AT5G60610

domain in FBox and BRCT domain containing plant proteins

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
24363591 .. 24365615
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60610.1

Sequence Viewer

Length: 1167 bp
ATGGACAGAATCAGTGGGTTGCCTGATGAATTGTTGGTCAAGATTATATCGTTTGTTCCGACAAAAGTAGCTGTATCCACTAGCATTTTGTCCAAACGATGGGAGTCTCTTTGGAAGTGGGTGCCTAAACTTGAGTGCGATTGTACTGAGCCTGCACTTCGGGATTTTATTCTCAAGAATCTGCCGTTACAAGCTCGGATCATAGAAAGCTTGTACCTCAGATTTCGTCGTGAGTCATTTCTGTTTCAGGATATCAAACTCTGGGGTGGAATTGCAATTTCTCACTGCTTGCGTGAGCTACGTATCGACTTTTTTTCTCACTATGCCAATCCATATGTTATATTGCCCAGAAGCTTGTATACCTGCAAATCTCTGGTGACCTTGAAACTCCTAGGCTTGGGTATTCGTGTGGATGTTCCTCGAGATGTTTGTCTCCCTTCTTTAAAAACTTTGCTACTTCAATGTGTGGCATACTCAGAAGAAGATCCTCTTCGACTGCTTCTTTCCTGTTGCCCTGTTCTTGAAGATCTGGTTATTGAACTAGATGATGCAAACCAAAATGTGAAAGCGCTAGTTGTTATTGTCCCAACTTTGCAGTGTCTATCCTTGAAGATACCTGCTTCATGTTCTGATGAACGGTATTTGATTGTTACCCCTTCTTTGAAGTATTTCAAAGTTGAGGATGACAGAGAAATTTTCAATGCTTTGATTGAGAATATGCCAGAGCTGGAAGAAGCGGATATCTATGTTACGCAACATATTGAGACGCTTCTCGAATCAGTTACATCTGTCAAACGACTTACACTACGCCAATTGTACAACAGCATAGATGAGTATAAGTGTCGTGCTGGTATTGTCTTCAAACAGCTTGAACAACTGGAGCTATCCATATGCAGTGATAATTGGACAAAGTTAGTTATATGGTTGCTCCAAAATTCTCCCAATCTGCGAGTTCTCAATCTTGACGCTGATAGTGATTATGAACGTTATGAGGAGTATGAACAGGATAACTGGAAGAATATACAAAGATCTGTTCCTAAATGTTTGAAGAGCAGTCTCAAAACTTTGGAGTTTGCAGGGTACACGGCAAGGCCAGAAGAGAGGGATTTCTTGAGTTTTATCTTCAAAAAAGCTCGTTGCTTGAAGACTTCATCAATCTCGCATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

44.95

Weight (kDa)

5.8

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 43 6.5e-08 F-box domain
LRR_At5g56370 PF24758 94 - 223 1.9e-13 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 147 - 172 2.6e-06 Leucine Rich Repeat
FBD PF08387 343 - 386 6.3e-16 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 371, 625
AccB1I GGYRCC 1 cut(s) 121
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 1 cut(s) 359
AciI CCGC 1 cut(s) 737
AclI AACGTT 1 cut(s) 985
AclWI GGATC 2 cut(s) 206, 479
AcsI RAATTY 2 cut(s) 693, 934
AfaI GTAC 4 cut(s) 145, 215, 818, 1082
AfeI AGCGCT 1 cut(s) 570
AfiI CCNNNNNNNGG 2 cut(s) 99, 397
AluBI AGCT 9 cut(s) 71, 194, 210, 298, 354, 727, 868, 883, 1133
AluI AGCT 9 cut(s) 71, 194, 210, 298, 354, 727, 868, 883, 1133
Alw26I GTCTC 4 cut(s) 111, 437, 758, 1061
AlwI GGATC 2 cut(s) 206, 479
Ama87I CYCGRG 1 cut(s) 420
Aor51HI AGCGCT 1 cut(s) 570
AoxI GGCC 1 cut(s) 1091
ApoI RAATTY 2 cut(s) 693, 934
Asp700I GAANNNNTTC 1 cut(s) 668
AspA2I CCTAGG 1 cut(s) 391
AspLEI GCGC 1 cut(s) 571
AsuHPI GGTGA 1 cut(s) 388
AvaI CYCGRG 1 cut(s) 420
AvrII CCTAGG 1 cut(s) 391
BanI GGYRCC 1 cut(s) 121
BarI GAAGNNNNNNTAC 2 cut(s) 343, 375
BbsI GAAGAC 2 cut(s) 850, 1151
BccI CCATC 1 cut(s) 93
BceAI ACGGC 2 cut(s) 169, 1101
BciVI GTATCC 1 cut(s) 85
BcoDI GTCTC 4 cut(s) 111, 437, 758, 1061
BfaI CTAG 4 cut(s) 81, 392, 542, 572
BfoI RGCGCY 1 cut(s) 572
BfuAI ACCTGC 2 cut(s) 371, 625
BfuI GTATCC 1 cut(s) 85
BglII AGATCT 2 cut(s) 526, 1028
BlnI CCTAGG 1 cut(s) 391
BmeT110I CYCGRG 1 cut(s) 420
BmiI GGNNCC 1 cut(s) 123
BmsI GCATC 1 cut(s) 538
BpiI GAAGAC 2 cut(s) 850, 1151
BpmI CTGGAG 1 cut(s) 899
BpuEI CTTGAG 3 cut(s) 152, 158, 1132
BsaAI YACGTR 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 397
Bse1I ACTGG 2 cut(s) 882, 1016
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 2 cut(s) 418, 688
BseLI CCNNNNNNNGG 2 cut(s) 99, 397
BseMII CTCAG 3 cut(s) 138, 232, 489
BseNI ACTGG 2 cut(s) 882, 1016
BseRI GAGGAG 1 cut(s) 1007
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 1093
BshNI GGYRCC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 420
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 2 cut(s) 99, 397
BsmAI GTCTC 4 cut(s) 111, 437, 758, 1061
BsmBI CGTCTC 1 cut(s) 758
BsmFI GGGAC 1 cut(s) 569
BsnI GGCC 1 cut(s) 1093
BsoBI CYCGRG 1 cut(s) 420
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 4 cut(s) 198, 484, 526, 1028
BspACI CCGC 1 cut(s) 737
BspANI GGCC 1 cut(s) 1093
BspCNI CTCAG 3 cut(s) 139, 231, 488
BspLI GGNNCC 1 cut(s) 123
BspMI ACCTGC 2 cut(s) 371, 625
BspPI GGATC 2 cut(s) 206, 479
BspQI GCTCTTC 1 cut(s) 1043
BspT107I GGYRCC 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 816
BsrI ACTGG 2 cut(s) 882, 1016
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 4 cut(s) 198, 484, 526, 1028
BssNAI GTATAC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 391
Bst1107I GTATAC 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 639
Bst6I CTCTTC 3 cut(s) 495, 1043, 1092
BstAUI TGTACA 1 cut(s) 816
BstBAI YACGTR 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 153, 290
BstDEI CTNAG 3 cut(s) 147, 218, 475
BstEII GGTNACC 1 cut(s) 376
BstF5I GGATG 2 cut(s) 418, 688
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 4 cut(s) 201, 487, 529, 1031
BstMAI GTCTC 4 cut(s) 111, 437, 758, 1061
BstMBI GATC 4 cut(s) 198, 484, 526, 1028
BstPI GGTNACC 1 cut(s) 376
BstSNI TACGTA 1 cut(s) 302
BstV2I GAAGAC 2 cut(s) 850, 1151
BstX2I RGATCY 3 cut(s) 484, 526, 1028
BstYI RGATCY 3 cut(s) 484, 526, 1028
BstZ17I GTATAC 1 cut(s) 360
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 1093
BtsCI GGATG 2 cut(s) 418, 688
BtsI GCAGTG 3 cut(s) 283, 602, 901
BtsIMutI CAGTG 4 cut(s) 19, 283, 602, 901
BveI ACCTGC 2 cut(s) 371, 625
Cac8I GCNNGC 2 cut(s) 153, 290
CfoI GCGC 1 cut(s) 571
CseI GACGC 2 cut(s) 775, 974
Csp6I GTAC 4 cut(s) 144, 214, 817, 1081
CviAII CATG 1 cut(s) 624
CviQI GTAC 4 cut(s) 144, 214, 817, 1081
DdeI CTNAG 3 cut(s) 147, 218, 475
DpnI GATC 4 cut(s) 200, 486, 528, 1030
DpnII GATC 4 cut(s) 198, 484, 526, 1028
DraI TTTAAA 1 cut(s) 444
Eam1104I CTCTTC 3 cut(s) 495, 1043, 1092
EarI CTCTTC 3 cut(s) 495, 1043, 1092
Eco105I TACGTA 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 391
Eco32I GATATC 2 cut(s) 253, 742
Eco47III AGCGCT 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 420
Eco91I GGTNACC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 376
EcoRV GATATC 2 cut(s) 253, 742
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 758
FaeI CATG 1 cut(s) 627
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 1 cut(s) 569
FatI CATG 1 cut(s) 623
FauNDI CATATG 2 cut(s) 334, 890
FblI GTMKAC 1 cut(s) 359
FokI GGATG 2 cut(s) 425, 695
FspBI CTAG 4 cut(s) 81, 392, 542, 572
GlaI GCGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 899
HaeII RGCGCY 1 cut(s) 572
HaeIII GGCC 1 cut(s) 1093
HgaI GACGC 2 cut(s) 775, 974
HhaI GCGC 1 cut(s) 571
Hin1II CATG 1 cut(s) 627
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HindIII AAGCTT 2 cut(s) 208, 352
HinfI GANTC 5 cut(s) 9, 104, 178, 233, 776
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 2 cut(s) 360, 1083
Hpy188I TCNGA 5 cut(s) 60, 198, 221, 478, 631
Hpy8I GTNNAC 2 cut(s) 360, 1083
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 2 cut(s) 447, 666
HpyCH4III ACNGT 1 cut(s) 639
HpyCH4IV ACGT 2 cut(s) 301, 985
HpyCH4V TGCA 7 cut(s) 155, 275, 366, 551, 595, 894, 1076
HpyF3I CTNAG 3 cut(s) 147, 218, 475
HpySE526I ACGT 2 cut(s) 301, 985
Hsp92II CATG 1 cut(s) 627
HspAI GCGC 1 cut(s) 569
Kzo9I GATC 4 cut(s) 198, 484, 526, 1028
LguI GCTCTTC 1 cut(s) 1043
LmnI GCTCC 2 cut(s) 880, 933
LweI GCATC 1 cut(s) 538
MaeI CTAG 4 cut(s) 81, 392, 542, 572
MaeII ACGT 2 cut(s) 301, 985
MaeIII GTNAC 5 cut(s) 186, 376, 649, 748, 781
MalI GATC 4 cut(s) 200, 486, 528, 1030
MboI GATC 4 cut(s) 198, 484, 526, 1028
MfeI CAATTG 1 cut(s) 812
MflI RGATCY 3 cut(s) 484, 526, 1028
MluCI AATT 7 cut(s) 29, 270, 276, 693, 812, 901, 934
MlyI GAGTC 2 cut(s) 113, 242
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 6 cut(s) 227, 429, 498, 673, 985, 1095
MroXI GAANNNNTTC 1 cut(s) 668
MseI TTAA 1 cut(s) 443
MunI CAATTG 1 cut(s) 812
NdeI CATATG 2 cut(s) 334, 890
NdeII GATC 4 cut(s) 198, 484, 526, 1028
NlaIII CATG 1 cut(s) 627
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 376
PaeR7I CTCGAG 1 cut(s) 420
PciSI GCTCTTC 1 cut(s) 1043
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 3 cut(s) 9, 178, 776
PflMI CCANNNNNTGG 1 cut(s) 99
PleI GAGTC 2 cut(s) 112, 241
PpsI GAGTC 2 cut(s) 112, 241
Ppu21I YACGTR 1 cut(s) 302
Psp1406I AACGTT 1 cut(s) 985
PspEI GGTNACC 1 cut(s) 376
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 3 cut(s) 484, 526, 1028
RsaI GTAC 4 cut(s) 145, 215, 818, 1082
RsaNI GTAC 4 cut(s) 144, 214, 817, 1081
SapI GCTCTTC 1 cut(s) 1043
SaqAI TTAA 1 cut(s) 443
Sau3AI GATC 4 cut(s) 198, 484, 526, 1028
SchI GAGTC 2 cut(s) 113, 242
SfaNI GCATC 1 cut(s) 538
Sfr274I CTCGAG 1 cut(s) 420
SlaI CTCGAG 1 cut(s) 420
SmlI CTYRAG 4 cut(s) 131, 173, 420, 1111
SmoI CTYRAG 4 cut(s) 131, 173, 420, 1111
SnaBI TACGTA 1 cut(s) 302
Sse9I AATT 7 cut(s) 29, 270, 276, 693, 812, 901, 934
SsiI CCGC 1 cut(s) 737
SspMI CTAG 4 cut(s) 81, 392, 542, 572
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 639
TaiI ACGT 2 cut(s) 304, 988
TaqI TCGA 4 cut(s) 306, 421, 493, 774
TasI AATT 7 cut(s) 29, 270, 276, 693, 812, 901, 934
TatI WGTACW 2 cut(s) 143, 816
TfiI GAWTC 3 cut(s) 9, 178, 776
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TscAI CASTG 4 cut(s) 19, 290, 602, 901
TseFI GTSAC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 6 cut(s) 42, 612, 648, 996, 1014, 1140
TspRI CASTG 4 cut(s) 19, 290, 602, 901
Van91I CCANNNNNTGG 1 cut(s) 99
XapI RAATTY 2 cut(s) 693, 934
XhoI CTCGAG 1 cut(s) 420
XmaJI CCTAGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 4 cut(s) 81, 392, 542, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.