AT3G53550

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Forward (+)
19856870 .. 19858308
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53550.1

Sequence Viewer

Length: 771 bp
ATGGCGGTGCGAGAGCTATGTTTCATGCTCACGTGGGCTGGAGAGCCGACCAGCTTACCTAAGAGTCTTTACACATGTGAAACTCTAGTCTCTCTATGTCTTTCCGGCAAGATTCTCATTGATGTTCCTTCTTTGGCTTGTCTTCCATCCCTCAAAGAAAACGAAGGTATTGTGGGGACTTTGGTTATAGATTCACCGATTTTAAAGAAAATCTGCATTACAGATTATTCGGGAGACTCTTACTCGTTTGGGAATAAGCCTCGCCTTGATAAGGCAAAGATCAACCTTTTCTATTACCCTGATAACAAGTTTATGAGATCTCTTTCCTCAATCATGTGTCTCGAACTAATTTTGAGCGTTGCAACGCTTGCGTGGTTGAACGCTAATAACTTCTCTCGGCTTATAGAGTGTAAGCTGATTATTCTAAACGAGTTAGACTGGTTGGAATCACTAATGTCGTTCAAACAACTTGAAAAGGAGTTGCCACTTTCATGGAACCAACCGAGTTCTGTTCCCGAATGTTTGTCCAACCATCTCAAGATATTCGAGTGGAAAGGATATAGGGGAAGAAAGGAGGAGAAAGAAATCGTGCGATACATCCTTGCCAACTCTAAGTGTTTAAGGAGAATTGGAGTCTCCTTGAAATCAACCAACAACCATAAGACGATCAAAGAGTTAGAATCTATGTCTAGGGTTTCGACATCATCCCATCTTCTATTCTCCACTCAATTTGAATATATGAGCGTTGACAATGAAATAAGGAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

256

Amino Acids

29.21

Weight (kDa)

8.01

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 167 - 209 1e-21 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcvI CACGTG 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 271
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 5 cut(s) 379, 463, 473, 643, 734
AluBI AGCT 3 cut(s) 16, 54, 415
AluI AGCT 3 cut(s) 16, 54, 415
Alw26I GTCTC 4 cut(s) 94, 228, 344, 640
AsuHPI GGTGA 1 cut(s) 186
BbrPI CACGTG 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 134
BccI CCATC 3 cut(s) 154, 540, 717
BcoDI GTCTC 4 cut(s) 94, 228, 344, 640
BfaI CTAG 2 cut(s) 86, 690
BglII AGATCT 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 497
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 521
BsaAI YACGTR 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 443
BseGI GGATG 3 cut(s) 146, 597, 704
BseLI CCNNNNNNNGG 1 cut(s) 271
BseNI ACTGG 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 590
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 4 cut(s) 94, 228, 344, 640
BsmFI GGGAC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 279, 317, 666
BspACI CCGC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 497
BsrI ACTGG 1 cut(s) 443
BssMI GATC 3 cut(s) 279, 317, 666
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 60, 612
BstENI CCTNNNNNAGG 1 cut(s) 269
BstF5I GGATG 3 cut(s) 146, 597, 704
BstKTI GATC 3 cut(s) 282, 320, 669
BstMAI GTCTC 4 cut(s) 94, 228, 344, 640
BstMBI GATC 3 cut(s) 279, 317, 666
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 317
BstXI CCANNNNNNTGG 1 cut(s) 492
BstYI RGATCY 1 cut(s) 317
BtsCI GGATG 3 cut(s) 146, 597, 704
Cac8I GCNNGC 1 cut(s) 369
CspCI CAANNNNNGTGG 2 cut(s) 712, 747
CviAII CATG 4 cut(s) 25, 75, 334, 492
CviJI RGCY 8 cut(s) 16, 38, 46, 54, 137, 259, 400, 415
CviKI_1 RGCY 8 cut(s) 16, 38, 46, 54, 137, 259, 400, 415
DdeI CTNAG 2 cut(s) 60, 612
DpnI GATC 3 cut(s) 281, 319, 668
DpnII GATC 3 cut(s) 279, 317, 666
DraI TTTAAA 1 cut(s) 204
Eco72I CACGTG 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 269
FaeI CATG 4 cut(s) 28, 78, 337, 495
FaqI GGGAC 1 cut(s) 190
FatI CATG 4 cut(s) 24, 74, 333, 491
FokI GGATG 3 cut(s) 133, 584, 691
FspBI CTAG 2 cut(s) 86, 690
GsuI CTGGAG 1 cut(s) 60
HapII CCGG 1 cut(s) 105
Hin1II CATG 4 cut(s) 28, 78, 337, 495
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 7 cut(s) 64, 112, 191, 236, 446, 633, 680
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 748
Hpy188III TCNNGA 4 cut(s) 231, 341, 515, 538
Hpy8I GTNNAC 1 cut(s) 748
HpyAV CCTTC 2 cut(s) 138, 158
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 216, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 2 cut(s) 60, 612
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 4 cut(s) 28, 78, 337, 495
Kzo9I GATC 3 cut(s) 279, 317, 666
LpnPI CCDG 5 cut(s) 24, 64, 118, 312, 424
MaeI CTAG 2 cut(s) 86, 690
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 764
MalI GATC 3 cut(s) 281, 319, 668
MboI GATC 3 cut(s) 279, 317, 666
MboII GAAGA 3 cut(s) 134, 579, 704
MflI RGATCY 1 cut(s) 317
MluCI AATT 3 cut(s) 348, 627, 728
MlyI GAGTC 3 cut(s) 73, 230, 642
MmeI TCCRAC 2 cut(s) 423, 552
MnlI CCTC 4 cut(s) 161, 270, 337, 568
MseI TTAA 2 cut(s) 203, 620
MslI CAYNNNNRTG 1 cut(s) 490
MspI CCGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 3 cut(s) 279, 317, 666
NlaIII CATG 4 cut(s) 28, 78, 337, 495
NlaIV GGNNCC 1 cut(s) 497
NmeAIII GCCGAG 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 764
NspI RCATGY 1 cut(s) 78
PciI ACATGT 1 cut(s) 74
PfeI GAWTC 4 cut(s) 112, 191, 446, 680
PleI GAGTC 3 cut(s) 72, 230, 641
PmaCI CACGTG 1 cut(s) 33
PmlI CACGTG 1 cut(s) 33
PpsI GAGTC 3 cut(s) 72, 230, 641
Ppu21I YACGTR 1 cut(s) 33
PscI ACATGT 1 cut(s) 74
PspCI CACGTG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 497
PsuI RGATCY 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 490
SaqAI TTAA 2 cut(s) 203, 620
Sau3AI GATC 3 cut(s) 279, 317, 666
SchI GAGTC 3 cut(s) 73, 230, 642
SetI ASST 7 cut(s) 18, 35, 56, 61, 169, 288, 417
SmiMI CAYNNNNRTG 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 3 cut(s) 348, 627, 728
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 86, 690
TaiI ACGT 1 cut(s) 35
TaqI TCGA 3 cut(s) 342, 546, 698
TasI AATT 3 cut(s) 348, 627, 728
TfiI GAWTC 4 cut(s) 112, 191, 446, 680
Tru1I TTAA 2 cut(s) 203, 620
Tru9I TTAA 2 cut(s) 203, 620
TseFI GTSAC 1 cut(s) 764
Tsp45I GTSAC 1 cut(s) 764
TspDTI ATGAA 3 cut(s) 13, 480, 768
XagI CCTNNNNNAGG 1 cut(s) 269
XceI RCATGY 1 cut(s) 78
XspI CTAG 2 cut(s) 86, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.