Rroxscaffold_1G00011240

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000140
Physical Location & Seq
Reverse (-)
14232992 .. 14233489
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011240.1

Sequence Viewer

Length: 417 bp
ATGCACTCGTTCAATAATCTAACCACCTTGATATTTGAACGAGTGGAAGTAGATCTCGGTTGCAAAGGACTATTGACCTTTCTTCAAAATTGTCCTTGTCTTAAGTATCTTATATTCTGTGAGGGGATTGGTCTGTACTCAGATGATGCAAAAGATGATGGTATGTTGGAGCCACTGCCTCCATGTTTCTTGAATAGTCTTGAAGAGATTGATGTCTTGGAGTTTTGTGGAGATGAGAATGAGCTTCATGCAATGAAGGTCTTGCTAAAATGTGCAATGGTCTTGAGAAAGGTGACTATTAATTGGTGCAGTGGTGTTCAAGTGGAACCAGAAACGATGAAGGACATTAACAAACAGTTATTAGATCTCCCCAGATGGTCAGAAAACTGCAAAGTTGTTTGTTTGTGCCCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

138

Amino Acids

15.72

Weight (kDa)

4.69

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 137
AflII CTTAAG 1 cut(s) 101
AgsI TTSAA 6 cut(s) 13, 38, 86, 193, 203, 320
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
AseI ATTAAT 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 410
BccI CCATC 2 cut(s) 152, 369
BfrI CTTAAG 1 cut(s) 101
BglII AGATCT 2 cut(s) 52, 364
BmiI GGNNCC 2 cut(s) 171, 327
BmsI GCATC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 304
Bse3DI GCAATG 2 cut(s) 258, 282
BseMI GCAATG 2 cut(s) 258, 282
BseMII CTCAG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 410
BsgI GTGCAG 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 2 cut(s) 52, 364
BspCNI CTCAG 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 171, 327
BspTI CTTAAG 1 cut(s) 101
BsrDI GCAATG 2 cut(s) 258, 282
BssMI GATC 2 cut(s) 52, 364
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 139
BstKTI GATC 2 cut(s) 55, 367
BstMBI GATC 2 cut(s) 52, 364
BstSLI GKGCMC 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 52, 364
BstYI RGATCY 2 cut(s) 52, 364
BtsI GCAGTG 2 cut(s) 173, 316
BtsIMutI CAGTG 2 cut(s) 173, 316
Csp6I GTAC 1 cut(s) 136
CviAII CATG 2 cut(s) 183, 248
CviJI RGCY 2 cut(s) 172, 244
CviKI_1 RGCY 2 cut(s) 172, 244
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 139
DpnI GATC 2 cut(s) 54, 366
DpnII GATC 2 cut(s) 52, 364
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
FaeI CATG 2 cut(s) 186, 251
FaiI YATR 4 cut(s) 113, 164, 184, 249
FatI CATG 2 cut(s) 182, 247
Hin1II CATG 2 cut(s) 186, 251
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 142, 382
Hpy188III TCNNGA 3 cut(s) 190, 200, 283
HpyAV CCTTC 2 cut(s) 250, 334
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4V TGCA 7 cut(s) 4, 63, 149, 251, 275, 309, 390
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 2 cut(s) 186, 251
Kzo9I GATC 2 cut(s) 52, 364
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 2 cut(s) 342, 385
LweI GCATC 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 54, 366
MboI GATC 2 cut(s) 52, 364
MboII GAAGA 2 cut(s) 74, 215
MflI RGATCY 2 cut(s) 52, 364
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 2 cut(s) 88, 301
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 115, 189
MseI TTAA 3 cut(s) 102, 300, 348
MspCI CTTAAG 1 cut(s) 101
NdeII GATC 2 cut(s) 52, 364
NlaIII CATG 2 cut(s) 186, 251
NlaIV GGNNCC 2 cut(s) 171, 327
NmuCI GTSAC 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 171, 327
PsuI RGATCY 2 cut(s) 52, 364
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 3 cut(s) 102, 300, 348
Sau3AI GATC 2 cut(s) 52, 364
SduI GDGCHC 1 cut(s) 410
SetI ASST 5 cut(s) 29, 80, 246, 261, 294
SfaNI GCATC 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 101, 283
SmoI CTYRAG 2 cut(s) 101, 283
Sse9I AATT 2 cut(s) 88, 301
TaaI ACNGT 1 cut(s) 357
TasI AATT 2 cut(s) 88, 301
TatI WGTACW 1 cut(s) 135
Tru1I TTAA 3 cut(s) 102, 300, 348
Tru9I TTAA 3 cut(s) 102, 300, 348
TscAI CASTG 2 cut(s) 180, 316
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 236, 269, 353
TspRI CASTG 2 cut(s) 180, 316
Vha464I CTTAAG 1 cut(s) 101
VspI ATTAAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.