Rmu_sc0000726.1_g000007

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000726.1
OG0000140
Physical Location & Seq
Reverse (-)
26785 .. 28414
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000726.1_g000007.1.cds

Sequence Viewer

Length: 1170 bp
atggatgtaagttctcaaatggtaagacccaaaaggcagaaatgggatggtggagaagagatggtcagagagaaaaagggtttaagtgatttacctgatgtggttattgcaaaaatcatctcctcacttccaacgaaggaggctattagaacaagcatactgtctaaaagatgggaatacctatggacatcaattcccaatcttgaattttatccagggaatgctaagagatctctcttggtgaatgttgtagatagagcacttcttttacgcggcccttctgatataaaacggttcgatcttttgtttccagtgctcggtgatgcatctcatgttcatgcgtggatctctgccatagtacggcgcaatgttgaagacttttctatagggctggaaagccacaaggaaccattttcattgcctcattctttacttacttctgccacattgaaagtgctgaacctgtatctcccctgtagtttcaaagttccctctactatctgtttctcaagtctaagggaattgtctctttgtttggtggtgttttctgatgactactcaacccagcagctgttttctggttgcccagtccttgaaaaattatatttttcggagtgcaattgggagaatatcaagtttgttagtatttgtgctcctaatcttctgaagttgagcatccatgaaagcgagttgccaatttctggaggttcaaatgtgtgtcagattatggtggctctaactgctgcatcagaacttcttgcccagatgcccatgttcaatgatctagccaccttgatattcgatgggagtgcgacagatcttatactatcattgaggatactccaaaactgtccttgtcttcgggatctggtattctgtgagggggttaggctgtgctcagatgatgcaaaagatgatggaatgttggatattccactgcctccatgtttctggaccagtcttaaagagattcaagtcgttgaattttgtggaaacaagaatgaggttcgtgcattaaggattttgctaaaaaatgcaattgtcttggagaatatgtttgtaagctactgcggtacccttgaaggaaaaactgagaagaaaagggatcttaacaaacagatatcggatctcccaaaagggtcacaatgctgtgaaattgattatgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

389

Amino Acids

43.65

Weight (kDa)

5.58

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1073
AccB1I GGYRCC 1 cut(s) 1073
AccB7I CCANNNNNTGG 1 cut(s) 701
AccII CGCG 1 cut(s) 273
AciI CCGC 2 cut(s) 273, 1071
AclWI GGATC 4 cut(s) 353, 873, 1113, 1134
AcsI RAATTY 2 cut(s) 206, 983
AcuI CTGAAG 1 cut(s) 686
AfaI GTAC 2 cut(s) 360, 1075
AfiI CCNNNNNNNGG 3 cut(s) 317, 360, 701
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 571, 1065
AluI AGCT 2 cut(s) 571, 1065
Alw21I GWGCWC 4 cut(s) 262, 318, 655, 899
Alw26I GTCTC 1 cut(s) 531
AlwI GGATC 4 cut(s) 353, 873, 1113, 1134
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 2 cut(s) 568, 743
ApoI RAATTY 2 cut(s) 206, 983
Asp718I GGTACC 1 cut(s) 1073
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 275, 954
AsuHPI GGTGA 2 cut(s) 253, 332
AvaII GGWCC 1 cut(s) 954
BaeI ACNNNNGTAYC 2 cut(s) 1057, 1090
BanI GGYRCC 1 cut(s) 1073
BbsI GAAGAC 2 cut(s) 381, 851
Bbv12I GWGCWC 4 cut(s) 262, 318, 655, 899
BbvI GCAGC 2 cut(s) 580, 730
BccI CCATC 5 cut(s) 41, 55, 165, 797, 911
BceAI ACGGC 1 cut(s) 377
BcgI CGANNNNNNTGC 2 cut(s) 791, 825
BciT130I CCWGG 1 cut(s) 216
BciVI GTATCC 1 cut(s) 831
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 1 cut(s) 785
BfmI CTRYAG 2 cut(s) 384, 475
BfuI GTATCC 1 cut(s) 831
BglII AGATCT 2 cut(s) 230, 817
BisI GCNGC 3 cut(s) 274, 569, 744
BlsI GCNGC 3 cut(s) 275, 570, 745
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 954
BmgT120I GGNCC 2 cut(s) 275, 954
BmiI GGNNCC 2 cut(s) 408, 1075
BmrFI CCNGG 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 6 cut(s) 313, 335, 684, 755, 756, 895
BmuI ACTGGG 1 cut(s) 581
BpiI GAAGAC 2 cut(s) 381, 851
BpmI CTGGAG 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 1040, 1070
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 360, 701
Bse1I ACTGG 3 cut(s) 311, 587, 957
Bse3DI GCAATG 2 cut(s) 373, 416
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 3 cut(s) 10, 52, 675
BseLI CCNNNNNNNGG 3 cut(s) 317, 360, 701
BseMI GCAATG 2 cut(s) 373, 416
BseMII CTCAG 2 cut(s) 912, 1083
BseNI ACTGG 3 cut(s) 311, 587, 957
BseRI GAGGAG 1 cut(s) 112
BseXI GCAGC 2 cut(s) 580, 730
BseYI CCCAGC 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 1073
BsiHKAI GWGCWC 4 cut(s) 262, 318, 655, 899
BslI CCNNNNNNNGG 3 cut(s) 317, 360, 701
BsmAI GTCTC 1 cut(s) 531
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 1 cut(s) 276
Bsp1286I GDGCHC 4 cut(s) 262, 318, 655, 899
Bsp143I GATC 8 cut(s) 230, 298, 345, 781, 817, 865, 1105, 1126
BspACI CCGC 2 cut(s) 273, 1071
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 911, 1084
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 408, 1075
BspPI GGATC 4 cut(s) 353, 873, 1113, 1134
BspT107I GGYRCC 1 cut(s) 1073
BsrDI GCAATG 2 cut(s) 373, 416
BsrI ACTGG 3 cut(s) 311, 587, 957
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 8 cut(s) 230, 298, 345, 781, 817, 865, 1105, 1126
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 162, 294, 851
Bst6I CTCTTC 1 cut(s) 51
BstDEI CTNAG 4 cut(s) 225, 515, 898, 1092
BstF5I GGATG 3 cut(s) 10, 52, 675
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 8 cut(s) 233, 301, 348, 784, 820, 868, 1108, 1129
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 8 cut(s) 230, 298, 345, 781, 817, 865, 1105, 1126
BstMWI GCNNNNNNNGC 1 cut(s) 740
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 2 cut(s) 384, 475
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 580, 730
BstV2I GAAGAC 2 cut(s) 381, 851
BstX2I RGATCY 6 cut(s) 230, 345, 817, 865, 1105, 1126
BstXI CCANNNNNNTGG 1 cut(s) 951
BstYI RGATCY 6 cut(s) 230, 345, 817, 865, 1105, 1126
BsuI GTATCC 1 cut(s) 831
BsuRI GGCC 1 cut(s) 276
BtsCI GGATG 3 cut(s) 10, 52, 675
BtsI GCAGTG 1 cut(s) 935
BtsIMutI CAGTG 2 cut(s) 318, 935
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 275, 954
Csp6I GTAC 2 cut(s) 359, 1074
CviAII CATG 5 cut(s) 332, 338, 680, 772, 945
CviJI RGCY 9 cut(s) 143, 276, 391, 399, 571, 734, 788, 892, 1065
CviKI_1 RGCY 9 cut(s) 143, 276, 391, 399, 571, 734, 788, 892, 1065
CviQI GTAC 2 cut(s) 359, 1074
DdeI CTNAG 4 cut(s) 225, 515, 898, 1092
DpnI GATC 8 cut(s) 232, 300, 347, 783, 819, 867, 1107, 1128
DpnII GATC 8 cut(s) 230, 298, 345, 781, 817, 865, 1105, 1126
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco32I GATATC 1 cut(s) 1122
Eco47I GGWCC 1 cut(s) 954
Eco57I CTGAAG 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 214
EcoRV GATATC 1 cut(s) 1122
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 5 cut(s) 335, 341, 683, 775, 948
FatI CATG 5 cut(s) 331, 337, 679, 771, 944
Fnu4HI GCNGC 3 cut(s) 274, 569, 744
FokI GGATG 3 cut(s) 17, 59, 662
Fsp4HI GCNGC 3 cut(s) 274, 569, 744
FspBI CTAG 1 cut(s) 785
GlaI GCGC 1 cut(s) 365
GluI GCNGC 3 cut(s) 274, 569, 744
GsaI CCCAGC 1 cut(s) 568
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 1 cut(s) 276
HhaI GCGC 1 cut(s) 366
Hin1II CATG 5 cut(s) 335, 341, 683, 775, 948
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 1 cut(s) 970
HphI GGTGA 2 cut(s) 253, 332
Hpy188I TCNGA 9 cut(s) 68, 283, 550, 613, 666, 723, 751, 901, 1126
Hpy188III TCNNGA 4 cut(s) 203, 702, 863, 952
HpyAV CCTTC 3 cut(s) 130, 288, 1076
HpyCH4III ACNGT 3 cut(s) 162, 294, 851
HpyCH4V TGCA 7 cut(s) 110, 326, 618, 746, 908, 1013, 1037
HpyF10VI GCNNNNNNNGC 1 cut(s) 740
HpyF3I CTNAG 4 cut(s) 225, 515, 898, 1092
Hsp92II CATG 5 cut(s) 335, 341, 683, 775, 948
HspAI GCGC 1 cut(s) 364
KpnI GGTACC 1 cut(s) 1077
Kzo9I GATC 8 cut(s) 230, 298, 345, 781, 817, 865, 1105, 1126
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 2 cut(s) 580, 730
LweI GCATC 6 cut(s) 313, 335, 684, 755, 756, 895
MaeI CTAG 1 cut(s) 785
MaeIII GTNAC 1 cut(s) 1140
MalI GATC 8 cut(s) 232, 300, 347, 783, 819, 867, 1107, 1128
MboI GATC 8 cut(s) 230, 298, 345, 781, 817, 865, 1105, 1126
MboII GAAGA 5 cut(s) 68, 386, 653, 851, 1108
MfeI CAATTG 2 cut(s) 619, 1038
MflI RGATCY 6 cut(s) 230, 345, 817, 865, 1105, 1126
MhlI GDGCHC 4 cut(s) 262, 318, 655, 899
MluCI AATT 9 cut(s) 192, 206, 521, 599, 619, 696, 983, 1038, 1155
MmeI TCCRAC 2 cut(s) 155, 906
MnlI CCTC 9 cut(s) 133, 133, 432, 502, 698, 828, 874, 951, 997
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 5 cut(s) 83, 963, 1016, 1110, 1168
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 571
MspR9I CCNGG 1 cut(s) 216
MunI CAATTG 2 cut(s) 619, 1038
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 740
NdeII GATC 8 cut(s) 230, 298, 345, 781, 817, 865, 1105, 1126
NlaIII CATG 5 cut(s) 335, 341, 683, 775, 948
NlaIV GGNNCC 2 cut(s) 408, 1075
NmuCI GTSAC 1 cut(s) 1140
NsiI ATGCAT 1 cut(s) 328
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 970
PflMI CCANNNNNTGG 1 cut(s) 701
PkrI GCNGC 3 cut(s) 275, 570, 745
Psp6I CCWGG 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 408, 1075
PspPI GGNCC 2 cut(s) 275, 954
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 6 cut(s) 230, 345, 817, 865, 1105, 1126
PvuII CAGCTG 1 cut(s) 571
RsaI GTAC 2 cut(s) 360, 1075
RsaNI GTAC 2 cut(s) 359, 1074
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 5 cut(s) 83, 963, 1016, 1110, 1168
SatI GCNGC 3 cut(s) 274, 569, 744
Sau3AI GATC 8 cut(s) 230, 298, 345, 781, 817, 865, 1105, 1126
Sau96I GGNCC 2 cut(s) 275, 954
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 4 cut(s) 262, 318, 655, 899
SetI ASST 8 cut(s) 97, 183, 465, 573, 709, 794, 1008, 1067
SfaNI GCATC 6 cut(s) 313, 335, 684, 755, 756, 895
SfcI CTRYAG 2 cut(s) 384, 475
SinI GGWCC 1 cut(s) 954
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 9 cut(s) 192, 206, 521, 599, 619, 696, 983, 1038, 1155
SsiI CCGC 2 cut(s) 273, 1071
SspMI CTAG 1 cut(s) 785
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 3 cut(s) 162, 294, 851
TaqI TCGA 2 cut(s) 297, 801
TasI AATT 9 cut(s) 192, 206, 521, 599, 619, 696, 983, 1038, 1155
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 1 cut(s) 970
Tru1I TTAA 5 cut(s) 83, 963, 1016, 1110, 1168
Tru9I TTAA 5 cut(s) 83, 963, 1016, 1110, 1168
TscAI CASTG 2 cut(s) 318, 942
TseFI GTSAC 1 cut(s) 1140
TseI GCWGC 2 cut(s) 568, 743
Tsp45I GTSAC 1 cut(s) 1140
TspDTI ATGAA 3 cut(s) 326, 405, 696
TspRI CASTG 2 cut(s) 318, 942
Van91I CCANNNNNTGG 1 cut(s) 701
VpaK11BI GGWCC 1 cut(s) 954
XapI RAATTY 2 cut(s) 206, 983
XspI CTAG 1 cut(s) 785
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.