AT5G38580

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Reverse (-)
15451164 .. 15451842
679 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38580.1

Sequence Viewer

Length: 507 bp
ATGTATTTAATGAACATGCCTAACCTGAGGGAAGCATATGTCGATGTTGTATCCTCAGATATCTTACAATATGATGGGTTTGATGATGGTTATGTTTTCAACCAGCTTAAACATCTGAACCTATGTGTGTGCAAAGAGGAGTCGTCGAATCTCCTTGGCCAGTTACTCAAAGATTCTCCTAACTTACGAATATTAGACATCTCTGTTGTGAAAGATCATGGAACAGATGAGCGTAATGGTATGGTTTCCTGGAATCAACCGAATTTTGTTCCTGAATGCTTGTTGTCGAGTCTACAAACATTATTGTGGTCACGATACTTTGGGAGACAACAAGATAGAGATATTGCGGTTTATATCCTGAAAAACGCTTGTCACTTAAAGACAGCAACAATCTTGGCTGATACAGATGAACATGATGTTCCAAACCTTCAGATGATCAAGGAGTTGGCACTTTCTCTACGAACTTCAGTCATATGCCAACTCGTATTTGTTGAGTACTTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

168

Amino Acids

19.29

Weight (kDa)

4.84

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 86 - 131 2.3e-18 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 292
AciI CCGC 1 cut(s) 347
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 262
AcuI CTGAAG 2 cut(s) 413, 450
AfaI GTAC 1 cut(s) 497
AgsI TTSAA 2 cut(s) 100, 502
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 319
AoxI GGCC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 262
AxyI CCTNAGG 1 cut(s) 26
BalI TGGCCA 1 cut(s) 159
BccI CCATC 2 cut(s) 68, 80
BciT130I CCWGG 1 cut(s) 250
BciVI GTATCC 1 cut(s) 61
BclI TGATCA 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 319
BfuI GTATCC 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 160
Bse21I CCTNAGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 17, 69
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 152
BshFI GGCC 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 214, 435
BspACI CCGC 1 cut(s) 347
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 18, 68
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 2 cut(s) 214, 435
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 26, 55
BstKTI GATC 2 cut(s) 217, 438
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 2 cut(s) 214, 435
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 248
Bsu36I CCTNAGG 1 cut(s) 26
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 496
CviAII CATG 3 cut(s) 16, 218, 413
CviJI RGCY 3 cut(s) 106, 159, 398
CviKI_1 RGCY 3 cut(s) 106, 159, 398
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 2 cut(s) 26, 55
DpnI GATC 2 cut(s) 216, 437
DpnII GATC 2 cut(s) 214, 435
EaeI YGGCCR 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 154
Eco32I GATATC 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 413, 450
Eco81I CCTNAGG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 248
EcoRV GATATC 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 3 cut(s) 19, 221, 416
FatI CATG 3 cut(s) 15, 217, 412
FauNDI CATATG 2 cut(s) 37, 473
FbaI TGATCA 1 cut(s) 435
FblI GTMKAC 1 cut(s) 292
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 3 cut(s) 19, 221, 416
HinfI GANTC 5 cut(s) 140, 148, 173, 253, 289
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 3 cut(s) 58, 117, 432
Hpy188III TCNNGA 3 cut(s) 272, 312, 358
Hpy8I GTNNAC 1 cut(s) 293
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 437
HpyCH4V TGCA 1 cut(s) 132
HpyF3I CTNAG 2 cut(s) 26, 55
Hsp92II CATG 3 cut(s) 19, 221, 416
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 2 cut(s) 214, 435
LpnPI CCDG 7 cut(s) 38, 116, 173, 235, 262, 285, 371
MaeIII GTNAC 3 cut(s) 162, 309, 371
MalI GATC 2 cut(s) 216, 437
MboI GATC 2 cut(s) 214, 435
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 1 cut(s) 262
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 2 cut(s) 149, 298
MnlI CCTC 3 cut(s) 21, 64, 130
Mox20I TGGCCA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 159
MseI TTAA 3 cut(s) 8, 108, 377
MslI CAYNNNNRTG 1 cut(s) 304
Msp20I TGGCCA 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 250
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 1 cut(s) 250
NdeI CATATG 2 cut(s) 37, 473
NdeII GATC 2 cut(s) 214, 435
NlaIII CATG 3 cut(s) 19, 221, 416
NmuCI GTSAC 2 cut(s) 309, 371
NspI RCATGY 1 cut(s) 19
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 148, 173, 253
PfoI TCCNGGA 1 cut(s) 248
PleI GAGTC 2 cut(s) 148, 297
PpsI GAGTC 2 cut(s) 148, 297
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
RseI CAYNNNNRTG 1 cut(s) 304
SaqAI TTAA 3 cut(s) 8, 108, 377
Sau3AI GATC 2 cut(s) 214, 435
ScaI AGTACT 1 cut(s) 497
SchI GAGTC 2 cut(s) 149, 298
ScrFI CCNGG 1 cut(s) 250
SetI ASST 4 cut(s) 27, 108, 123, 429
SmiMI CAYNNNNRTG 1 cut(s) 304
Sse9I AATT 1 cut(s) 262
SsiI CCGC 1 cut(s) 347
SspI AATATT 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 154
TaqI TCGA 3 cut(s) 42, 146, 287
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 3 cut(s) 148, 173, 253
Tru1I TTAA 3 cut(s) 8, 108, 377
Tru9I TTAA 3 cut(s) 8, 108, 377
TseFI GTSAC 2 cut(s) 309, 371
Tsp45I GTSAC 2 cut(s) 309, 371
TspDTI ATGAA 2 cut(s) 26, 423
XapI RAATTY 1 cut(s) 262
XceI RCATGY 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 292
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.