RchiOBHm_Chr1g0383101

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000140
Physical Location & Seq
Reverse (-)
67589449 .. 67590105
657 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60604

Sequence Viewer

Length: 657 bp
ATGACATTCTTGGCCACATCTTATCCTTCATGGAAACAAAGAGAAGCAGTTAGAACGAGTACATTGTCAAAACGGTGGAAGTACGTAAGGACATTCACTCCCAACCTCGTCTTCGATGATTTCTGCTTCTGGTTTATAAAAGAAAACCTTTGGAAACAGGTTGGGGATTATGTAGCAAGGGAGATCCACCTTCGAGGTTTCGTGAGAAGCTTTGGTTTTGAAGTTCGTCATTATGGAATCGTTGCTGCCCTCTTGAGGTCTTGGATCACGGAGCTAGTAATGCGTAATGTTCAAGATGTTTCCTTGCTTCTCAATTCAAGTGATGAACACAATGTGCTACCTGACTGCTTGTTTACTTGCAAATCACTTGTGCATTTTAAATTTAGTATAGGAGGGATCGTTTCCCTCGAACTTCCCGCTACAATATATTTTTCGAATCTCAAAACATTGAATCTTAGAAATGTTCGATTCTTAAATGAGCACTCGACGAACCAGTTGTTTTCTAGTTGCCCGGTGCTTGAAGATTTAACCCTCAATGACTGCCGTTGGTCGGATTTCCAGCTTATCAATATCTGTGCACCCAAGCTCTTGAGACTGACTATATTCGAACGTGTGCACTTCCGTTATACTAATCCTAGCCTCATGGCTGCCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

218

Amino Acids

25.5

Weight (kDa)

9.1

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 85 - 202 3.1e-14 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
AciI CCGC 1 cut(s) 417
AclWI GGATC 3 cut(s) 178, 272, 404
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 380
AdeI CACNNNGTG 1 cut(s) 334
AfaI GTAC 2 cut(s) 61, 83
AfiI CCNNNNNNNGG 2 cut(s) 255, 550
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 5 cut(s) 221, 293, 318, 451, 521
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 4 cut(s) 210, 274, 562, 586
AluI AGCT 4 cut(s) 210, 274, 562, 586
Alw21I GWGCWC 3 cut(s) 483, 580, 618
Alw26I GTCTC 1 cut(s) 586
Alw44I GTGCAC 2 cut(s) 576, 614
AlwI GGATC 3 cut(s) 178, 272, 404
AoxI GGCC 1 cut(s) 12
ApaLI GTGCAC 2 cut(s) 576, 614
ApeKI GCWGC 2 cut(s) 245, 647
ApoI RAATTY 1 cut(s) 380
AsuC2I CCSGG 1 cut(s) 512
AsuII TTCGAA 2 cut(s) 434, 606
BaeGI GKGCMC 2 cut(s) 580, 618
BalI TGGCCA 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 3 cut(s) 483, 580, 618
BbvI GCAGC 2 cut(s) 232, 634
BceAI ACGGC 1 cut(s) 528
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 586
BfaI CTAG 3 cut(s) 275, 504, 636
BisI GCNGC 2 cut(s) 246, 648
BlsI GCNGC 2 cut(s) 247, 649
Bme1390I CCNGG 1 cut(s) 512
BmrFI CCNGG 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 103
Bpu14I TTCGAA 2 cut(s) 434, 606
BpuEI CTTGAG 2 cut(s) 274, 610
BpuMI CCSGG 1 cut(s) 512
BsaAI YACGTR 1 cut(s) 85
BsaXI ACNNNNNCTCC 4 cut(s) 82, 112, 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 550
Bse1I ACTGG 1 cut(s) 493
BseLI CCNNNNNNNGG 2 cut(s) 255, 550
BseNI ACTGG 1 cut(s) 493
BseSI GKGCMC 2 cut(s) 580, 618
BseXI GCAGC 2 cut(s) 232, 634
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 3 cut(s) 483, 580, 618
BsiSI CCGG 2 cut(s) 512, 651
BslI CCNNNNNNNGG 2 cut(s) 255, 550
BsmAI GTCTC 1 cut(s) 586
BsnI GGCC 1 cut(s) 14
Bsp119I TTCGAA 2 cut(s) 434, 606
Bsp1286I GDGCHC 3 cut(s) 483, 580, 618
Bsp143I GATC 3 cut(s) 183, 264, 396
BspACI CCGC 1 cut(s) 417
BspANI GGCC 1 cut(s) 14
BspPI GGATC 3 cut(s) 178, 272, 404
BspT104I TTCGAA 2 cut(s) 434, 606
BsrI ACTGG 1 cut(s) 493
BssMI GATC 3 cut(s) 183, 264, 396
Bst4CI ACNGT 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 85
BstBI TTCGAA 2 cut(s) 434, 606
BstDEI CTNAG 1 cut(s) 455
BstKTI GATC 3 cut(s) 186, 267, 399
BstMAI GTCTC 1 cut(s) 586
BstMBI GATC 3 cut(s) 183, 264, 396
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 510
BstSLI GKGCMC 2 cut(s) 580, 618
BstSNI TACGTA 1 cut(s) 85
BstV1I GCAGC 2 cut(s) 232, 634
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 60, 82
CviAII CATG 2 cut(s) 30, 643
CviJI RGCY 7 cut(s) 14, 210, 274, 562, 586, 639, 647
CviKI_1 RGCY 7 cut(s) 14, 210, 274, 562, 586, 639, 647
CviQI GTAC 2 cut(s) 60, 82
DdeI CTNAG 1 cut(s) 455
DpnI GATC 3 cut(s) 185, 266, 398
DpnII GATC 3 cut(s) 183, 264, 396
DraI TTTAAA 1 cut(s) 379
DraIII CACNNNGTG 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 12
Eco105I TACGTA 1 cut(s) 85
FaeI CATG 2 cut(s) 33, 646
FaiI YATR 9 cut(s) 31, 137, 171, 234, 389, 427, 602, 627, 644
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 2 cut(s) 29, 642
FauI CCCGC 1 cut(s) 424
Fnu4HI GCNGC 2 cut(s) 246, 648
Fsp4HI GCNGC 2 cut(s) 246, 648
FspBI CTAG 3 cut(s) 275, 504, 636
GluI GCNGC 2 cut(s) 246, 648
HaeIII GGCC 1 cut(s) 14
HapII CCGG 2 cut(s) 512, 651
Hin1II CATG 2 cut(s) 33, 646
HindIII AAGCTT 1 cut(s) 208
HinfI GANTC 4 cut(s) 237, 436, 451, 468
HpaII CCGG 2 cut(s) 512, 651
Hpy166II GTNNAC 3 cut(s) 354, 578, 616
Hpy188I TCNGA 1 cut(s) 553
Hpy188III TCNNGA 4 cut(s) 202, 253, 293, 589
Hpy8I GTNNAC 3 cut(s) 354, 578, 616
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 2 cut(s) 36, 200
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 2 cut(s) 84, 610
HpyCH4V TGCA 4 cut(s) 360, 373, 578, 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 1 cut(s) 455
HpySE526I ACGT 2 cut(s) 84, 610
Hsp92II CATG 2 cut(s) 33, 646
Kzo9I GATC 3 cut(s) 183, 264, 396
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 115, 143, 354, 506, 525, 572
Lsp1109I GCAGC 2 cut(s) 232, 634
MaeI CTAG 3 cut(s) 275, 504, 636
MaeII ACGT 2 cut(s) 84, 610
MalI GATC 3 cut(s) 185, 266, 398
MboI GATC 3 cut(s) 183, 264, 396
MboII GAAGA 2 cut(s) 103, 533
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 3 cut(s) 483, 580, 618
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 2 cut(s) 313, 380
MluNI TGGCCA 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 8 cut(s) 116, 188, 249, 260, 386, 416, 542, 650
Mox20I TGGCCA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 14
MseI TTAA 3 cut(s) 378, 473, 527
Msp20I TGGCCA 1 cut(s) 14
MspI CCGG 2 cut(s) 512, 651
MspR9I CCNGG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 280
NciI CCSGG 1 cut(s) 512
NdeII GATC 3 cut(s) 183, 264, 396
NlaIII CATG 2 cut(s) 33, 646
NspV TTCGAA 2 cut(s) 434, 606
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PfeI GAWTC 4 cut(s) 237, 436, 451, 468
PkrI GCNGC 2 cut(s) 247, 649
Ppu21I YACGTR 1 cut(s) 85
PsiI TTATAA 1 cut(s) 137
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 2 cut(s) 61, 83
RsaNI GTAC 2 cut(s) 60, 82
SaqAI TTAA 3 cut(s) 378, 473, 527
SatI GCNGC 2 cut(s) 246, 648
Sau3AI GATC 3 cut(s) 183, 264, 396
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 3 cut(s) 483, 580, 618
SfuI TTCGAA 2 cut(s) 434, 606
SmlI CTYRAG 2 cut(s) 253, 589
SmoI CTYRAG 2 cut(s) 253, 589
SnaBI TACGTA 1 cut(s) 85
Sse9I AATT 2 cut(s) 313, 380
SsiI CCGC 1 cut(s) 417
SspMI CTAG 3 cut(s) 275, 504, 636
StyD4I CCNGG 1 cut(s) 510
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 2 cut(s) 87, 613
TaqI TCGA 7 cut(s) 114, 193, 408, 434, 466, 485, 606
TasI AATT 2 cut(s) 313, 380
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 4 cut(s) 237, 436, 451, 468
Tru1I TTAA 3 cut(s) 378, 473, 527
Tru9I TTAA 3 cut(s) 378, 473, 527
TseI GCWGC 2 cut(s) 245, 647
TspDTI ATGAA 2 cut(s) 18, 339
TspGWI ACGGA 2 cut(s) 284, 611
VneI GTGCAC 2 cut(s) 576, 614
XapI RAATTY 1 cut(s) 380
XspI CTAG 3 cut(s) 275, 504, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.