Rh1BG421500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000140
Physical Location & Seq
Reverse (-)
54153582 .. 54154985
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG421500.1

Sequence Viewer

Length: 840 bp
ATGGCTCGTAATACCTCTGAAGCAAACTTGCAAATTGCACCTGAAAAGCTTGAAGACAATGCCAAGACTTTGAGTGATTTACCTGATGACATTCTTGGCCACATCTTATCCTTCATGGAAACAAGAGAAGCAGTTAGAACGAGTACATTGTCAAAACGGTGGAAGTACGTAAGGACATTCACTCCCAACCTCGTCTTCGATGATTTCCGCTTCTGGTTTATAAAAGAAAACCTGTGGAAACAGGTTGGGGATTATGTAGCAAGGGAGATCCACCTTCGAGGTTTCGTGAGAAGCTTTGGTTTTGAAGTTCGTCATTATGGAATCGTTGCTGCCCTCTTGAGGTCTTGGATCACGGAGCTAGTAATGCGTAATGTTCAAGATGTTTCCTTGCTTCTCAATTCAAGTGAGGAACACAATGTGCTACCTGACTGCTTGTTTACTTGCAAATCACTTGTGCATTTTAAATTTAGTATAGGAGGGATCGTTTCCCTCGAACTTCCCGCTACAATATATTTTTCGAATCTCAAAACATTGAGTCTTAGAAATGTTCGATTCTTAAATGAGCACTCGACGAACCAGTTGTTTTCTAGTTGCCCGGTGCTTGAAGATTTAACCCTCAATGACTGCCGTTGGTCGGATTTCCAGCTTATCAATATCTGTGCACCCAAGCTCTTGAGACTGACTATATTCGAACGTGTGCACTTCCGTTATACTAATCCTCATGGCTGCCGGATAGCGGTTTTCGGACCTAACTTGACAGATTTTGTTATGGTGGTGACTTTTTCAACGAGCATTACTTTATCATACTTGACCTTAACTTTTAGGTTCCAAAAGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

279

Amino Acids

32.36

Weight (kDa)

8.52

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 56 1.1e-08 F-box domain
LRR_At5g56370 PF24758 113 - 230 2.7e-14 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AciI CCGC 3 cut(s) 208, 501, 737
AclWI GGATC 3 cut(s) 262, 356, 488
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 418
AfaI GTAC 2 cut(s) 145, 167
AfiI CCNNNNNNNGG 3 cut(s) 339, 634, 736
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 6 cut(s) 53, 305, 377, 402, 605, 786
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 5 cut(s) 49, 294, 358, 646, 670
AluI AGCT 5 cut(s) 49, 294, 358, 646, 670
Alw21I GWGCWC 3 cut(s) 567, 664, 702
Alw26I GTCTC 1 cut(s) 670
Alw44I GTGCAC 2 cut(s) 660, 698
AlwI GGATC 3 cut(s) 262, 356, 488
AoxI GGCC 1 cut(s) 97
ApaLI GTGCAC 2 cut(s) 660, 698
ApeKI GCWGC 2 cut(s) 329, 726
ApoI RAATTY 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 746
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 1 cut(s) 787
AsuII TTCGAA 2 cut(s) 518, 690
AvaII GGWCC 1 cut(s) 746
BaeGI GKGCMC 2 cut(s) 664, 702
BalI TGGCCA 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 60, 187
Bbv12I GWGCWC 3 cut(s) 567, 664, 702
BbvI GCAGC 2 cut(s) 316, 713
BceAI ACGGC 1 cut(s) 612
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 670
BfaI CTAG 2 cut(s) 359, 588
BisI GCNGC 2 cut(s) 330, 727
BlsI GCNGC 2 cut(s) 331, 728
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 746
BmiI GGNNCC 1 cut(s) 827
BmrFI CCNGG 1 cut(s) 596
BpiI GAAGAC 2 cut(s) 60, 187
Bpu14I TTCGAA 2 cut(s) 518, 690
BpuEI CTTGAG 2 cut(s) 358, 694
BpuMI CCSGG 1 cut(s) 596
BsaAI YACGTR 1 cut(s) 169
BsaXI ACNNNNNCTCC 4 cut(s) 166, 196, 468, 498
Bsc4I CCNNNNNNNGG 3 cut(s) 339, 634, 736
Bse1I ACTGG 1 cut(s) 577
BseLI CCNNNNNNNGG 3 cut(s) 339, 634, 736
BseNI ACTGG 1 cut(s) 577
BseSI GKGCMC 2 cut(s) 664, 702
BseXI GCAGC 2 cut(s) 316, 713
BshFI GGCC 1 cut(s) 99
BsiHKAI GWGCWC 3 cut(s) 567, 664, 702
BsiSI CCGG 2 cut(s) 596, 730
BslI CCNNNNNNNGG 3 cut(s) 339, 634, 736
BsmAI GTCTC 1 cut(s) 670
BsnI GGCC 1 cut(s) 99
Bsp119I TTCGAA 2 cut(s) 518, 690
Bsp1286I GDGCHC 3 cut(s) 567, 664, 702
Bsp143I GATC 3 cut(s) 267, 348, 480
BspACI CCGC 3 cut(s) 208, 501, 737
BspANI GGCC 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 827
BspPI GGATC 3 cut(s) 262, 356, 488
BspT104I TTCGAA 2 cut(s) 518, 690
BsrI ACTGG 1 cut(s) 577
BssMI GATC 3 cut(s) 267, 348, 480
Bst4CI ACNGT 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 169
BstBI TTCGAA 2 cut(s) 518, 690
BstDEI CTNAG 1 cut(s) 539
BstKTI GATC 3 cut(s) 270, 351, 483
BstMAI GTCTC 1 cut(s) 670
BstMBI GATC 3 cut(s) 267, 348, 480
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 594
BstSLI GKGCMC 2 cut(s) 664, 702
BstSNI TACGTA 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 316, 713
BstV2I GAAGAC 2 cut(s) 60, 187
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BsuRI GGCC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 746
Csp6I GTAC 2 cut(s) 144, 166
CviAII CATG 2 cut(s) 115, 722
CviJI RGCY 8 cut(s) 5, 49, 99, 294, 358, 646, 670, 726
CviKI_1 RGCY 8 cut(s) 5, 49, 99, 294, 358, 646, 670, 726
CviQI GTAC 2 cut(s) 144, 166
DdeI CTNAG 1 cut(s) 539
DpnI GATC 3 cut(s) 269, 350, 482
DpnII GATC 3 cut(s) 267, 348, 480
DraI TTTAAA 1 cut(s) 463
DraIII CACNNNGTG 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 97
Eco105I TACGTA 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 746
Eco57I CTGAAG 1 cut(s) 39
FaeI CATG 2 cut(s) 118, 725
FatI CATG 2 cut(s) 114, 721
FauI CCCGC 1 cut(s) 508
Fnu4HI GCNGC 2 cut(s) 330, 727
Fsp4HI GCNGC 2 cut(s) 330, 727
FspBI CTAG 2 cut(s) 359, 588
GluI GCNGC 2 cut(s) 330, 727
HaeIII GGCC 1 cut(s) 99
HapII CCGG 2 cut(s) 596, 730
Hin1II CATG 2 cut(s) 118, 725
HindIII AAGCTT 2 cut(s) 47, 292
HinfI GANTC 4 cut(s) 321, 520, 535, 552
HpaII CCGG 2 cut(s) 596, 730
HphI GGTGA 1 cut(s) 787
Hpy166II GTNNAC 3 cut(s) 438, 662, 700
Hpy188I TCNGA 3 cut(s) 19, 637, 746
Hpy188III TCNNGA 4 cut(s) 286, 337, 377, 673
Hpy8I GTNNAC 3 cut(s) 438, 662, 700
Hpy99I CGWCG 1 cut(s) 574
HpyAV CCTTC 2 cut(s) 121, 284
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 2 cut(s) 168, 694
HpyCH4V TGCA 6 cut(s) 31, 38, 444, 457, 662, 700
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 2 cut(s) 168, 694
Hsp92II CATG 2 cut(s) 118, 725
Kzo9I GATC 3 cut(s) 267, 348, 480
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 316, 713
MaeI CTAG 2 cut(s) 359, 588
MaeII ACGT 2 cut(s) 168, 694
MaeIII GTNAC 1 cut(s) 775
MalI GATC 3 cut(s) 269, 350, 482
MboI GATC 3 cut(s) 267, 348, 480
MboII GAAGA 3 cut(s) 65, 187, 617
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 3 cut(s) 567, 664, 702
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 33, 397, 464
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 544
MmeI TCCRAC 1 cut(s) 615
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 4 cut(s) 462, 557, 611, 815
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 2 cut(s) 596, 730
MspR9I CCNGG 1 cut(s) 596
MwoI GCNNNNNNNGC 1 cut(s) 364
NciI CCSGG 1 cut(s) 596
NdeII GATC 3 cut(s) 267, 348, 480
NlaIII CATG 2 cut(s) 118, 725
NlaIV GGNNCC 1 cut(s) 827
NmuCI GTSAC 1 cut(s) 775
NspV TTCGAA 2 cut(s) 518, 690
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PfeI GAWTC 3 cut(s) 321, 520, 552
PkrI GCNGC 2 cut(s) 331, 728
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
Ppu21I YACGTR 1 cut(s) 169
PsiI TTATAA 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 827
PspPI GGNCC 1 cut(s) 746
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 2 cut(s) 145, 167
RsaNI GTAC 2 cut(s) 144, 166
SaqAI TTAA 4 cut(s) 462, 557, 611, 815
SatI GCNGC 2 cut(s) 330, 727
Sau3AI GATC 3 cut(s) 267, 348, 480
Sau96I GGNCC 1 cut(s) 746
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 3 cut(s) 567, 664, 702
SfuI TTCGAA 2 cut(s) 518, 690
SinI GGWCC 1 cut(s) 746
SmlI CTYRAG 2 cut(s) 337, 673
SmoI CTYRAG 2 cut(s) 337, 673
SnaBI TACGTA 1 cut(s) 169
Sse9I AATT 3 cut(s) 33, 397, 464
SsiI CCGC 3 cut(s) 208, 501, 737
SspMI CTAG 2 cut(s) 359, 588
StyD4I CCNGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 2 cut(s) 171, 697
TaqI TCGA 7 cut(s) 198, 277, 492, 518, 550, 569, 690
TasI AATT 3 cut(s) 33, 397, 464
TatI WGTACW 1 cut(s) 143
TfiI GAWTC 3 cut(s) 321, 520, 552
Tru1I TTAA 4 cut(s) 462, 557, 611, 815
Tru9I TTAA 4 cut(s) 462, 557, 611, 815
TseFI GTSAC 1 cut(s) 775
TseI GCWGC 2 cut(s) 329, 726
Tsp45I GTSAC 1 cut(s) 775
TspDTI ATGAA 1 cut(s) 103
TspGWI ACGGA 2 cut(s) 368, 695
VneI GTGCAC 2 cut(s) 660, 698
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 1 cut(s) 464
XspI CTAG 2 cut(s) 359, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.