pycom10g26820

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000140
Physical Location & Seq
Forward (+)
28017592 .. 28018697
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g26820.2

Sequence Viewer

Length: 888 bp
ATGTTCAGGAACTTTATATCTATCTCCATAGCCTACAGGGACGTGGTGTTTTCTGATGACTCAGCACAGCGTCTGTTTTCTGGTTGTCCGGTCCTTGAGGAATTATATCTAGAGAATTGCATTTGGTTGAATTACAAGTTTGTGAGTATTTGTTCCCCCAAGCTTTTGACATTGTTTATAAATGAAAGCGATATGATACTTCCTGAAGGTTCAGATGGTTGTCAGTTTATGATATATGAAGTTAGTCTCCAAAGCTTTTGTTACAGGGGTGAGCTCCAAAATGAGTATTGCTTTTATGATTCCTCCTCATCAAAAAACGCTGAGATCCATCTTTCTTATGATTCTAATAAGAACCTAAGACATGCTGGTTACCGGTTGTGTAAGCTCCTTAGAGGGCTCACCAGCATGGAGAGGCTAACTTTCTCCTCATATAATGCCTTTCGGCTTGTTGTAGACAATGCACCAGAACTTCTTTCCAAGATGCCCTTGTTCAATAATCTGACAACTTTTGTATTGGAAGACGTAGCATTTATTGATGACGAAGCACTATTGACGATGCTTCAGTACTTTCCTCATCTTGAAACACTGATATTTGCTGAGGGGATTGGCATGTCCCCGGAATGGGTAGAAGATGAGGGGGTGTTGGAGCCACTGCCTCCGTGTTTCTTGTCGCATCTTAAGAGGATTGAAGTCGGTGAATTTAATGGAGATCAGTATAACGAGCTTAACGCAGTAAGGATTTTGCTGAAGAATGCAAAGGTCTTGAAGAAGCTGGATATATCTTGGCCCAAGTATTTTACAGCGGGGGCAGAGCAGAAAGCGGAGATCACCAAACCGGTATTTGATTTTCCGAGAGCATCAGGAAGCTGTGAAGTTGTGCTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

296

Amino Acids

33.84

Weight (kDa)

4.85

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AccI GTMKAC 1 cut(s) 453
AciI CCGC 2 cut(s) 803, 821
AclWI GGATC 1 cut(s) 319
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 3 cut(s) 225, 545, 767
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 2 cut(s) 621, 622
AflII CTTAAG 1 cut(s) 677
AgeI ACCGGT 2 cut(s) 372, 835
AgsI TTSAA 5 cut(s) 130, 493, 581, 689, 766
AjiI CACGTC 1 cut(s) 43
AluBI AGCT 7 cut(s) 163, 255, 274, 385, 724, 772, 867
AluI AGCT 7 cut(s) 163, 255, 274, 385, 724, 772, 867
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 1 cut(s) 319
AlwNI CAGNNNCTG 1 cut(s) 73
AoxI GGCC 1 cut(s) 785
ApoI RAATTY 1 cut(s) 698
AsiGI ACCGGT 2 cut(s) 372, 835
AspS9I GGNCC 2 cut(s) 91, 786
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 4 cut(s) 281, 391, 707, 820
AvaII GGWCC 1 cut(s) 91
BanII GRGCYC 2 cut(s) 276, 399
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 597
BccI CCATC 2 cut(s) 209, 336
BcnI CCSGG 1 cut(s) 617
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 34
BfrI CTTAAG 1 cut(s) 677
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 1 cut(s) 617
Bme18I GGWCC 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 91, 786
BmiI GGNNCC 1 cut(s) 648
BmrFI CCNGG 1 cut(s) 617
BmsI GCATC 4 cut(s) 471, 546, 682, 866
BpiI GAAGAC 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 617
BsaJI CCNNGG 1 cut(s) 615
BsaWI WCCGGW 3 cut(s) 88, 372, 835
Bsc4I CCNNNNNNNGG 2 cut(s) 621, 622
Bse118I RCCGGY 2 cut(s) 372, 835
BseDI CCNNGG 1 cut(s) 615
BseLI CCNNNNNNNGG 2 cut(s) 621, 622
BseMII CTCAG 3 cut(s) 75, 312, 588
BseRI GAGGAG 2 cut(s) 295, 415
BshFI GGCC 1 cut(s) 787
BshTI ACCGGT 2 cut(s) 372, 835
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 4 cut(s) 89, 373, 617, 836
BslFI GGGAC 2 cut(s) 53, 598
BslI CCNNNNNNNGG 2 cut(s) 621, 622
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 2 cut(s) 53, 598
BsmI GAATGC 1 cut(s) 757
BsnI GGCC 1 cut(s) 787
Bsp1286I GDGCHC 2 cut(s) 276, 399
Bsp143I GATC 3 cut(s) 324, 709, 825
BspACI CCGC 2 cut(s) 803, 821
BspANI GGCC 1 cut(s) 787
BspCNI CTCAG 3 cut(s) 74, 313, 589
BspLI GGNNCC 1 cut(s) 648
BspPI GGATC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 677
BsrFI RCCGGY 2 cut(s) 372, 835
BssAI RCCGGY 2 cut(s) 372, 835
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 3 cut(s) 324, 709, 825
BstAFI CTTAAG 1 cut(s) 677
BstDEI CTNAG 5 cut(s) 61, 321, 356, 389, 597
BstEII GGTNACC 1 cut(s) 368
BstKTI GATC 3 cut(s) 327, 712, 828
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 3 cut(s) 324, 709, 825
BstNSI RCATGY 2 cut(s) 365, 613
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 615
BstSFI CTRYAG 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 525
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 1 cut(s) 787
BtrI CACGTC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 650
BtsIMutI CAGTG 2 cut(s) 584, 650
CaiI CAGNNNCTG 1 cut(s) 73
Cfr10I RCCGGY 2 cut(s) 372, 835
Cfr13I GGNCC 2 cut(s) 91, 786
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 565
CspAI ACCGGT 2 cut(s) 372, 835
CviAII CATG 3 cut(s) 362, 406, 610
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 5 cut(s) 61, 321, 356, 389, 597
DpnI GATC 3 cut(s) 326, 711, 827
DpnII GATC 3 cut(s) 324, 709, 825
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 2 cut(s) 276, 399
Eco47I GGWCC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 3 cut(s) 225, 545, 767
Eco91I GGTNACC 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 368
EcoT38I GRGCYC 2 cut(s) 276, 399
FaeI CATG 3 cut(s) 365, 409, 613
FalI AAGNNNNNCTT 3 cut(s) 470, 502, 864
FaqI GGGAC 2 cut(s) 53, 598
FatI CATG 3 cut(s) 361, 405, 609
FauI CCCGC 1 cut(s) 796
FblI GTMKAC 1 cut(s) 453
FriOI GRGCYC 2 cut(s) 276, 399
FspBI CTAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 787
HapII CCGG 4 cut(s) 89, 373, 617, 836
HgaI GACGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 365, 409, 613
HindIII AAGCTT 2 cut(s) 161, 253
HinfI GANTC 3 cut(s) 59, 299, 341
HpaII CCGG 4 cut(s) 89, 373, 617, 836
HphI GGTGA 4 cut(s) 281, 391, 707, 820
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 4 cut(s) 55, 214, 501, 852
Hpy188III TCNNGA 6 cut(s) 7, 110, 203, 578, 763, 861
Hpy8I GTNNAC 1 cut(s) 454
HpyAV CCTTC 1 cut(s) 200
HpyCH4IV ACGT 2 cut(s) 42, 522
HpyCH4V TGCA 3 cut(s) 120, 461, 755
HpyF3I CTNAG 5 cut(s) 61, 321, 356, 389, 597
HpySE526I ACGT 2 cut(s) 42, 522
Hsp92II CATG 3 cut(s) 365, 409, 613
Kzo9I GATC 3 cut(s) 324, 709, 825
LmnI GCTCC 3 cut(s) 279, 390, 646
LweI GCATC 4 cut(s) 471, 546, 682, 866
MaeI CTAG 1 cut(s) 110
MaeII ACGT 2 cut(s) 42, 522
MaeIII GTNAC 2 cut(s) 260, 368
MalI GATC 3 cut(s) 326, 711, 827
MboI GATC 3 cut(s) 324, 709, 825
MboII GAAGA 4 cut(s) 530, 641, 760, 778
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 2 cut(s) 276, 399
MluCI AATT 4 cut(s) 101, 115, 130, 698
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 624
MseI TTAA 3 cut(s) 678, 702, 726
MslI CAYNNNNRTG 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 803
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 4 cut(s) 89, 373, 617, 836
MspR9I CCNGG 1 cut(s) 617
Mva1269I GAATGC 1 cut(s) 757
NciI CCSGG 1 cut(s) 617
NdeII GATC 3 cut(s) 324, 709, 825
NlaIII CATG 3 cut(s) 365, 409, 613
NlaIV GGNNCC 1 cut(s) 648
NspI RCATGY 2 cut(s) 365, 613
PctI GAATGC 1 cut(s) 757
PfeI GAWTC 2 cut(s) 299, 341
PinAI ACCGGT 2 cut(s) 372, 835
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PsiI TTATAA 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 276
PspEI GGTNACC 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 648
PspPI GGNCC 2 cut(s) 91, 786
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 1 cut(s) 404
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 678, 702, 726
Sau3AI GATC 3 cut(s) 324, 709, 825
Sau96I GGNCC 2 cut(s) 91, 786
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 617
SduI GDGCHC 2 cut(s) 276, 399
SfaNI GCATC 4 cut(s) 471, 546, 682, 866
SfcI CTRYAG 1 cut(s) 34
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 95, 677
SmoI CTYRAG 2 cut(s) 95, 677
Sse9I AATT 4 cut(s) 101, 115, 130, 698
SsiI CCGC 2 cut(s) 803, 821
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 615
TaiI ACGT 2 cut(s) 45, 525
TasI AATT 4 cut(s) 101, 115, 130, 698
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 2 cut(s) 299, 341
Tru1I TTAA 3 cut(s) 678, 702, 726
Tru9I TTAA 3 cut(s) 678, 702, 726
TscAI CASTG 2 cut(s) 591, 657
TspDTI ATGAA 2 cut(s) 198, 252
TspGWI ACGGA 1 cut(s) 648
TspRI CASTG 2 cut(s) 591, 657
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 1 cut(s) 698
XbaI TCTAGA 1 cut(s) 109
XceI RCATGY 2 cut(s) 365, 613
XmiI GTMKAC 1 cut(s) 453
XspI CTAG 1 cut(s) 110
ZrmI AGTACT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.