AT3G26930

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Forward (+)
9925555 .. 9927393
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26930.2

Sequence Viewer

Length: 1230 bp
ATGAGTGTCTTGTCTAAACGATGGAGGTCTCTTTGGAAGATGTTGCCTCGGCTTAAGTTTGATGATTGGATGTTTCCTGATAATGTCAACAGGTGTTTGCTTTCACATCAAGCTTCGTTTCTACAGAGTTTGCATCTTGTAATAGATTATGATTTTGTGTCTCATATGCATACTGGGATATTGATGGGAATTGCGTTTGGACGCCATATACGTGAGCTGGTACTCTATGTTAATGGCTTTCAAGAGTCCTTTACATTTCCTTTAAGCTTGTGTAACTGCGAATCACTAGAGACATTGACACTCGGTCATAACGTTCTTATAGATGTCCCTTCTCCGGTTTTTTTGAAGTCTCTTAGAACTCTACACCTAGATGGGGTTGAGTACACAGACGATGAATCAGTTGTTAACCTTTTATCTGGTTGTATTAGCCTGGAAAATTTGGTGGTCCATCGAGTTATACAAGCTGATGTGACAACTTTCACTATTGCGGTGCCATCCTTGAAGAGGCTAACACTTACTACTGAATTTGATGATGATGAAGACTCAGTCTATGTGATAAATGCTCCTTCTTTGAAATACTTGAAGATTTTAGGTGACAAGGCTTATCTGATTGAGAATTCACCTGAGTTGGTGGAGGTAAGTCTGACAGATAGGCAAGTTACTGTGGATGGTTATCCCATCGCTTCATACGTTGAGAACCTTCTTAGATCTCTTACTTCAGTCAAACGCATGTCTTTGAAGATATCATCATACTTAGAGATTAAGTTTCCAACTGGTAGCATCTTCTATCAGTTGGTATCTTTGGAGCTATATACAAATAAAGCAGAGTGGTGGAATCTGCTTGTGTTGATGCTCGATAGTTCTCCTAAATTGCAAGTCCTCAAGCTCAACGGTAAATTGTCTGGTGAAAACAATCATTTAGCCAGTATGAATTGGGATCAACCAAAGAATATTCCTGGATGTTTGTTGTTTAATCTCGAGACATTCATTTGGAAAGGCTGCAAAAGGATAGGAGAAGATGAAAAAGAGGTGGCGAAATACATCCTAAGGAACACAAATCGTTTGAAGAGGGCGACTTTCACCAGAGAAATCTATGAAGAGAACAATTCTCAAGACATGTTTGAGAATCTTGAAATGGTGGAGGAATTGGAAAGTGTGGTCAGAGCTTCAAAGTCATGCAAGCTTGTGTTCGAATCTACCTTGTGGTCACTATCCAATTATGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

409

Amino Acids

47.01

Weight (kDa)

5.41

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 23 - 63 2.5e-09 F-box domain
LRR_At1g61320_AtMIF1 PF23622 106 - 371 1.6e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 113 - 244 1.2e-11 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 162 - 186 1.4e-08 Leucine Rich Repeat
FBD PF08387 359 - 405 2.6e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 490
AciI CCGC 1 cut(s) 488
AclI AACGTT 1 cut(s) 312
AclWI GGATC 1 cut(s) 945
AcsI RAATTY 3 cut(s) 436, 524, 616
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 1 cut(s) 202
AfaI GTAC 2 cut(s) 222, 383
AfiI CCNNNNNNNGG 3 cut(s) 334, 373, 504
AflII CTTAAG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 1116
AgsI TTSAA 9 cut(s) 242, 346, 502, 574, 583, 739, 1066, 1133, 1170
AhdI GACNNNNNGTC 1 cut(s) 303
AjnI CCWGG 2 cut(s) 429, 955
AluBI AGCT 8 cut(s) 113, 217, 267, 464, 808, 886, 1166, 1183
AluI AGCT 8 cut(s) 113, 217, 267, 464, 808, 886, 1166, 1183
Alw26I GTCTC 5 cut(s) 33, 165, 284, 354, 974
AlwI GGATC 1 cut(s) 945
Ama87I CYCGRG 1 cut(s) 977
ApeKI GCWGC 1 cut(s) 999
ApoI RAATTY 3 cut(s) 436, 524, 616
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 4 cut(s) 605, 612, 917, 1072
AsuII TTCGAA 1 cut(s) 1191
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 1 cut(s) 445
AxyI CCTNAGG 1 cut(s) 1046
BanI GGYRCC 1 cut(s) 490
BbsI GAAGAC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 986
BccI CCATC 7 cut(s) 15, 178, 365, 456, 502, 662, 686
BciT130I CCWGG 2 cut(s) 431, 957
BcoDI GTCTC 5 cut(s) 33, 165, 284, 354, 974
BfaI CTAG 2 cut(s) 287, 368
BfmI CTRYAG 1 cut(s) 122
BfrI CTTAAG 1 cut(s) 53
BglII AGATCT 1 cut(s) 707
BisI GCNGC 1 cut(s) 1000
BlsI GCNGC 1 cut(s) 1001
Bme1390I CCNGG 2 cut(s) 431, 957
Bme18I GGWCC 1 cut(s) 445
BmeRI GACNNNNNGTC 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 2 cut(s) 431, 957
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 3 cut(s) 142, 789, 840
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 546
Bpu14I TTCGAA 1 cut(s) 1191
BpuEI CTTGAG 2 cut(s) 866, 1095
BsaAI YACGTR 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 672
BsaHI GRCGYC 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 373, 504
Bse1I ACTGG 3 cut(s) 178, 778, 924
Bse21I CCTNAGG 1 cut(s) 1046
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 2 cut(s) 431, 957
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 5 cut(s) 75, 494, 673, 965, 1041
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 3 cut(s) 334, 373, 504
BseMII CTCAG 2 cut(s) 558, 615
BseNI ACTGG 3 cut(s) 178, 778, 924
BseXI GCAGC 1 cut(s) 986
BshNI GGYRCC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 3 cut(s) 334, 373, 504
BsmAI GTCTC 5 cut(s) 33, 165, 284, 354, 974
BsmFI GGGAC 1 cut(s) 311
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 977
Bsp119I TTCGAA 1 cut(s) 1191
Bsp143I GATC 2 cut(s) 707, 937
BspACI CCGC 1 cut(s) 488
BspCNI CTCAG 2 cut(s) 557, 616
BspLI GGNNCC 1 cut(s) 492
BspPI GGATC 1 cut(s) 945
BspT104I TTCGAA 1 cut(s) 1191
BspT107I GGYRCC 1 cut(s) 490
BspTI CTTAAG 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 33
BsrI ACTGG 3 cut(s) 178, 778, 924
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 2 cut(s) 707, 937
BssNI GRCGYC 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 431, 957
Bst4CI ACNGT 2 cut(s) 664, 893
Bst6I CTCTTC 3 cut(s) 497, 1061, 1092
BstACI GRCGYC 1 cut(s) 202
BstAFI CTTAAG 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 1191
BstC8I GCNNGC 1 cut(s) 1181
BstDEI CTNAG 6 cut(s) 353, 544, 624, 704, 754, 1046
BstENI CCTNNNNNAGG 1 cut(s) 502
BstF5I GGATG 5 cut(s) 75, 494, 673, 965, 1041
BstKTI GATC 2 cut(s) 710, 940
BstMAI GTCTC 5 cut(s) 33, 165, 284, 354, 974
BstMBI GATC 2 cut(s) 707, 937
BstNI CCWGG 2 cut(s) 431, 957
BstNSI RCATGY 2 cut(s) 733, 1120
BstSCI CCNGG 2 cut(s) 429, 955
BstSFI CTRYAG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 986
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
Bsu36I CCTNAGG 1 cut(s) 1046
BtgZI GCGATG 1 cut(s) 664
BtsCI GGATG 5 cut(s) 75, 494, 673, 965, 1041
Cac8I GCNNGC 1 cut(s) 1181
Cfr13I GGNCC 1 cut(s) 445
CseI GACGC 1 cut(s) 210
Csp6I GTAC 2 cut(s) 221, 382
CviAII CATG 3 cut(s) 730, 1117, 1176
CviQI GTAC 2 cut(s) 221, 382
DdeI CTNAG 6 cut(s) 353, 544, 624, 704, 754, 1046
DpnI GATC 2 cut(s) 709, 939
DpnII GATC 2 cut(s) 707, 937
DriI GACNNNNNGTC 1 cut(s) 303
Eam1104I CTCTTC 3 cut(s) 497, 1061, 1092
Eam1105I GACNNNNNGTC 1 cut(s) 303
EarI CTCTTC 3 cut(s) 497, 1061, 1092
Eco31I GGTCTC 1 cut(s) 33
Eco32I GATATC 1 cut(s) 744
Eco47I GGWCC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 702
Eco81I CCTNAGG 1 cut(s) 1046
Eco88I CYCGRG 1 cut(s) 977
EcoNI CCTNNNNNAGG 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 616
EcoRII CCWGG 2 cut(s) 429, 955
EcoRV GATATC 1 cut(s) 744
EcoT22I ATGCAT 1 cut(s) 171
FaeI CATG 3 cut(s) 733, 1120, 1179
FaqI GGGAC 1 cut(s) 311
FatI CATG 3 cut(s) 729, 1116, 1175
FauNDI CATATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 1000
FokI GGATG 5 cut(s) 82, 481, 680, 972, 1028
Fsp4HI GCNGC 1 cut(s) 1000
FspBI CTAG 2 cut(s) 287, 368
GluI GCNGC 1 cut(s) 1000
HapII CCGG 1 cut(s) 335
HgaI GACGC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 3 cut(s) 733, 1120, 1179
HincII GTYRAC 2 cut(s) 88, 406
HindII GTYRAC 2 cut(s) 88, 406
HindIII AAGCTT 3 cut(s) 111, 265, 1181
HinfI GANTC 7 cut(s) 245, 281, 395, 542, 835, 1126, 1193
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 1 cut(s) 335
HphI GGTGA 4 cut(s) 605, 612, 917, 1072
Hpy166II GTNNAC 3 cut(s) 88, 384, 406
Hpy188I TCNGA 3 cut(s) 609, 645, 1163
Hpy188III TCNNGA 6 cut(s) 77, 242, 977, 979, 1112, 1130
Hpy8I GTNNAC 3 cut(s) 88, 384, 406
HpyAV CCTTC 3 cut(s) 339, 576, 710
HpyCH4III ACNGT 2 cut(s) 664, 893
HpyCH4IV ACGT 3 cut(s) 211, 312, 690
HpyCH4V TGCA 5 cut(s) 133, 169, 874, 1002, 1179
HpyF3I CTNAG 6 cut(s) 353, 544, 624, 704, 754, 1046
HpySE526I ACGT 3 cut(s) 211, 312, 690
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 3 cut(s) 733, 1120, 1179
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 2 cut(s) 707, 937
LmnI GCTCC 2 cut(s) 568, 805
Lsp1109I GCAGC 1 cut(s) 986
LweI GCATC 3 cut(s) 142, 789, 840
MaeI CTAG 2 cut(s) 287, 368
MaeII ACGT 3 cut(s) 211, 312, 690
MaeIII GTNAC 5 cut(s) 272, 469, 593, 658, 1206
MalI GATC 2 cut(s) 709, 939
MboI GATC 2 cut(s) 707, 937
MboII GAAGA 9 cut(s) 49, 514, 551, 595, 751, 775, 1028, 1078, 1109
MflI RGATCY 1 cut(s) 707
MlyI GAGTC 2 cut(s) 254, 536
MmeI TCCRAC 1 cut(s) 794
MnlI CCTC 8 cut(s) 18, 57, 498, 628, 890, 1021, 1062, 1135
Mph1103I ATGCAT 1 cut(s) 171
MseI TTAA 7 cut(s) 54, 231, 263, 405, 762, 972, 1228
MslI CAYNNNNRTG 2 cut(s) 210, 369
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 2 cut(s) 431, 957
MvaI CCWGG 2 cut(s) 431, 957
NdeI CATATG 1 cut(s) 165
NdeII GATC 2 cut(s) 707, 937
NlaIII CATG 3 cut(s) 733, 1120, 1179
NlaIV GGNNCC 1 cut(s) 492
NmeAIII GCCGAG 1 cut(s) 28
NmuCI GTSAC 3 cut(s) 469, 593, 1206
NsiI ATGCAT 1 cut(s) 171
NspI RCATGY 2 cut(s) 733, 1120
NspV TTCGAA 1 cut(s) 1191
PaeR7I CTCGAG 1 cut(s) 977
PciI ACATGT 1 cut(s) 1116
PcsI WCGNNNNNNNCGW 3 cut(s) 208, 309, 687
PfeI GAWTC 5 cut(s) 281, 395, 835, 1126, 1193
PflFI GACNNNGTC 1 cut(s) 545
PfoI TCCNGGA 1 cut(s) 955
PkrI GCNGC 1 cut(s) 1001
PleI GAGTC 2 cut(s) 253, 536
PpsI GAGTC 2 cut(s) 253, 536
Ppu21I YACGTR 1 cut(s) 212
PscI ACATGT 1 cut(s) 1116
Psp1406I AACGTT 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 429, 955
PspGI CCWGG 2 cut(s) 429, 955
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 1 cut(s) 445
PsuI RGATCY 1 cut(s) 707
PsyI GACNNNGTC 1 cut(s) 545
RsaI GTAC 2 cut(s) 222, 383
RsaNI GTAC 2 cut(s) 221, 382
RseI CAYNNNNRTG 2 cut(s) 210, 369
SaqAI TTAA 7 cut(s) 54, 231, 263, 405, 762, 972, 1228
SatI GCNGC 1 cut(s) 1000
Sau3AI GATC 2 cut(s) 707, 937
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 2 cut(s) 254, 536
ScrFI CCNGG 2 cut(s) 431, 957
SfaNI GCATC 3 cut(s) 142, 789, 840
SfcI CTRYAG 1 cut(s) 122
Sfr274I CTCGAG 1 cut(s) 977
SfuI TTCGAA 1 cut(s) 1191
SinI GGWCC 1 cut(s) 445
SlaI CTCGAG 1 cut(s) 977
SmiMI CAYNNNNRTG 2 cut(s) 210, 369
SmlI CTYRAG 4 cut(s) 53, 881, 977, 1110
SmoI CTYRAG 4 cut(s) 53, 881, 977, 1110
SsiI CCGC 1 cut(s) 488
SspI AATATT 1 cut(s) 952
SspMI CTAG 2 cut(s) 287, 368
StyD4I CCNGG 2 cut(s) 429, 955
TaaI ACNGT 2 cut(s) 664, 893
TaiI ACGT 3 cut(s) 214, 315, 693
TaqI TCGA 4 cut(s) 451, 855, 978, 1191
TaqII GACCGA 1 cut(s) 293
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 5 cut(s) 281, 395, 835, 1126, 1193
Tru1I TTAA 7 cut(s) 54, 231, 263, 405, 762, 972, 1228
Tru9I TTAA 7 cut(s) 54, 231, 263, 405, 762, 972, 1228
TseFI GTSAC 3 cut(s) 469, 593, 1206
TseI GCWGC 1 cut(s) 999
Tsp45I GTSAC 3 cut(s) 469, 593, 1206
TspDTI ATGAA 7 cut(s) 408, 552, 675, 944, 976, 1035, 1110
Tth111I GACNNNGTC 1 cut(s) 545
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 445
XagI CCTNNNNNAGG 1 cut(s) 502
XapI RAATTY 3 cut(s) 436, 524, 616
XceI RCATGY 2 cut(s) 733, 1120
XhoI CTCGAG 1 cut(s) 977
XspI CTAG 2 cut(s) 287, 368
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.