Rroxscaffold_1G00011300

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000140
Physical Location & Seq
Reverse (-)
14274376 .. 14277607
3232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011300.1

Sequence Viewer

Length: 1380 bp
ATGGATGCGAGCTCTCAAAAAGGACAACCCAAAAAGCAGAAGTTATCTGGGGAAAAACAGGAAGGAGGCAGCATGAGCGTAAGCAAGTTACCTGATGTGCTTATTGAACAAATTATCTCCTTCCTTCCAACAAAGGATGCTATCCGAACAAGCATTCTGTCTAAAAGATGGGAATACCTATGGACATCACTTCCCGAGCTTAAGTTCATTCAAGGCATAAATGAAACGAGATGTTCCTTTGTGACTGCTGTGGACAGAGCACTAATTCTTCGTGGCCCTGCTGATCTAAAACAGTTTCTTCTTTTGTTTAGAGGGTTAGAACAGCTGGATGATGTATCTCTTGTTAATCGGTGGATCACTGCCATGCTAAGACGCAATGCTGAAGAGCTTATACTTCGCCTGTATAACTTTAAGGAGCTTTCACTGCCTCGTTCTTTATTTACTTCTGCAACACTCACATACTTGGACATAATTGTGCCCTGTATTTTCAACGTTCCTTCTACTGTTTGTCTATCAAGTTTAAGGATCTTGAGACTTCAATGCGTGGTGTTTTCTGATGACTGCTCAACCCAGCATCTGTTTTCGGGTTGTCCAGTCCTTGAGGACCTGATACTACGAGAATGCAGCTGGGGCAATTGCAAGTTTGTGAGTTTTTGTGCCCCAAAACTTTTGAGTTTGGAAATTGATGAAGACATTGAATTATATCCCAAAGGTTCAGATGGTTGCCAGATTATGATATTTGGTGTTAGTCTCACACGCTTTTATTACTCGGGTGAATTCCGAAATCACTATTGCTTCATTAACTCATCAGTAAACGAGGCTCGTATTTTTCATTGCTCTTATGAGAAGTCGAGGCATATGAGTTATGGGTTTAATAAGCTTCTTGGAGGACTATCTAGTGTGAAGACCCTAGCTACCAATTCTGATTCCCTTGAGGTGATTCAGACTCATGCAACAGAACTGCTTACCCACATGCCCTTGTTGAATTACCTAACCACTTTGAATTTGGAAGCAGAGGAAGTAGTTCTCTGTAGCAAAGCACTATTGACGATGCTTGGAAACTGTCCTTGCCTTCAAACTCTAATATTCTTTCAGGAGATTAACCTGTCCTCAGATGATACTAACGACGATGGGGTGTTGGAGCCACTGCCTTCATGTTTCCAGACTAGTCTTAAACAGATTGAAGTTCATGCATTCTATGGAGATGAGAATAATCTTTGTGCAATAAAGATTTTGCTAAAGAATGCCATGGTCTTGGAGAAGATGATATTAACTTGCACGTTCCATTTTGTGGAAGGATCAGAGAAGAAAAAGGATGTTAACAAACAACTATCAGATCTCCCAAAAGGGTCAGAAAGCTGTGAAATTGTTCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

459

Amino Acids

51.8

Weight (kDa)

5.53

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 28 - 66 3.5e-09 F-box domain
LRR_At5g56370 PF24758 115 - 226 4.8e-11 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 383 - 424 7e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1291
AclI AACGTT 1 cut(s) 492
AclWI GGATC 3 cut(s) 362, 533, 1306
AcsI RAATTY 2 cut(s) 776, 1003
AcuI CTGAAG 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 1291
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 9 cut(s) 107, 212, 490, 539, 698, 985, 1003, 1076, 1184
AhlI ACTAGT 1 cut(s) 1166
AluBI AGCT 9 cut(s) 12, 199, 325, 388, 418, 627, 880, 914, 1359
AluI AGCT 9 cut(s) 12, 199, 325, 388, 418, 627, 880, 914, 1359
Alw21I GWGCWC 2 cut(s) 14, 262
Alw26I GTCTC 2 cut(s) 526, 755
AlwI GGATC 3 cut(s) 362, 533, 1306
AlwNI CAGNNNCTG 1 cut(s) 577
Ama87I CYCGRG 2 cut(s) 194, 769
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 69, 624
ApoI RAATTY 2 cut(s) 776, 1003
Asp700I GAANNNNTTC 2 cut(s) 1023, 1368
AspS9I GGNCC 2 cut(s) 275, 604
AsuHPI GGTGA 2 cut(s) 785, 949
AvaI CYCGRG 2 cut(s) 194, 769
AvaII GGWCC 1 cut(s) 604
BaeGI GKGCMC 2 cut(s) 480, 661
BanII GRGCYC 1 cut(s) 14
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
BbsI GAAGAC 2 cut(s) 696, 911
Bbv12I GWGCWC 2 cut(s) 14, 262
BbvI GCAGC 2 cut(s) 81, 636
BccI CCATC 3 cut(s) 162, 713, 1124
BcoDI GTCTC 2 cut(s) 526, 755
BcuI ACTAGT 1 cut(s) 1166
BfaI CTAG 3 cut(s) 897, 911, 1167
BfmI CTRYAG 1 cut(s) 1030
BfrI CTTAAG 1 cut(s) 200
BglII AGATCT 1 cut(s) 1336
BisI GCNGC 2 cut(s) 70, 625
BlsI GCNGC 2 cut(s) 71, 626
Bme18I GGWCC 1 cut(s) 604
BmeT110I CYCGRG 2 cut(s) 194, 769
BmgT120I GGNCC 2 cut(s) 275, 604
BmiI GGNNCC 1 cut(s) 1143
BmsI GCATC 3 cut(s) 127, 583, 1041
BpiI GAAGAC 2 cut(s) 696, 911
BpuEI CTTGAG 3 cut(s) 550, 620, 953
BsaJI CCNNGG 1 cut(s) 1248
Bsc4I CCNNNNNNNGG 1 cut(s) 1291
Bse1I ACTGG 1 cut(s) 593
Bse3DI GCAATG 2 cut(s) 382, 832
BseDI CCNNGG 1 cut(s) 1248
BseGI GGATG 4 cut(s) 10, 142, 334, 1321
BseLI CCNNNNNNNGG 1 cut(s) 1291
BseMI GCAATG 2 cut(s) 382, 832
BseMII CTCAG 1 cut(s) 1125
BseNI ACTGG 1 cut(s) 593
BseSI GKGCMC 2 cut(s) 480, 661
BseXI GCAGC 2 cut(s) 81, 636
BseYI CCCAGC 2 cut(s) 570, 627
BshFI GGCC 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 14, 262
BsiHKCI CYCGRG 2 cut(s) 194, 769
BslI CCNNNNNNNGG 1 cut(s) 1291
BsmAI GTCTC 2 cut(s) 526, 755
BsmI GAATGC 4 cut(s) 153, 626, 1193, 1249
BsnI GGCC 1 cut(s) 276
BsoBI CYCGRG 2 cut(s) 194, 769
Bsp1286I GDGCHC 4 cut(s) 14, 262, 480, 661
Bsp143I GATC 5 cut(s) 283, 354, 525, 1298, 1336
Bsp19I CCATGG 1 cut(s) 1248
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 1124
BspLI GGNNCC 1 cut(s) 1143
BspPI GGATC 3 cut(s) 362, 533, 1306
BspQI GCTCTTC 1 cut(s) 378
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 382, 832
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 1 cut(s) 1248
BssMI GATC 5 cut(s) 283, 354, 525, 1298, 1336
BssT1I CCWWGG 1 cut(s) 1248
Bst4CI ACNGT 3 cut(s) 294, 505, 1064
Bst6I CTCTTC 1 cut(s) 378
BstAFI CTTAAG 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 368, 1111
BstDSI CCRYGG 1 cut(s) 1248
BstF5I GGATG 4 cut(s) 10, 142, 334, 1321
BstKTI GATC 5 cut(s) 286, 357, 528, 1301, 1339
BstMAI GTCTC 2 cut(s) 526, 755
BstMBI GATC 5 cut(s) 283, 354, 525, 1298, 1336
BstMWI GCNNNNNNNGC 3 cut(s) 75, 424, 630
BstNSI RCATGY 1 cut(s) 976
BstSFI CTRYAG 1 cut(s) 1030
BstSLI GKGCMC 2 cut(s) 480, 661
BstV1I GCAGC 2 cut(s) 81, 636
BstV2I GAAGAC 2 cut(s) 696, 911
BstX2I RGATCY 2 cut(s) 525, 1336
BstXI CCANNNNNNTGG 1 cut(s) 1255
BstYI RGATCY 2 cut(s) 525, 1336
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 1248
BtsCI GGATG 4 cut(s) 10, 142, 334, 1321
BtsI GCAGTG 3 cut(s) 357, 422, 1145
BtsIMutI CAGTG 3 cut(s) 357, 422, 1145
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 577
Cfr13I GGNCC 2 cut(s) 275, 604
CseI GACGC 1 cut(s) 381
CviAII CATG 7 cut(s) 73, 364, 950, 973, 1155, 1190, 1249
DdeI CTNAG 2 cut(s) 368, 1111
DpnI GATC 5 cut(s) 285, 356, 527, 1300, 1338
DpnII GATC 5 cut(s) 283, 354, 525, 1298, 1336
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 1248
Eco24I GRGCYC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 604
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 402
Eco88I CYCGRG 2 cut(s) 194, 769
EcoICRI GAGCTC 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 776
EcoT14I CCWWGG 1 cut(s) 1248
EcoT22I ATGCAT 1 cut(s) 1195
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 1248
FaeI CATG 7 cut(s) 76, 367, 953, 976, 1158, 1193, 1252
FatI CATG 7 cut(s) 72, 363, 949, 972, 1154, 1189, 1248
FauNDI CATATG 1 cut(s) 858
Fnu4HI GCNGC 2 cut(s) 70, 625
FokI GGATG 4 cut(s) 17, 149, 341, 1328
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 2 cut(s) 70, 625
FspBI CTAG 3 cut(s) 897, 911, 1167
GluI GCNGC 2 cut(s) 70, 625
GsaI CCCAGC 2 cut(s) 574, 631
HaeIII GGCC 1 cut(s) 276
HgaI GACGC 1 cut(s) 381
Hin1II CATG 7 cut(s) 76, 367, 953, 976, 1158, 1193, 1252
HincII GTYRAC 1 cut(s) 1321
HindII GTYRAC 1 cut(s) 1321
HindIII AAGCTT 1 cut(s) 878
HinfI GANTC 3 cut(s) 926, 940, 946
HpaI GTTAAC 1 cut(s) 1321
HphI GGTGA 2 cut(s) 785, 949
Hpy166II GTNNAC 3 cut(s) 253, 814, 1321
Hpy188III TCNNGA 4 cut(s) 194, 529, 1094, 1162
Hpy8I GTNNAC 3 cut(s) 253, 814, 1321
Hpy99I CGWCG 1 cut(s) 1130
HpyAV CCTTC 7 cut(s) 56, 130, 134, 507, 1082, 1161, 1289
HpyCH4III ACNGT 3 cut(s) 294, 505, 1064
HpyCH4IV ACGT 2 cut(s) 492, 1280
HpyCH4V TGCA 7 cut(s) 449, 624, 639, 953, 1193, 1223, 1278
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 424, 630
HpyF3I CTNAG 2 cut(s) 368, 1111
HpySE526I ACGT 2 cut(s) 492, 1280
Hsp92II CATG 7 cut(s) 76, 367, 953, 976, 1158, 1193, 1252
KspAI GTTAAC 1 cut(s) 1321
Kzo9I GATC 5 cut(s) 283, 354, 525, 1298, 1336
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 2 cut(s) 415, 1141
Lsp1109I GCAGC 2 cut(s) 81, 636
LweI GCATC 3 cut(s) 127, 583, 1041
MaeI CTAG 3 cut(s) 897, 911, 1167
MaeII ACGT 2 cut(s) 492, 1280
MaeIII GTNAC 2 cut(s) 87, 241
MalI GATC 5 cut(s) 285, 356, 527, 1300, 1338
MboI GATC 5 cut(s) 283, 354, 525, 1298, 1336
MboII GAAGA 7 cut(s) 260, 290, 395, 701, 916, 1273, 1318
MfeI CAATTG 1 cut(s) 634
MflI RGATCY 2 cut(s) 525, 1336
MhlI GDGCHC 4 cut(s) 14, 262, 480, 661
MlyI GAGTC 1 cut(s) 940
MmeI TCCRAC 2 cut(s) 152, 1119
Mph1103I ATGCAT 1 cut(s) 1195
MroXI GAANNNNTTC 2 cut(s) 1023, 1368
MslI CAYNNNNRTG 2 cut(s) 362, 473
MspA1I CMGCKG 2 cut(s) 325, 627
MspCI CTTAAG 1 cut(s) 200
MunI CAATTG 1 cut(s) 634
Mva1269I GAATGC 4 cut(s) 153, 626, 1193, 1249
MwoI GCNNNNNNNGC 3 cut(s) 75, 424, 630
NcoI CCATGG 1 cut(s) 1248
NdeI CATATG 1 cut(s) 858
NdeII GATC 5 cut(s) 283, 354, 525, 1298, 1336
NlaIII CATG 7 cut(s) 76, 367, 953, 976, 1158, 1193, 1252
NlaIV GGNNCC 1 cut(s) 1143
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 1195
NspI RCATGY 1 cut(s) 976
PciSI GCTCTTC 1 cut(s) 378
PctI GAATGC 4 cut(s) 153, 626, 1193, 1249
PdmI GAANNNNTTC 2 cut(s) 1023, 1368
PfeI GAWTC 2 cut(s) 926, 940
PflMI CCANNNNNTGG 1 cut(s) 1291
PkrI GCNGC 2 cut(s) 71, 626
PleI GAGTC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 940
PpuMI RGGWCCY 1 cut(s) 604
Psp124BI GAGCTC 1 cut(s) 14
Psp1406I AACGTT 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 604
PspFI CCCAGC 2 cut(s) 570, 627
PspN4I GGNNCC 1 cut(s) 1143
PspPI GGNCC 2 cut(s) 275, 604
PspPPI RGGWCCY 1 cut(s) 604
PstNI CAGNNNCTG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 525, 1336
PvuII CAGCTG 2 cut(s) 325, 627
RseI CAYNNNNRTG 2 cut(s) 362, 473
SacI GAGCTC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 378
SatI GCNGC 2 cut(s) 70, 625
Sau3AI GATC 5 cut(s) 283, 354, 525, 1298, 1336
Sau96I GGNCC 2 cut(s) 275, 604
SchI GAGTC 1 cut(s) 940
SduI GDGCHC 4 cut(s) 14, 262, 480, 661
SfaNI GCATC 3 cut(s) 127, 583, 1041
SfcI CTRYAG 1 cut(s) 1030
SinI GGWCC 1 cut(s) 604
SmiMI CAYNNNNRTG 2 cut(s) 362, 473
SmlI CTYRAG 4 cut(s) 200, 529, 599, 932
SmoI CTYRAG 4 cut(s) 200, 529, 599, 932
SpeI ACTAGT 1 cut(s) 1166
SspI AATATT 1 cut(s) 1086
SspMI CTAG 3 cut(s) 897, 911, 1167
SstI GAGCTC 1 cut(s) 14
StyI CCWWGG 1 cut(s) 1248
TaaI ACNGT 3 cut(s) 294, 505, 1064
TaiI ACGT 2 cut(s) 495, 1283
TaqI TCGA 1 cut(s) 851
TfiI GAWTC 2 cut(s) 926, 940
TscAI CASTG 3 cut(s) 364, 429, 1152
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 69, 624
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 7 cut(s) 196, 237, 702, 787, 821, 1143, 1178
TspRI CASTG 3 cut(s) 364, 429, 1152
Van91I CCANNNNNTGG 1 cut(s) 1291
Vha464I CTTAAG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 604
XapI RAATTY 2 cut(s) 776, 1003
XceI RCATGY 1 cut(s) 976
XcmI CCANNNNNNNNNTGG 1 cut(s) 1003
XmnI GAANNNNTTC 2 cut(s) 1023, 1368
XspI CTAG 3 cut(s) 897, 911, 1167
Zsp2I ATGCAT 1 cut(s) 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.