Rh5DG487200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000140
Physical Location & Seq
Forward (+)
76649177 .. 76659598
10422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG487200.1

Sequence Viewer

Length: 1095 bp
ATGGATGTAAGTTCTCAGATGGAAAGACCCAAAAAGCAGAAGTTGGGTGGAGGAGAAGAGATGGTTGGACAGAGAAAGGGTTTAAGTGATTTACCTGATGTGGTTATTGCAAAAATCATCTCTTCACTTCCAACTAAAGAGGCTATCAGAACAAGCATACTGTCTAAAAGATGGGAATACCTATGGACATCAATTCCCAATCTTGAATTTTATCCAGGGAATGCTAAGAGATCTCTCTTGGTGAATGTTGTAGATAGAGCACTTCTTTTACGTGGCCCTTCTGATATAAAATGGTTCCGTCTTAGGTTTCCAGTGCTCGGTGATGCATCTCGTGTTCATGCGTGGATCTCTGCCATAGTACGGCGCAATGTTGAAGACTTATCTATAGAGCTGGATAGCCACAAGGAACCATTTTCATTGCCTCATTCTCTACTTACTTCTGCCACATTGAAAGTGCTGAACCTGTATCTCCCGTGTAGTTTCAAAGTTCCTTCTACTATTTGTTTCTCAAGTCTAAGGGAATTGTCTCTTTGCTCCGTGGTGTTTTCTGATGACTACTCAACCCAGCAGCTGTTTTCTGGTTGCCCAGTCCTTGAAAATTTATCTTTTTCGGAGTGCAATTGGGAGAATATCAAGTTTAACTTTGAGGTGGCTCTAACTGGTGCATCAGAACTTCTTGCCCAGATGCCCATGTTCAATGATCTAACCACCTTGATATTTGACGGGAGAGTGATAGAACTTGATAGTATAGTACTATTGAGGATACTCCAAAACTGTCCTTGTCTTAGGGATCTGTCATTTCATGAGGGGGTTAGGCTGTGCTCAGATGATGCAAAAGATGATGGGATGTTGGATATTCCACTGCCTCCATGTTTCTCGACCAGTCTTAAAGAGATTGGAGTCAGTGAACTTTGTGGAAACCAGAATGAGCTTCGTGCATTAAGGATTTTGCTAAAGAATGCAATTGTCTTGGAGAATATGTTTGTAAGCTACCGCGGTACCCTAGAAGGAAATACAGAGAAGAAAAGGGATCTTAACAAACAGATATCAGATCTCCCAAAAGGGTCACAAAGCTGTGAAATTGATTGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

364

Amino Acids

40.88

Weight (kDa)

5.48

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 28 - 67 1.6e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 96 - 207 3.1e-11 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 113 - 208 9.3e-14 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 998
AccB1I GGYRCC 1 cut(s) 998
AccII CGCG 1 cut(s) 996
AciI CCGC 2 cut(s) 994, 996
AclWI GGATC 3 cut(s) 353, 798, 1038
AcsI RAATTY 2 cut(s) 206, 598
AfaI GTAC 3 cut(s) 360, 753, 1000
AfiI CCNNNNNNNGG 2 cut(s) 317, 360
AgsI TTSAA 6 cut(s) 206, 374, 451, 484, 596, 697
AjnI CCWGG 1 cut(s) 214
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 5 cut(s) 391, 571, 931, 990, 1074
AluI AGCT 5 cut(s) 391, 571, 931, 990, 1074
Alw21I GWGCWC 3 cut(s) 262, 318, 824
Alw26I GTCTC 1 cut(s) 531
AlwI GGATC 3 cut(s) 353, 798, 1038
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 2 cut(s) 206, 598
Asp718I GGTACC 1 cut(s) 998
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 253, 332
BaeI ACNNNNGTAYC 2 cut(s) 982, 1015
BanI GGYRCC 1 cut(s) 998
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 3 cut(s) 262, 318, 824
BbvI GCAGC 1 cut(s) 580
BccI CCATC 4 cut(s) 13, 55, 165, 836
BceAI ACGGC 1 cut(s) 377
BciT130I CCWGG 1 cut(s) 216
BciVI GTATCC 1 cut(s) 756
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 1 cut(s) 1004
BfmI CTRYAG 1 cut(s) 384
BfuI GTATCC 1 cut(s) 756
BglII AGATCT 2 cut(s) 230, 1051
BisI GCNGC 1 cut(s) 569
BlsI GCNGC 1 cut(s) 570
BmcAI AGTACT 1 cut(s) 753
Bme1390I CCNGG 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 296, 408, 1000
BmrFI CCNGG 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 5 cut(s) 313, 335, 674, 675, 820
BmuI ACTGGG 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 493
BsaAI YACGTR 1 cut(s) 272
BsaJI CCNNGG 3 cut(s) 215, 537, 994
BsaXI ACNNNNNCTCC 2 cut(s) 965, 995
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 360
Bse1I ACTGG 4 cut(s) 311, 587, 664, 882
Bse3DI GCAATG 2 cut(s) 373, 416
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 215, 537, 994
BseGI GGATG 2 cut(s) 10, 852
BseLI CCNNNNNNNGG 2 cut(s) 317, 360
BseMI GCAATG 2 cut(s) 373, 416
BseMII CTCAG 2 cut(s) 29, 837
BseNI ACTGG 4 cut(s) 311, 587, 664, 882
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 580
BseYI CCCAGC 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 996
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 998
BsiHKAI GWGCWC 3 cut(s) 262, 318, 824
BslI CCNNNNNNNGG 2 cut(s) 317, 360
BsmAI GTCTC 1 cut(s) 531
BsmI GAATGC 2 cut(s) 226, 964
BsnI GGCC 1 cut(s) 276
Bsp1286I GDGCHC 3 cut(s) 262, 318, 824
Bsp143I GATC 6 cut(s) 230, 345, 700, 790, 1030, 1051
BspACI CCGC 2 cut(s) 994, 996
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 28, 836
BspFNI CGCG 1 cut(s) 996
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 3 cut(s) 296, 408, 1000
BspPI GGATC 3 cut(s) 353, 798, 1038
BspT107I GGYRCC 1 cut(s) 998
BsrDI GCAATG 2 cut(s) 373, 416
BsrI ACTGG 4 cut(s) 311, 587, 664, 882
BssECI CCNNGG 3 cut(s) 215, 537, 994
BssMI GATC 6 cut(s) 230, 345, 700, 790, 1030, 1051
BssSI CACGAG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 162, 776
Bst6I CTCTTC 2 cut(s) 51, 127
BstBAI YACGTR 1 cut(s) 272
BstDEI CTNAG 6 cut(s) 15, 225, 302, 515, 785, 823
BstDSI CCRYGG 2 cut(s) 537, 994
BstF5I GGATG 2 cut(s) 10, 852
BstFNI CGCG 1 cut(s) 996
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 6 cut(s) 233, 348, 703, 793, 1033, 1054
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 6 cut(s) 230, 345, 700, 790, 1030, 1051
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 1 cut(s) 996
BstV1I GCAGC 1 cut(s) 580
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 5 cut(s) 230, 345, 790, 1030, 1051
BstYI RGATCY 5 cut(s) 230, 345, 790, 1030, 1051
BsuI GTATCC 1 cut(s) 756
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 2 cut(s) 537, 994
BtsCI GGATG 2 cut(s) 10, 852
BtsI GCAGTG 1 cut(s) 860
BtsIMutI CAGTG 3 cut(s) 318, 860, 910
CaiI CAGNNNCTG 1 cut(s) 571
CciI TCATGA 1 cut(s) 802
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 275
Cfr42I CCGCGG 1 cut(s) 997
Csp6I GTAC 3 cut(s) 359, 752, 999
CviAII CATG 4 cut(s) 338, 691, 803, 870
CviQI GTAC 3 cut(s) 359, 752, 999
DdeI CTNAG 6 cut(s) 15, 225, 302, 515, 785, 823
DpnI GATC 6 cut(s) 232, 347, 702, 792, 1032, 1053
DpnII GATC 6 cut(s) 230, 345, 700, 790, 1030, 1051
Eam1104I CTCTTC 2 cut(s) 51, 127
EarI CTCTTC 2 cut(s) 51, 127
Eco32I GATATC 1 cut(s) 1047
EcoRII CCWGG 1 cut(s) 214
EcoRV GATATC 1 cut(s) 1047
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 4 cut(s) 341, 694, 806, 873
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FatI CATG 4 cut(s) 337, 690, 802, 869
Fnu4HI GCNGC 1 cut(s) 569
FokI GGATG 2 cut(s) 17, 859
Fsp4HI GCNGC 1 cut(s) 569
FspBI CTAG 1 cut(s) 1004
GlaI GCGC 1 cut(s) 365
GluI GCNGC 1 cut(s) 569
GsaI CCCAGC 1 cut(s) 568
HaeIII GGCC 1 cut(s) 276
HhaI GCGC 1 cut(s) 366
Hin1II CATG 4 cut(s) 341, 694, 806, 873
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 1 cut(s) 900
HphI GGTGA 2 cut(s) 253, 332
Hpy166II GTNNAC 1 cut(s) 908
Hpy188I TCNGA 8 cut(s) 18, 149, 283, 550, 613, 670, 826, 1051
Hpy188III TCNNGA 3 cut(s) 203, 803, 877
Hpy8I GTNNAC 1 cut(s) 908
HpyAV CCTTC 3 cut(s) 288, 501, 1001
HpyCH4III ACNGT 2 cut(s) 162, 776
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 7 cut(s) 110, 326, 618, 665, 833, 938, 962
HpyF3I CTNAG 6 cut(s) 15, 225, 302, 515, 785, 823
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 4 cut(s) 341, 694, 806, 873
HspAI GCGC 1 cut(s) 364
KpnI GGTACC 1 cut(s) 1002
KspI CCGCGG 1 cut(s) 997
Kzo9I GATC 6 cut(s) 230, 345, 700, 790, 1030, 1051
LmnI GCTCC 1 cut(s) 539
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 5 cut(s) 313, 335, 674, 675, 820
MaeI CTAG 1 cut(s) 1004
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 1065
MalI GATC 6 cut(s) 232, 347, 702, 792, 1032, 1053
MboI GATC 6 cut(s) 230, 345, 700, 790, 1030, 1051
MboII GAAGA 4 cut(s) 68, 114, 386, 1033
MfeI CAATTG 2 cut(s) 619, 963
MflI RGATCY 5 cut(s) 230, 345, 790, 1030, 1051
MhlI GDGCHC 3 cut(s) 262, 318, 824
MluCI AATT 7 cut(s) 192, 206, 521, 598, 619, 963, 1080
MlyI GAGTC 1 cut(s) 909
MmeI TCCRAC 3 cut(s) 46, 155, 831
MnlI CCTC 7 cut(s) 44, 133, 432, 640, 753, 799, 876
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 5 cut(s) 83, 639, 888, 941, 1035
MspA1I CMGCKG 2 cut(s) 571, 996
MspR9I CCNGG 1 cut(s) 216
MunI CAATTG 2 cut(s) 619, 963
Mva1269I GAATGC 2 cut(s) 226, 964
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 996
NdeII GATC 6 cut(s) 230, 345, 700, 790, 1030, 1051
NlaIII CATG 4 cut(s) 341, 694, 806, 873
NlaIV GGNNCC 3 cut(s) 296, 408, 1000
NmuCI GTSAC 1 cut(s) 1065
NsiI ATGCAT 1 cut(s) 328
PagI TCATGA 1 cut(s) 802
PctI GAATGC 2 cut(s) 226, 964
PkrI GCNGC 1 cut(s) 570
PleI GAGTC 1 cut(s) 908
PpsI GAGTC 1 cut(s) 908
Ppu21I YACGTR 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 296, 408, 1000
PspPI GGNCC 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 5 cut(s) 230, 345, 790, 1030, 1051
PvuII CAGCTG 1 cut(s) 571
RsaI GTAC 3 cut(s) 360, 753, 1000
RsaNI GTAC 3 cut(s) 359, 752, 999
SacII CCGCGG 1 cut(s) 997
SaqAI TTAA 5 cut(s) 83, 639, 888, 941, 1035
SatI GCNGC 1 cut(s) 569
Sau3AI GATC 6 cut(s) 230, 345, 700, 790, 1030, 1051
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 1 cut(s) 753
SchI GAGTC 1 cut(s) 909
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 3 cut(s) 262, 318, 824
SfaNI GCATC 5 cut(s) 313, 335, 674, 675, 820
SfcI CTRYAG 1 cut(s) 384
Sfr303I CCGCGG 1 cut(s) 997
SgrBI CCGCGG 1 cut(s) 997
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 7 cut(s) 192, 206, 521, 598, 619, 963, 1080
SsiI CCGC 2 cut(s) 994, 996
SspMI CTAG 1 cut(s) 1004
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 162, 776
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 878
TasI AATT 7 cut(s) 192, 206, 521, 598, 619, 963, 1080
TatI WGTACW 1 cut(s) 751
Tru1I TTAA 5 cut(s) 83, 639, 888, 941, 1035
Tru9I TTAA 5 cut(s) 83, 639, 888, 941, 1035
TscAI CASTG 3 cut(s) 318, 867, 910
TseFI GTSAC 1 cut(s) 1065
TseI GCWGC 1 cut(s) 568
Tsp45I GTSAC 1 cut(s) 1065
TspDTI ATGAA 3 cut(s) 326, 405, 791
TspGWI ACGGA 2 cut(s) 287, 526
TspRI CASTG 3 cut(s) 318, 867, 910
XapI RAATTY 2 cut(s) 206, 598
XspI CTAG 1 cut(s) 1004
ZrmI AGTACT 1 cut(s) 753
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.