTGATGCAAATGATGATGGGGTTTTGGACCCACTGCCTCCTTGTTTCTTGACAAGTCTCAAAGAGATTAAAGTCTATGCATTTTATGGAGATGAGGATGAAATTTATGCAGTAGAGAGTTTGCTTAAGACTGCAATGGTATTGGAGAAGGTGATTGTAACTTTCGCTAAGTCTCTTGAAGGAGGACCAGAGGAGATAAATGATGTTGGCAGACAGTTGAGTGATTTCCCAAAGGGGTCAGCAATCTTTTCTTTCTGGGCTCCAAACGTTTCCTTTTCTCCCTCTCCAGAGCGATCATCTTGCTCATCATTCGGTTTCTGGGGAAAAGATAGGACTATGGATGCAAGTTCTCGAATGGTACAATATAAAAAGCAGAAGTTGGATGGAGCAGAAGAGATGATAGGAGGCAGCAAGAGTTTAAGCAATTTACCGGATGTGCTTATTGTAAAAATTCTCTCCTTGCTTCCAACCAAAGATGCTATCAGGACAAGCATTCTGTCTAAAAGATGGGAATACATATGGACATCACTTCCCAATCTCAAGTTTATTCAATGGAAGTTTGAGAACAAGAGAACTCTCTTGGTGAATGCTGTGGAAAGAGCGCTTATTCTTCGTGGCCCTGCTGATATTAAAGAGTTCAGTCTTTCATTTGAAGTGTTGGGGGATGCATTACGTGTTAATACATGGATCTCTGCTGTATTACAGCACAATGTTGAAGATCTTTCTTTAGTCCTGCACAGTTTCAAGGACCCAGTTTCTTTGCCTCGTTCTTTATTTATGTCTGCGACATTGAAAGTGCTCCTGCTGGAACTGCCCTGTATTTTCAAAGTTCCTTCTACTATTTGTTTCTCAAGCCTAAGGAGCTTAACTCTTTCGTCCGTGGTGTTTTCTGACGACTACTCGGCCCAGCAGTTGTTTTCTGGTTGCTCAGTTCTTGAGGAAATATTTCTATATGGTTGCAATTGGGCAAATCTCAACTTTGTGAGTATTTCTGCTCCGAAGCTTTTGAGGTTTACCATAGATGAAGGGGATTCACAAATTTTAAGAGGTTCAGATGGTTGTCAGATTATGGTACTTGGAGTTAGACTCGCATATTTTTCTTACACAGGTGAGTTCCTAGATGACTATTGCTTTTATAACTCATCAGCAAATGAAGCTCTGATATCTCTTAATTCTATCAAGAGGGTCCAACATGTTAGTTACCGGTTGTATAAGCTTCTTAATGGGCTCTCTAGTGTGAAGCACCTAACCATCTGTGATACGTCTTTTGAGGTGGTTCAGACTAATGCTTCAGAACATCTTATGCCCTCGTTCAATAATCTAACCACCTTGATATTTGAACGAGTGGAAGTAGATCTCGGTTGCAAAGGACTATTGACCTTTCTTCAAAATTGTCCTTGTCTTAAGTATCTTATATTCTGTGAGGGGATTGGTCTGTACTCAGATGATGCAAAAGATGATGGGATGTTGGAGCCACTGCCTCCATGTTTCTTGAATAGTCTTGAAGAGATTGATGTCTTAGAATTTTGTGGAGATGAGGATGAGCTTCATGCAATGAAGGTCTTGCTAAAATGTGCAATGGTCTTGAAAAAGGTGACTATTAATTGGTGCAGCGGTGTTCAAGTGGAACCAGAAACGATGAAGGACATTAACAAACAGTTATTAGATCTCCCCAGAGGGTCAGGAAACTGCAAAGTTGTTTGTTTGTGCGCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

945

Amino Acids

105.97

Weight (kDa)

5.6

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 31 - 68 8.6e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 96 - 423 1.2e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 117 - 234 4.8e-12 FBD-associated F-box protein At5g56370, LRR repeats
F-box PF00646 513 - 553 3.5e-09 F-box domain
LRR_At1g61320_AtMIF1 PF23622 583 - 912 1.3e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 600 - 708 4.8e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2256
AasI GACNNNNNNGTC 1 cut(s) 544
AciI CCGC 4 cut(s) 422, 726, 776, 2733
AclI AACGTT 2 cut(s) 381, 1386
AclWI GGATC 2 cut(s) 365, 1814
AcsI RAATTY 7 cut(s) 123, 708, 782, 1221, 1569, 2157, 2642
AcuI CTGAAG 3 cut(s) 482, 929, 2394
AfaI GTAC 4 cut(s) 1023, 1479, 2193, 2558
AfeI AGCGCT 1 cut(s) 1722
AfiI CCNNNNNNNGG 2 cut(s) 372, 739
AflII CTTAAG 2 cut(s) 1244, 2522
AflIII ACRYGT 2 cut(s) 1792, 2311
AgeI ACCGGT 1 cut(s) 2322
Alw21I GWGCWC 3 cut(s) 274, 667, 1920
Alw26I GTCTC 4 cut(s) 521, 853, 1181, 1296
AlwI GGATC 2 cut(s) 365, 1814
Aor51HI AGCGCT 1 cut(s) 1722
AoxI GGCC 3 cut(s) 400, 1735, 2022
ApeKI GCWGC 3 cut(s) 967, 1527, 2730
ApoI RAATTY 7 cut(s) 123, 708, 782, 1221, 1569, 2157, 2642
AseI ATTAAT 2 cut(s) 834, 2721
AsiGI ACCGGT 1 cut(s) 2322
Asp700I GAANNNNTTC 2 cut(s) 123, 2064
AspLEI GCGC 2 cut(s) 1723, 2831
AspS9I GGNCC 7 cut(s) 419, 1147, 1304, 1736, 1867, 2023, 2305
AsuHPI GGTGA 8 cut(s) 265, 344, 791, 1133, 1282, 1714, 2240, 2725
AsuII TTCGAA 1 cut(s) 173
AvaII GGWCC 5 cut(s) 419, 1147, 1304, 1867, 2305
AxyI CCTNAGG 1 cut(s) 1976
BaeGI GKGCMC 1 cut(s) 486
BanII GRGCYC 2 cut(s) 1381, 2349
BbsI GAAGAC 2 cut(s) 917, 1070
Bbv12I GWGCWC 3 cut(s) 274, 667, 1920
BbvI GCAGC 3 cut(s) 954, 1539, 2742
BccI CCATC 8 cut(s) 41, 174, 1130, 1496, 1620, 2168, 2378, 2573
BcgI CGANNNNNNTGC 2 cut(s) 1401, 1435
BclI TGATCA 1 cut(s) 684
BcoDI GTCTC 4 cut(s) 521, 853, 1181, 1296
BfaI CTAG 6 cut(s) 329, 476, 849, 903, 2237, 2352
BfoI RGCGCY 1 cut(s) 1724
BfrI CTTAAG 2 cut(s) 1244, 2522
BglII AGATCT 4 cut(s) 1030, 1837, 2473, 2785
BisI GCNGC 3 cut(s) 968, 1528, 2731
BlsI GCNGC 3 cut(s) 969, 1529, 2732
Bme18I GGWCC 5 cut(s) 419, 1147, 1304, 1867, 2305
BmgT120I GGNCC 7 cut(s) 419, 1147, 1304, 1736, 1867, 2023, 2305
BmiI GGNNCC 6 cut(s) 1149, 1380, 1869, 2306, 2592, 2748
BmrI ACTGGG 1 cut(s) 1865
BmuI ACTGGG 1 cut(s) 1865
BpiI GAAGAC 2 cut(s) 917, 1070
BplI GAGNNNNNCTC 4 cut(s) 1972, 2004, 2190, 2222
BpmI CTGGAG 1 cut(s) 1389
Bpu14I TTCGAA 1 cut(s) 173
BpuEI CTTGAG 6 cut(s) 505, 626, 629, 1643, 1954, 2075
BsaAI YACGTR 1 cut(s) 1793
BsaJI CCNNGG 3 cut(s) 249, 353, 1998
BsaWI WCCGGW 2 cut(s) 1549, 2322
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 739
Bse118I RCCGGY 1 cut(s) 2322
Bse1I ACTGG 2 cut(s) 599, 1871
Bse21I CCTNAGG 1 cut(s) 1976
Bse3DI GCAATG 3 cut(s) 1260, 2679, 2703
BseDI CCNNGG 3 cut(s) 249, 353, 1998
BseLI CCNNNNNNNGG 2 cut(s) 372, 739
BseMI GCAATG 3 cut(s) 1260, 2679, 2703
BseMII CTCAG 3 cut(s) 819, 2061, 2574
BseNI ACTGG 2 cut(s) 599, 1871
BseRI GAGGAG 1 cut(s) 1325
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 3 cut(s) 954, 1539, 2742
BseYI CCCAGC 2 cut(s) 576, 2025
BsgI GTGCAG 2 cut(s) 1838, 2749
BshFI GGCC 3 cut(s) 402, 1737, 2024
BshTI ACCGGT 1 cut(s) 2322
BsiHKAI GWGCWC 3 cut(s) 274, 667, 1920
BsiSI CCGG 3 cut(s) 733, 1550, 2323
BslFI GGGAC 2 cut(s) 241, 1056
BslI CCNNNNNNNGG 2 cut(s) 372, 739
BsmAI GTCTC 4 cut(s) 521, 853, 1181, 1296
BsmFI GGGAC 2 cut(s) 241, 1056
BsmI GAATGC 4 cut(s) 154, 262, 1611, 1711
BsnI GGCC 3 cut(s) 402, 1737, 2024
Bsp119I TTCGAA 1 cut(s) 173
Bsp1286I GDGCHC 6 cut(s) 274, 486, 667, 1381, 1920, 2349
Bsp143I GATC 9 cut(s) 357, 684, 994, 1030, 1412, 1806, 1837, 2473, 2785
Bsp19I CCATGG 2 cut(s) 249, 353
BspACI CCGC 4 cut(s) 422, 726, 776, 2733
BspANI GGCC 3 cut(s) 402, 1737, 2024
BspCNI CTCAG 3 cut(s) 820, 2060, 2573
BspLI GGNNCC 6 cut(s) 1149, 1380, 1869, 2306, 2592, 2748
BspPI GGATC 2 cut(s) 365, 1814
BspQI GCTCTTC 1 cut(s) 381
BspT104I TTCGAA 1 cut(s) 173
BspTI CTTAAG 2 cut(s) 1244, 2522
BsrDI GCAATG 3 cut(s) 1260, 2679, 2703
BsrFI RCCGGY 1 cut(s) 2322
BsrI ACTGG 2 cut(s) 599, 1871
BssAI RCCGGY 1 cut(s) 2322
BssECI CCNNGG 3 cut(s) 249, 353, 1998
BssMI GATC 9 cut(s) 357, 684, 994, 1030, 1412, 1806, 1837, 2473, 2785
BssT1I CCWWGG 2 cut(s) 249, 353
Bst4CI ACNGT 5 cut(s) 511, 1070, 1335, 1859, 2778
Bst6I CTCTTC 6 cut(s) 51, 80, 348, 381, 1506, 2619
BstAFI CTTAAG 2 cut(s) 1244, 2522
BstBAI YACGTR 1 cut(s) 1793
BstBI TTCGAA 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 724, 951, 972
BstDEI CTNAG 7 cut(s) 542, 828, 1287, 1976, 2047, 2560, 2638
BstDSI CCRYGG 3 cut(s) 249, 353, 1998
BstH2I RGCGCY 1 cut(s) 1724
BstHHI GCGC 2 cut(s) 1723, 2831
BstKTI GATC 9 cut(s) 360, 687, 997, 1033, 1415, 1809, 1840, 2476, 2788
BstMAI GTCTC 4 cut(s) 521, 853, 1181, 1296
BstMBI GATC 9 cut(s) 357, 684, 994, 1030, 1412, 1806, 1837, 2473, 2785
BstMWI GCNNNNNNNGC 5 cut(s) 408, 430, 1930, 1980, 2273
BstNSI RCATGY 1 cut(s) 2315
BstSLI GKGCMC 1 cut(s) 486
BstV1I GCAGC 3 cut(s) 954, 1539, 2742
BstV2I GAAGAC 2 cut(s) 917, 1070
BstX2I RGATCY 6 cut(s) 357, 1030, 1806, 1837, 2473, 2785
BstYI RGATCY 6 cut(s) 357, 1030, 1806, 1837, 2473, 2785
Bsu36I CCTNAGG 1 cut(s) 1976
BsuRI GGCC 3 cut(s) 402, 1737, 2024
BtgI CCRYGG 3 cut(s) 249, 353, 1998
BtsI GCAGTG 2 cut(s) 1151, 2594
BtsIMutI CAGTG 4 cut(s) 458, 1102, 1151, 2594
Cac8I GCNNGC 3 cut(s) 724, 951, 972
CfoI GCGC 2 cut(s) 1723, 2831
Cfr10I RCCGGY 1 cut(s) 2322
Cfr13I GGNCC 7 cut(s) 419, 1147, 1304, 1736, 1867, 2023, 2305
Csp6I GTAC 4 cut(s) 1022, 1478, 2192, 2557
CspAI ACCGGT 1 cut(s) 2322
CviAII CATG 8 cut(s) 82, 250, 354, 946, 1803, 2312, 2604, 2669
CviQI GTAC 4 cut(s) 1022, 1478, 2192, 2557
DdeI CTNAG 7 cut(s) 542, 828, 1287, 1976, 2047, 2560, 2638
DpnI GATC 9 cut(s) 359, 686, 996, 1032, 1414, 1808, 1839, 2475, 2787
DpnII GATC 9 cut(s) 357, 684, 994, 1030, 1412, 1806, 1837, 2473, 2785
DrdI GACNNNNNNGTC 1 cut(s) 544
DseDI GACNNNNNNGTC 1 cut(s) 544
Eam1104I CTCTTC 6 cut(s) 51, 80, 348, 381, 1506, 2619
EarI CTCTTC 6 cut(s) 51, 80, 348, 381, 1506, 2619
Eco130I CCWWGG 2 cut(s) 249, 353
Eco24I GRGCYC 2 cut(s) 1381, 2349
Eco32I GATATC 1 cut(s) 2283
Eco47I GGWCC 5 cut(s) 419, 1147, 1304, 1867, 2305
Eco47III AGCGCT 1 cut(s) 1722
Eco57I CTGAAG 3 cut(s) 482, 929, 2394
Eco81I CCTNAGG 1 cut(s) 1976
EcoO109I RGGNCCY 1 cut(s) 1867
EcoRI GAATTC 1 cut(s) 782
EcoRV GATATC 1 cut(s) 2283
EcoT14I CCWWGG 2 cut(s) 249, 353
EcoT22I ATGCAT 3 cut(s) 340, 1201, 1789
EcoT38I GRGCYC 2 cut(s) 1381, 2349
ErhI CCWWGG 2 cut(s) 249, 353
FaeI CATG 8 cut(s) 85, 253, 357, 949, 1806, 2315, 2607, 2672
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 2 cut(s) 241, 1056
FatI CATG 8 cut(s) 81, 249, 353, 945, 1802, 2311, 2603, 2668
FauI CCCGC 1 cut(s) 769
FauNDI CATATG 1 cut(s) 1637
FbaI TGATCA 1 cut(s) 684
Fnu4HI GCNGC 3 cut(s) 968, 1528, 2731
FriOI GRGCYC 2 cut(s) 1381, 2349
Fsp4HI GCNGC 3 cut(s) 968, 1528, 2731
FspBI CTAG 6 cut(s) 329, 476, 849, 903, 2237, 2352
GlaI GCGC 2 cut(s) 1722, 2830
GluI GCNGC 3 cut(s) 968, 1528, 2731
GsaI CCCAGC 2 cut(s) 580, 2029
GsuI CTGGAG 1 cut(s) 1389
HaeII RGCGCY 1 cut(s) 1724
HaeIII GGCC 3 cut(s) 402, 1737, 2024
HapII CCGG 3 cut(s) 733, 1550, 2323
HhaI GCGC 2 cut(s) 1723, 2831
Hin1II CATG 8 cut(s) 85, 253, 357, 949, 1806, 2315, 2607, 2672
Hin6I GCGC 2 cut(s) 1721, 2829
HinP1I GCGC 2 cut(s) 1721, 2829
HindIII AAGCTT 4 cut(s) 671, 884, 2120, 2333
HinfI GANTC 6 cut(s) 61, 229, 640, 1016, 2150, 2205
HpaII CCGG 3 cut(s) 733, 1550, 2323
HphI GGTGA 8 cut(s) 265, 344, 791, 1133, 1282, 1714, 2240, 2725
Hpy166II GTNNAC 2 cut(s) 309, 2133
Hpy8I GTNNAC 2 cut(s) 309, 2133
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 9 cut(s) 68, 457, 513, 1261, 1292, 1962, 2138, 2671, 2755
HpyCH4III ACNGT 5 cut(s) 511, 1070, 1335, 1859, 2778
HpyCH4IV ACGT 4 cut(s) 381, 1386, 1792, 2381
HpyF10VI GCNNNNNNNGC 5 cut(s) 408, 430, 1930, 1980, 2273
HpyF3I CTNAG 7 cut(s) 542, 828, 1287, 1976, 2047, 2560, 2638
HpySE526I ACGT 4 cut(s) 381, 1386, 1792, 2381
Hsp92II CATG 8 cut(s) 85, 253, 357, 949, 1806, 2315, 2607, 2672
HspAI GCGC 2 cut(s) 1721, 2829
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 9 cut(s) 357, 684, 994, 1030, 1412, 1806, 1837, 2473, 2785
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 8 cut(s) 670, 1065, 1384, 1505, 1923, 1980, 2119, 2590
Lsp1109I GCAGC 3 cut(s) 954, 1539, 2742
MaeI CTAG 6 cut(s) 329, 476, 849, 903, 2237, 2352
MaeII ACGT 4 cut(s) 381, 1386, 1792, 2381
MaeIII GTNAC 5 cut(s) 869, 1040, 1276, 2318, 2713
MalI GATC 9 cut(s) 359, 686, 996, 1032, 1414, 1808, 1839, 2475, 2787
MboI GATC 9 cut(s) 357, 684, 994, 1030, 1412, 1806, 1837, 2473, 2785
MfeI CAATTG 2 cut(s) 631, 2080
MflI RGATCY 6 cut(s) 357, 1030, 1806, 1837, 2473, 2785
MhlI GDGCHC 6 cut(s) 274, 486, 667, 1381, 1920, 2349
MlyI GAGTC 2 cut(s) 223, 2199
MmeI TCCRAC 5 cut(s) 24, 1479, 1610, 2332, 2568
Mph1103I ATGCAT 3 cut(s) 340, 1201, 1789
MroXI GAANNNNTTC 2 cut(s) 123, 2064
MspA1I CMGCKG 1 cut(s) 2733
MspCI CTTAAG 2 cut(s) 1244, 2522
MspI CCGG 3 cut(s) 733, 1550, 2323
MunI CAATTG 2 cut(s) 631, 2080
Mva1269I GAATGC 4 cut(s) 154, 262, 1611, 1711
MwoI GCNNNNNNNGC 5 cut(s) 408, 430, 1930, 1980, 2273
NcoI CCATGG 2 cut(s) 249, 353
NdeI CATATG 1 cut(s) 1637
NdeII GATC 9 cut(s) 357, 684, 994, 1030, 1412, 1806, 1837, 2473, 2785
NlaIII CATG 8 cut(s) 85, 253, 357, 949, 1806, 2315, 2607, 2672
NlaIV GGNNCC 6 cut(s) 1149, 1380, 1869, 2306, 2592, 2748
NmeAIII GCCGAG 1 cut(s) 2000
NmuCI GTSAC 2 cut(s) 1040, 2713
NsiI ATGCAT 3 cut(s) 340, 1201, 1789
NspI RCATGY 1 cut(s) 2315
NspV TTCGAA 1 cut(s) 173
PciI ACATGT 1 cut(s) 2311
PciSI GCTCTTC 1 cut(s) 381
PctI GAATGC 4 cut(s) 154, 262, 1611, 1711
PdmI GAANNNNTTC 2 cut(s) 123, 2064
PfeI GAWTC 4 cut(s) 61, 640, 1016, 2150
PinAI ACCGGT 1 cut(s) 2322
PkrI GCNGC 3 cut(s) 969, 1529, 2732
PleI GAGTC 2 cut(s) 223, 2199
PpsI GAGTC 2 cut(s) 223, 2199
Ppu21I YACGTR 1 cut(s) 1793
PpuMI RGGWCCY 1 cut(s) 1867
PscI ACATGT 1 cut(s) 2311
PshBI ATTAAT 2 cut(s) 834, 2721
PsiI TTATAA 1 cut(s) 2256
Psp1406I AACGTT 2 cut(s) 381, 1386
Psp5II RGGWCCY 1 cut(s) 1867
PspFI CCCAGC 2 cut(s) 576, 2025
PspN4I GGNNCC 6 cut(s) 1149, 1380, 1869, 2306, 2592, 2748
PspPI GGNCC 7 cut(s) 419, 1147, 1304, 1736, 1867, 2023, 2305
PspPPI RGGWCCY 1 cut(s) 1867
PsuI RGATCY 6 cut(s) 357, 1030, 1806, 1837, 2473, 2785
RsaI GTAC 4 cut(s) 1023, 1479, 2193, 2558
RsaNI GTAC 4 cut(s) 1022, 1478, 2192, 2557
SapI GCTCTTC 1 cut(s) 381
SatI GCNGC 3 cut(s) 968, 1528, 2731
Sau3AI GATC 9 cut(s) 357, 684, 994, 1030, 1412, 1806, 1837, 2473, 2785
Sau96I GGNCC 7 cut(s) 419, 1147, 1304, 1736, 1867, 2023, 2305
SchI GAGTC 2 cut(s) 223, 2199
SduI GDGCHC 6 cut(s) 274, 486, 667, 1381, 1920, 2349
SfuI TTCGAA 1 cut(s) 173
SinI GGWCC 5 cut(s) 419, 1147, 1304, 1867, 2305
SmlI CTYRAG 8 cut(s) 520, 605, 644, 1244, 1658, 1969, 2054, 2522
SmoI CTYRAG 8 cut(s) 520, 605, 644, 1244, 1658, 1969, 2054, 2522
SsiI CCGC 4 cut(s) 422, 726, 776, 2733
SspI AATATT 1 cut(s) 2064
SspMI CTAG 6 cut(s) 329, 476, 849, 903, 2237, 2352
StyI CCWWGG 2 cut(s) 249, 353
TaaI ACNGT 5 cut(s) 511, 1070, 1335, 1859, 2778
TaiI ACGT 4 cut(s) 384, 1389, 1795, 2384
TaqI TCGA 4 cut(s) 64, 140, 173, 1471
TatI WGTACW 1 cut(s) 2556
TfiI GAWTC 4 cut(s) 61, 640, 1016, 2150
TscAI CASTG 4 cut(s) 465, 1102, 1158, 2601
TseFI GTSAC 2 cut(s) 1040, 2713
TseI GCWGC 3 cut(s) 967, 1527, 2730
Tsp45I GTSAC 2 cut(s) 1040, 2713
TspGWI ACGGA 2 cut(s) 1059, 1987
TspRI CASTG 4 cut(s) 465, 1102, 1158, 2601
Vha464I CTTAAG 2 cut(s) 1244, 2522
VpaK11BI GGWCC 5 cut(s) 419, 1147, 1304, 1867, 2305
VspI ATTAAT 2 cut(s) 834, 2721
XapI RAATTY 7 cut(s) 123, 708, 782, 1221, 1569, 2157, 2642
XceI RCATGY 1 cut(s) 2315
XcmI CCANNNNNNNNNTGG 1 cut(s) 1009
XmnI GAANNNNTTC 2 cut(s) 123, 2064
XspI CTAG 6 cut(s) 329, 476, 849, 903, 2237, 2352
Zsp2I ATGCAT 3 cut(s) 340, 1201, 1789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.