AT1G51055

FBD-associated F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000140
Physical Location & Seq
Reverse (-)
18925212 .. 18926315
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51055.1

Sequence Viewer

Length: 486 bp
ATGAATCTTTGTGGTGATTCTGAGATTTTAAAAGAGGATGATAACACAAAGAATTTTGCTCGTAAGAATCCGGATCCGTATCCTCCTACTGGGACTTCCTTAGTCTATCTTGACCATCTGGAGCTATGTTTATGTTCTACGGAGTGGTGGAACTTACTTACCTGTATACTCGATGATGCTCCAAAACTTCGAGTTCTCAAGCTCAAATTGTATCGAAAACATTGTGTCGAGTACAACGAGTCGATGGAACCATGGAAGCAACCAGATTATGTTCCCATATGTTTATCATCATATCTTGAGATATTTGAGTGGAGGCAATACAATGGTGAAGAGCAAGAGAGAGAAGTTGCAAAGTACATTCTAGAAAACGCGAGTCGTCTAAAGAAGGCGATATTCTACTTAGAATCTGCAGAAAAGCATGGGATATTGAAGGAGTTAGAATGTATGGCCAGAGGTTCAAAGAAATGCCAGCTTGTGTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

161

Amino Acids

18.98

Weight (kDa)

5.35

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 87 - 132 3e-20 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 166
AccII CGCG 1 cut(s) 371
AccIII TCCGGA 1 cut(s) 70
AclWI GGATC 2 cut(s) 68, 81
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 2 cut(s) 233, 356
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 430, 459
AluBI AGCT 3 cut(s) 124, 202, 472
AluI AGCT 3 cut(s) 124, 202, 472
AlwI GGATC 2 cut(s) 68, 81
Aor13HI TCCGGA 1 cut(s) 70
AoxI GGCC 1 cut(s) 447
ApoI RAATTY 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 26, 338
BalI TGGCCA 1 cut(s) 449
BamHI GGATCC 1 cut(s) 73
BccI CCATC 2 cut(s) 123, 238
BciVI GTATCC 1 cut(s) 90
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 75, 249
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 140
BpuEI CTTGAG 2 cut(s) 182, 317
BsaBI GATNNNNATC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 251
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 78
BseAI TCCGGA 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 43
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 1 cut(s) 449
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 1 cut(s) 449
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 251
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 1 cut(s) 13
BspEI TCCGGA 1 cut(s) 70
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 75, 249
BspMAI CTGCAG 1 cut(s) 412
BspPI GGATC 2 cut(s) 68, 81
BspQI GCTCTTC 1 cut(s) 324
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 1 cut(s) 73
BssNAI GTATAC 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 251
Bst1107I GTATAC 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 470
BstDEI CTNAG 3 cut(s) 21, 100, 400
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 371
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 167
BsuI GTATCC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 449
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 470
Csp6I GTAC 2 cut(s) 232, 355
CviAII CATG 2 cut(s) 252, 419
CviJI RGCY 4 cut(s) 124, 202, 449, 472
CviKI_1 RGCY 4 cut(s) 124, 202, 449, 472
CviQI GTAC 2 cut(s) 232, 355
DdeI CTNAG 3 cut(s) 21, 100, 400
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DraI TTTAAA 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 2 cut(s) 255, 422
FaqI GGGAC 1 cut(s) 106
FatI CATG 2 cut(s) 251, 418
FauNDI CATATG 1 cut(s) 278
FblI GTMKAC 1 cut(s) 166
FokI GGATG 1 cut(s) 50
FspBI CTAG 1 cut(s) 362
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 1 cut(s) 449
HapII CCGG 1 cut(s) 71
Hin1II CATG 2 cut(s) 255, 422
HinfI GANTC 6 cut(s) 4, 17, 67, 239, 373, 404
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 26, 338
Hpy166II GTNNAC 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 5 cut(s) 71, 110, 119, 296, 362
Hpy8I GTNNAC 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 379, 424
HpyCH4V TGCA 2 cut(s) 350, 410
HpyF3I CTNAG 3 cut(s) 21, 100, 400
Hsp92II CATG 2 cut(s) 255, 422
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 2 cut(s) 121, 184
LpnPI CCDG 7 cut(s) 75, 84, 104, 175, 276, 463, 482
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 362
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 341
MflI RGATCY 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 2 cut(s) 52, 206
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 2 cut(s) 248, 382
MnlI CCTC 4 cut(s) 28, 93, 306, 446
Mox20I TGGCCA 1 cut(s) 449
MroI TCCGGA 1 cut(s) 70
MscI TGGCCA 1 cut(s) 449
MseI TTAA 2 cut(s) 29, 484
Msp20I TGGCCA 1 cut(s) 449
MspI CCGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 371
NcoI CCATGG 1 cut(s) 251
NdeI CATATG 1 cut(s) 278
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 255, 422
NlaIV GGNNCC 2 cut(s) 75, 249
PciSI GCTCTTC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 4 cut(s) 4, 17, 67, 404
PleI GAGTC 2 cut(s) 247, 381
PpsI GAGTC 2 cut(s) 247, 381
PspN4I GGNNCC 2 cut(s) 75, 249
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 233, 356
RsaNI GTAC 2 cut(s) 232, 355
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 2 cut(s) 29, 484
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 2 cut(s) 248, 382
SetI ASST 5 cut(s) 126, 164, 204, 457, 474
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 408
SmlI CTYRAG 2 cut(s) 197, 296
SmoI CTYRAG 2 cut(s) 197, 296
Sse9I AATT 2 cut(s) 52, 206
SspMI CTAG 1 cut(s) 362
StyI CCWWGG 1 cut(s) 251
TaqI TCGA 5 cut(s) 171, 190, 214, 228, 242
TasI AATT 2 cut(s) 52, 206
TatI WGTACW 2 cut(s) 231, 354
TfiI GAWTC 4 cut(s) 4, 17, 67, 404
Tru1I TTAA 2 cut(s) 29, 484
Tru9I TTAA 2 cut(s) 29, 484
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 66, 155
XapI RAATTY 1 cut(s) 52
XbaI TCTAGA 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 166
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.