AT1G55030

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000140
Physical Location & Seq
Reverse (-)
20530417 .. 20532151
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55030.2

Sequence Viewer

Length: 1269 bp
ATGAACAATCGAGGTGCTGTTACGGACATGATTAGTCAGTTACCTGAACCTTTGATTCTCCAGATATTGGGCTCACTTCCTACGAAAGTTGCCATAACCACGAGTGTTTTGTCTAAACAATGGCAGTCTCATTGGAAAATGATGCCCAAACTCGAGTTTGATTCTTTCCTTCGCAGACTTGACCTGGAGAATGTTACCAAGTGTTTGCTTTCACATAAGGCTCCGGTTCTACAAACTTTTAGTCTCAAAGTTCGTTTAGATAGACGTAATAATGCAGTGGATATTGGTTGCTTGATTGGAATTGCAATGACTCGCAATGTGCGTAAATTGGTACTCGAAGTTTACTTTCACAGAGGGACATTCACATTTCCTAGGAGCTTGTACCACTGTGAAACACTAGAGACTTTGGAACTCATCCTTAATGTTGTTATGGATGTCCCTCCTTCGGTTTATCTGAAATCCCTTAAAACCCTTTATCTTCTAGCTGTGGACTTCAAAGACGATGAATCAGTTATTAACCTTTTATCTGGCTGTCCTAATCTTCAAGATTTGGTAATGCGTAGAAATTCAAGTAGTAATGTGAAAACTTTCACTATTGCAGTGCCATCTTTACAAAGACTAGCCATTCATAATGGCAGTGGTACACCACAACATTGTGGATATACCATAAATACTCCTTCTTTGAAATACTTGAAACTTGAAGGGTCTAAGGCTTTTGAGTCTTTTATGGTTGAGAACGTATCGGAGCTGATAGAGGTAAATATTACTGATGTCTCTGAGATAATCGACGAGAAGCTTCGGGTATTTCTTACTTCAGTTACACGTCTTTCCTTGGCTTTATCACCATCGGTGTTTACGTTTCCTACCGGTATCATCTTCAACCAGTTAGTATATTTGGAGATATGTACAAATAAAACATCATGGTGGAAACTACTTCCCCTCATGCTCCATAGTTCTCCTAAACTCCAAGTCCTCAAGCTCATCGATGACACAGATGGGATGAACTATGTTGAGGCTAGTGGAGAATGGAATCAACCAAAAAATGTTCCTGAATGTTTGCACCATCTTGAGAAATTCATTTGGGAAGGCTACAAATGGAAACGTGAAGAGATAGAAGTGGCGAAATACATTCTAAAGAACACGAATCGTTTGAAGAGAGCTATTTTCTCCCTAAAAGGTATTAGTTCTGAAGATAGGCTTGTGGTGGTTGAAGATTTGAAAAGTGTTGTCATGGCTACAACAAATTCATGCCAGTTTCAATTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD LRR_2

Protein Analysis

422

Amino Acids

48.14

Weight (kDa)

8.64

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 21 - 60 5.1e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 81 - 409 2e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 113 - 223 8.8e-10 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 164 - 189 3.7e-08 Leucine Rich Repeat
FBD PF08387 355 - 399 2e-16 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 67
AcsI RAATTY 3 cut(s) 565, 1073, 1243
AcuI CTGAAG 2 cut(s) 798, 1209
AfaI GTAC 4 cut(s) 333, 383, 643, 907
AfiI CCNNNNNNNGG 2 cut(s) 67, 445
AflIII ACRYGT 1 cut(s) 821
AgeI ACCGGT 1 cut(s) 866
AjiI CACGTC 1 cut(s) 824
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 6 cut(s) 378, 485, 748, 796, 979, 1160
AluI AGCT 6 cut(s) 378, 485, 748, 796, 979, 1160
Alw26I GTCTC 4 cut(s) 132, 248, 395, 778
Ama87I CYCGRG 1 cut(s) 152
ApoI RAATTY 3 cut(s) 565, 1073, 1243
ArsI GACNNNNNNTTYG 2 cut(s) 226, 258
AsiGI ACCGGT 1 cut(s) 866
Asp700I GAANNNNTTC 1 cut(s) 587
AspA2I CCTAGG 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 834
AvaI CYCGRG 1 cut(s) 152
AvrII CCTAGG 1 cut(s) 371
BanII GRGCYC 1 cut(s) 74
BauI CACGAG 1 cut(s) 100
BccI CCATC 4 cut(s) 613, 853, 989, 1071
BciT130I CCWGG 1 cut(s) 185
BcoDI GTCTC 4 cut(s) 132, 248, 395, 778
BfaI CTAG 5 cut(s) 372, 398, 482, 620, 1017
BlnI CCTAGG 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 824
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 132
BpmI CTGGAG 2 cut(s) 44, 206
BpuEI CTTGAG 2 cut(s) 959, 1088
Bsa29I ATCGAT 1 cut(s) 984
BsaJI CCNNGG 2 cut(s) 371, 831
BsaWI WCCGGW 2 cut(s) 223, 866
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 445
Bse118I RCCGGY 1 cut(s) 866
Bse1I ACTGG 2 cut(s) 883, 1252
Bse3DI GCAATG 2 cut(s) 312, 322
BseBI CCWGG 1 cut(s) 185
BseCI ATCGAT 1 cut(s) 984
BseDI CCNNGG 2 cut(s) 371, 831
BseGI GGATG 3 cut(s) 414, 439, 1005
BseLI CCNNNNNNNGG 2 cut(s) 67, 445
BseMI GCAATG 2 cut(s) 312, 322
BseMII CTCAG 1 cut(s) 768
BseNI ACTGG 2 cut(s) 883, 1252
BshTI ACCGGT 1 cut(s) 866
BshVI ATCGAT 1 cut(s) 984
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 224, 867
BslFI GGGAC 2 cut(s) 370, 422
BslI CCNNNNNNNGG 2 cut(s) 67, 445
BsmAI GTCTC 4 cut(s) 132, 248, 395, 778
BsmFI GGGAC 2 cut(s) 370, 422
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 74
Bsp1407I TGTACA 1 cut(s) 905
BspCNI CTCAG 1 cut(s) 769
BspDI ATCGAT 1 cut(s) 984
BspLI GGNNCC 1 cut(s) 222
BsrDI GCAATG 2 cut(s) 312, 322
BsrFI RCCGGY 1 cut(s) 866
BsrGI TGTACA 1 cut(s) 905
BsrI ACTGG 2 cut(s) 883, 1252
BssAI RCCGGY 1 cut(s) 866
BssECI CCNNGG 2 cut(s) 371, 831
BssSI CACGAG 1 cut(s) 100
BssT1I CCWWGG 2 cut(s) 371, 831
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 2 cut(s) 1101, 1148
BstAUI TGTACA 1 cut(s) 905
BstDEI CTNAG 2 cut(s) 708, 777
BstF5I GGATG 3 cut(s) 414, 439, 1005
BstMAI GTCTC 4 cut(s) 132, 248, 395, 778
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
Bsu15I ATCGAT 1 cut(s) 984
BsuTUI ATCGAT 1 cut(s) 984
BtrI CACGTC 1 cut(s) 824
BtsCI GGATG 3 cut(s) 414, 439, 1005
BtsI GCAGTG 3 cut(s) 282, 606, 643
BtsIMutI CAGTG 4 cut(s) 282, 385, 606, 643
Cfr10I RCCGGY 1 cut(s) 866
ClaI ATCGAT 1 cut(s) 984
Csp6I GTAC 4 cut(s) 332, 382, 642, 906
CspAI ACCGGT 1 cut(s) 866
CviAII CATG 5 cut(s) 28, 921, 943, 1231, 1248
CviQI GTAC 4 cut(s) 332, 382, 642, 906
DdeI CTNAG 2 cut(s) 708, 777
Eam1104I CTCTTC 2 cut(s) 1101, 1148
EarI CTCTTC 2 cut(s) 1101, 1148
Eco130I CCWWGG 2 cut(s) 371, 831
Eco24I GRGCYC 1 cut(s) 74
Eco57I CTGAAG 2 cut(s) 798, 1209
Eco88I CYCGRG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 371, 831
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 2 cut(s) 371, 831
FaeI CATG 5 cut(s) 31, 924, 946, 1234, 1251
FalI AAGNNNNNCTT 2 cut(s) 1182, 1214
FaqI GGGAC 2 cut(s) 370, 422
FatI CATG 5 cut(s) 27, 920, 942, 1230, 1247
FauNDI CATATG 1 cut(s) 1265
FokI GGATG 3 cut(s) 401, 446, 1012
FriOI GRGCYC 1 cut(s) 74
FspBI CTAG 5 cut(s) 372, 398, 482, 620, 1017
GsuI CTGGAG 2 cut(s) 44, 206
HapII CCGG 2 cut(s) 224, 867
Hin1II CATG 5 cut(s) 31, 924, 946, 1234, 1251
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 7 cut(s) 55, 161, 310, 506, 719, 1030, 1144
HpaII CCGG 2 cut(s) 224, 867
HphI GGTGA 1 cut(s) 834
Hpy166II GTNNAC 4 cut(s) 343, 490, 644, 855
Hpy188I TCNGA 4 cut(s) 456, 745, 778, 1189
Hpy188III TCNNGA 4 cut(s) 61, 545, 1049, 1067
Hpy8I GTNNAC 4 cut(s) 343, 490, 644, 855
Hpy99I CGWCG 1 cut(s) 791
HpyAV CCTTC 5 cut(s) 179, 453, 687, 695, 1079
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 5 cut(s) 265, 738, 823, 857, 1102
HpyCH4V TGCA 4 cut(s) 275, 305, 599, 1060
HpyF3I CTNAG 2 cut(s) 708, 777
HpySE526I ACGT 5 cut(s) 265, 738, 823, 857, 1102
Hsp92II CATG 5 cut(s) 31, 924, 946, 1234, 1251
LmnI GCTCC 4 cut(s) 226, 375, 745, 951
LweI GCATC 1 cut(s) 132
MaeI CTAG 5 cut(s) 372, 398, 482, 620, 1017
MaeII ACGT 5 cut(s) 265, 738, 823, 857, 1102
MaeIII GTNAC 4 cut(s) 19, 39, 193, 817
MboII GAAGA 7 cut(s) 470, 533, 868, 1118, 1165, 1202, 1223
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 6 cut(s) 300, 326, 565, 1073, 1243, 1259
MlyI GAGTC 2 cut(s) 304, 728
MnlI CCTC 7 cut(s) 5, 347, 450, 748, 950, 983, 1006
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 3 cut(s) 420, 465, 516
MslI CAYNNNNRTG 1 cut(s) 922
MspI CCGG 2 cut(s) 224, 867
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
NdeI CATATG 1 cut(s) 1265
NlaIII CATG 5 cut(s) 31, 924, 946, 1234, 1251
NlaIV GGNNCC 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 152
PcsI WCGNNNNNNNCGW 2 cut(s) 319, 854
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 5 cut(s) 55, 161, 506, 1030, 1144
PflMI CCANNNNNTGG 1 cut(s) 67
PinAI ACCGGT 1 cut(s) 866
PleI GAGTC 2 cut(s) 304, 727
PpsI GAGTC 2 cut(s) 304, 727
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 222
PspXI VCTCGAGB 1 cut(s) 152
RsaI GTAC 4 cut(s) 333, 383, 643, 907
RsaNI GTAC 4 cut(s) 332, 382, 642, 906
RseI CAYNNNNRTG 1 cut(s) 922
SaqAI TTAA 3 cut(s) 420, 465, 516
SchI GAGTC 2 cut(s) 304, 728
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 1 cut(s) 132
Sfr274I CTCGAG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 922
SmlI CTYRAG 3 cut(s) 152, 974, 1067
SmoI CTYRAG 3 cut(s) 152, 974, 1067
Sse9I AATT 6 cut(s) 300, 326, 565, 1073, 1243, 1259
SspI AATATT 1 cut(s) 763
SspMI CTAG 5 cut(s) 372, 398, 482, 620, 1017
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 2 cut(s) 371, 831
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 5 cut(s) 268, 741, 826, 860, 1105
TaqI TCGA 5 cut(s) 10, 153, 336, 786, 984
TasI AATT 6 cut(s) 300, 326, 565, 1073, 1243, 1259
TatI WGTACW 1 cut(s) 905
TfiI GAWTC 5 cut(s) 55, 161, 506, 1030, 1144
Tru1I TTAA 3 cut(s) 420, 465, 516
Tru9I TTAA 3 cut(s) 420, 465, 516
TscAI CASTG 4 cut(s) 282, 392, 606, 643
TspDTI ATGAA 7 cut(s) 17, 519, 617, 1016, 1066, 1236, 1252
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 4 cut(s) 282, 392, 606, 643
Van91I CCANNNNNTGG 1 cut(s) 67
XapI RAATTY 3 cut(s) 565, 1073, 1243
XhoI CTCGAG 1 cut(s) 152
XmaJI CCTAGG 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 5 cut(s) 372, 398, 482, 620, 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.