Rmu_sc0000738.1_g000009

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000738.1
OG0000140
Physical Location & Seq
Reverse (-)
39658 .. 41294
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000738.1_g000009.1.cds

Sequence Viewer

Length: 1257 bp
atgttatatcagggaaaagataggactatggatgcaagttctcgaatggtacaatataaaaagcagaagttggatggagcagaagagatgataggaggcagcaagagtttaagcaatttaccggatgtgcttattgtaaaaattctctccttgcttccaaccaaagatgctatcaggacaagcattctgtctaaaagatgggaatacatatggacatcacttcccaatctcaagtttattcaatggaagtttgagaacaagagaactctcttggtgaatgctgtggaaagagcgcttattcttcgtggccctgctgatattaaagagttcagtctttcatttgaagtgttgggggatgcattacgtgttaatacatggatctctgctgtattacagcacaatgttgaagatctttctttagtcctgcacagtttcaaggacccagtttctttgcctcgttctttatttatgtctgcgacattgaaagtgctcctgctggaactgccctgtattttcaaagttccttctactatttgtttctcaagcctaaggagcttaactctttcgtccgtggtgttttctgacgattactcggtccagcagttgttttctggttgctcagttcttgaggaaatatttctatatggttgcaattgggcaaatctcaactttgtgagtatttctgctccaaagcttttgaggtttaccatagatgaaggggattcacaaattttaagaggttcagatggttgtcagattatggtacttggagttagactcgcatatttttcttacacaggtgagttcctagatgactattgcttttgtaactcatcagcaaatgaagctctgatatctcttaattctatcaagagggtccaacatgttagttaccggttgtataagcttcttaatgggctctctagtgtgaagcacctaaccatctgtgatacgtcctttgagggaattggtctgtactcagatgatgcaaaagatgatgggatgttcgagccactgcctccatgtttcttgaatagtcttgaagagattgatgtcttagaattttgtggagatgaggatgagcttcatgcaatgaaggtcttgctaaaatgtgcaatggtcttgaaaaaggtgactattaattggagcagcggtgttcaagtggaaccagaaacgatgaaggacattaacaaacagttattagatctccccagagggtcaggaaactgcaaagttgtttgtttgtgcgctcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

418

Amino Acids

46.95

Weight (kDa)

5.7

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1152
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 3 cut(s) 141, 729, 1061
AfaI GTAC 3 cut(s) 51, 765, 977
AfeI AGCGCT 1 cut(s) 294
AflIII ACRYGT 2 cut(s) 364, 883
AgeI ACCGGT 1 cut(s) 894
AluBI AGCT 5 cut(s) 555, 694, 848, 907, 1084
AluI AGCT 5 cut(s) 555, 694, 848, 907, 1084
Alw21I GWGCWC 1 cut(s) 492
AlwI GGATC 1 cut(s) 386
Aor51HI AGCGCT 1 cut(s) 294
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 2 cut(s) 99, 1149
ApoI RAATTY 3 cut(s) 141, 729, 1061
AseI ATTAAT 1 cut(s) 1140
AsiGI ACCGGT 1 cut(s) 894
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 2 cut(s) 295, 1250
AspS9I GGNCC 4 cut(s) 308, 439, 595, 877
AsuHPI GGTGA 3 cut(s) 286, 812, 1144
AvaII GGWCC 3 cut(s) 439, 595, 877
AxyI CCTNAGG 1 cut(s) 548
BanII GRGCYC 1 cut(s) 921
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 2 cut(s) 111, 1161
BccI CCATC 5 cut(s) 68, 192, 740, 950, 992
BfaI CTAG 2 cut(s) 809, 924
BfoI RGCGCY 1 cut(s) 296
BglII AGATCT 2 cut(s) 409, 1204
BisI GCNGC 2 cut(s) 100, 1150
BlsI GCNGC 2 cut(s) 101, 1151
Bme18I GGWCC 3 cut(s) 439, 595, 877
BmgT120I GGNCC 4 cut(s) 308, 439, 595, 877
BmiI GGNNCC 3 cut(s) 441, 878, 1167
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 4 cut(s) 22, 157, 346, 976
BmuI ACTGGG 1 cut(s) 437
BplI GAGNNNNNCTC 4 cut(s) 544, 576, 762, 794
BpuEI CTTGAG 3 cut(s) 215, 526, 647
BsaAI YACGTR 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 570
BsaWI WCCGGW 2 cut(s) 121, 894
BsaXI ACNNNNNCTCC 2 cut(s) 1138, 1168
Bse118I RCCGGY 1 cut(s) 894
Bse1I ACTGG 1 cut(s) 443
Bse21I CCTNAGG 1 cut(s) 548
Bse3DI GCAATG 2 cut(s) 1098, 1122
BseDI CCNNGG 1 cut(s) 570
BseGI GGATG 6 cut(s) 37, 79, 130, 361, 1008, 1084
BseMI GCAATG 2 cut(s) 1098, 1122
BseMII CTCAG 2 cut(s) 633, 993
BseNI ACTGG 1 cut(s) 443
BseXI GCAGC 2 cut(s) 111, 1161
BsgI GTGCAG 1 cut(s) 410
BshFI GGCC 1 cut(s) 309
BshTI ACCGGT 1 cut(s) 894
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 2 cut(s) 122, 895
BsmI GAATGC 2 cut(s) 183, 283
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 2 cut(s) 492, 921
Bsp143I GATC 3 cut(s) 378, 409, 1204
BspACI CCGC 1 cut(s) 1152
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 2 cut(s) 632, 992
BspLI GGNNCC 3 cut(s) 441, 878, 1167
BspPI GGATC 1 cut(s) 386
BsrDI GCAATG 2 cut(s) 1098, 1122
BsrFI RCCGGY 1 cut(s) 894
BsrI ACTGG 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 894
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 3 cut(s) 378, 409, 1204
Bst4CI ACNGT 2 cut(s) 431, 1197
Bst6I CTCTTC 2 cut(s) 78, 1038
BstBAI YACGTR 1 cut(s) 365
BstDEI CTNAG 4 cut(s) 548, 619, 979, 1057
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 6 cut(s) 37, 79, 130, 361, 1008, 1084
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 2 cut(s) 295, 1250
BstKTI GATC 3 cut(s) 381, 412, 1207
BstMBI GATC 3 cut(s) 378, 409, 1204
BstMWI GCNNNNNNNGC 3 cut(s) 502, 552, 845
BstNSI RCATGY 1 cut(s) 887
BstV1I GCAGC 2 cut(s) 111, 1161
BstX2I RGATCY 3 cut(s) 378, 409, 1204
BstYI RGATCY 3 cut(s) 378, 409, 1204
Bsu36I CCTNAGG 1 cut(s) 548
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 6 cut(s) 37, 79, 130, 361, 1008, 1084
BtsI GCAGTG 1 cut(s) 1013
BtsIMutI CAGTG 1 cut(s) 1013
CfoI GCGC 2 cut(s) 295, 1250
Cfr10I RCCGGY 1 cut(s) 894
Cfr13I GGNCC 4 cut(s) 308, 439, 595, 877
Csp6I GTAC 3 cut(s) 50, 764, 976
CspAI ACCGGT 1 cut(s) 894
CviAII CATG 4 cut(s) 375, 884, 1023, 1088
CviJI RGCY 9 cut(s) 309, 546, 555, 694, 848, 907, 919, 1012, 1084
CviKI_1 RGCY 9 cut(s) 309, 546, 555, 694, 848, 907, 919, 1012, 1084
CviQI GTAC 3 cut(s) 50, 764, 976
DdeI CTNAG 4 cut(s) 548, 619, 979, 1057
DpnI GATC 3 cut(s) 380, 411, 1206
DpnII GATC 3 cut(s) 378, 409, 1204
Eam1104I CTCTTC 2 cut(s) 78, 1038
EarI CTCTTC 2 cut(s) 78, 1038
Eco24I GRGCYC 1 cut(s) 921
Eco32I GATATC 1 cut(s) 855
Eco47I GGWCC 3 cut(s) 439, 595, 877
Eco47III AGCGCT 1 cut(s) 294
Eco81I CCTNAGG 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 439
EcoRV GATATC 1 cut(s) 855
EcoT22I ATGCAT 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 921
FaeI CATG 4 cut(s) 378, 887, 1026, 1091
FatI CATG 4 cut(s) 374, 883, 1022, 1087
FauNDI CATATG 1 cut(s) 209
Fnu4HI GCNGC 2 cut(s) 100, 1150
FokI GGATG 6 cut(s) 44, 86, 137, 368, 1015, 1091
FriOI GRGCYC 1 cut(s) 921
Fsp4HI GCNGC 2 cut(s) 100, 1150
FspBI CTAG 2 cut(s) 809, 924
GlaI GCGC 2 cut(s) 294, 1249
GluI GCNGC 2 cut(s) 100, 1150
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 1 cut(s) 309
HapII CCGG 2 cut(s) 122, 895
HhaI GCGC 2 cut(s) 295, 1250
Hin1II CATG 4 cut(s) 378, 887, 1026, 1091
Hin6I GCGC 2 cut(s) 293, 1248
HinP1I GCGC 2 cut(s) 293, 1248
HindIII AAGCTT 2 cut(s) 692, 905
HinfI GANTC 2 cut(s) 722, 777
HpaII CCGG 2 cut(s) 122, 895
HphI GGTGA 3 cut(s) 286, 812, 1144
Hpy166II GTNNAC 1 cut(s) 705
Hpy188I TCNGA 5 cut(s) 583, 745, 756, 852, 982
Hpy188III TCNNGA 8 cut(s) 42, 175, 626, 871, 1030, 1040, 1123, 1221
Hpy8I GTNNAC 1 cut(s) 705
HpyAV CCTTC 4 cut(s) 534, 710, 1090, 1174
HpyCH4III ACNGT 2 cut(s) 431, 1197
HpyCH4IV ACGT 2 cut(s) 364, 953
HpyCH4V TGCA 8 cut(s) 35, 359, 427, 651, 989, 1091, 1115, 1230
HpyF10VI GCNNNNNNNGC 3 cut(s) 502, 552, 845
HpyF3I CTNAG 4 cut(s) 548, 619, 979, 1057
HpySE526I ACGT 2 cut(s) 364, 953
Hsp92II CATG 4 cut(s) 378, 887, 1026, 1091
HspAI GCGC 2 cut(s) 293, 1248
Kzo9I GATC 3 cut(s) 378, 409, 1204
LmnI GCTCC 5 cut(s) 77, 495, 552, 691, 1146
Lsp1109I GCAGC 2 cut(s) 111, 1161
LweI GCATC 4 cut(s) 22, 157, 346, 976
MaeI CTAG 2 cut(s) 809, 924
MaeII ACGT 2 cut(s) 364, 953
MaeIII GTNAC 3 cut(s) 827, 890, 1132
MalI GATC 3 cut(s) 380, 411, 1206
MboI GATC 3 cut(s) 378, 409, 1204
MboII GAAGA 4 cut(s) 95, 293, 419, 1055
MfeI CAATTG 1 cut(s) 652
MflI RGATCY 3 cut(s) 378, 409, 1204
MhlI GDGCHC 2 cut(s) 492, 921
MluCI AATT 8 cut(s) 115, 141, 652, 729, 862, 966, 1061, 1141
MlyI GAGTC 1 cut(s) 771
MmeI TCCRAC 3 cut(s) 51, 182, 904
Mph1103I ATGCAT 1 cut(s) 361
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 9 cut(s) 110, 321, 369, 557, 734, 861, 912, 1140, 1188
MspA1I CMGCKG 1 cut(s) 1152
MspI CCGG 2 cut(s) 122, 895
MunI CAATTG 1 cut(s) 652
Mva1269I GAATGC 2 cut(s) 183, 283
MwoI GCNNNNNNNGC 3 cut(s) 502, 552, 845
NdeI CATATG 1 cut(s) 209
NdeII GATC 3 cut(s) 378, 409, 1204
NlaIII CATG 4 cut(s) 378, 887, 1026, 1091
NlaIV GGNNCC 3 cut(s) 441, 878, 1167
NmuCI GTSAC 1 cut(s) 1132
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 1 cut(s) 887
PciI ACATGT 1 cut(s) 883
PctI GAATGC 2 cut(s) 183, 283
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 1 cut(s) 722
PinAI ACCGGT 1 cut(s) 894
PkrI GCNGC 2 cut(s) 101, 1151
PleI GAGTC 1 cut(s) 771
PpsI GAGTC 1 cut(s) 771
Ppu21I YACGTR 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 439
PscI ACATGT 1 cut(s) 883
PshBI ATTAAT 1 cut(s) 1140
Psp5II RGGWCCY 1 cut(s) 439
PspN4I GGNNCC 3 cut(s) 441, 878, 1167
PspPI GGNCC 4 cut(s) 308, 439, 595, 877
PspPPI RGGWCCY 1 cut(s) 439
PsuI RGATCY 3 cut(s) 378, 409, 1204
RsaI GTAC 3 cut(s) 51, 765, 977
RsaNI GTAC 3 cut(s) 50, 764, 976
SaqAI TTAA 9 cut(s) 110, 321, 369, 557, 734, 861, 912, 1140, 1188
SatI GCNGC 2 cut(s) 100, 1150
Sau3AI GATC 3 cut(s) 378, 409, 1204
Sau96I GGNCC 4 cut(s) 308, 439, 595, 877
SchI GAGTC 1 cut(s) 771
SduI GDGCHC 2 cut(s) 492, 921
SfaNI GCATC 4 cut(s) 22, 157, 346, 976
SinI GGWCC 3 cut(s) 439, 595, 877
SmlI CTYRAG 3 cut(s) 230, 541, 626
SmoI CTYRAG 3 cut(s) 230, 541, 626
Sse9I AATT 8 cut(s) 115, 141, 652, 729, 862, 966, 1061, 1141
SsiI CCGC 1 cut(s) 1152
SspI AATATT 1 cut(s) 636
SspMI CTAG 2 cut(s) 809, 924
TaaI ACNGT 2 cut(s) 431, 1197
TaiI ACGT 2 cut(s) 367, 956
TaqI TCGA 2 cut(s) 43, 1008
TaqII GACCGA 1 cut(s) 583
TasI AATT 8 cut(s) 115, 141, 652, 729, 862, 966, 1061, 1141
TatI WGTACW 1 cut(s) 975
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 9 cut(s) 110, 321, 369, 557, 734, 861, 912, 1140, 1188
Tru9I TTAA 9 cut(s) 110, 321, 369, 557, 734, 861, 912, 1140, 1188
TscAI CASTG 1 cut(s) 1020
TseFI GTSAC 1 cut(s) 1132
TseI GCWGC 2 cut(s) 99, 1149
Tsp45I GTSAC 1 cut(s) 1132
TspDTI ATGAA 6 cut(s) 327, 729, 858, 1076, 1109, 1193
TspGWI ACGGA 1 cut(s) 559
TspRI CASTG 1 cut(s) 1020
VpaK11BI GGWCC 3 cut(s) 439, 595, 877
VspI ATTAAT 1 cut(s) 1140
XapI RAATTY 3 cut(s) 141, 729, 1061
XceI RCATGY 1 cut(s) 887
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 2 cut(s) 809, 924
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.