LRR-repeat protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| F-box | PF00646 | 35 - 76 | 1.2e-08 | F-box domain |
| F-box-like | PF12937 | 35 - 69 | 4.5e-07 | F-box-like |
| LRR_At1g61320_AtMIF1 | PF23622 | 118 - 417 | 2.1e-08 | At1g61320/AtMIF1, LRR domain |
| LRR_At5g56370 | PF24758 | 126 - 263 | 1e-09 | FBD-associated F-box protein At5g56370, LRR repeats |
| LRR_2 | PF07723 | 182 - 207 | 3.7e-10 | Leucine Rich Repeat |
| FBD | PF08387 | 375 - 420 | 1.1e-18 | FBD |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 389 |
| AccIII | TCCGGA | 1 cut(s) | 1138 |
| AciI | CCGC | 3 cut(s) | 357, 397, 1214 |
| AclWI | GGATC | 1 cut(s) | 801 |
| AcsI | RAATTY | 4 cut(s) | 39, 877, 1164, 1358 |
| AcuI | CTGAAG | 1 cut(s) | 138 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 437, 728, 841 |
| AflIII | ACRYGT | 2 cut(s) | 533, 992 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 338, 1155 |
| AluBI | AGCT | 7 cut(s) | 412, 518, 615, 702, 970, 985, 1066 |
| AluI | AGCT | 7 cut(s) | 412, 518, 615, 702, 970, 985, 1066 |
| Alw26I | GTCTC | 2 cut(s) | 454, 1200 |
| AlwI | GGATC | 1 cut(s) | 801 |
| Ama87I | CYCGRG | 1 cut(s) | 1339 |
| Aor13HI | TCCGGA | 1 cut(s) | 1138 |
| ApoI | RAATTY | 4 cut(s) | 39, 877, 1164, 1358 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 594 |
| AspLEI | GCGC | 1 cut(s) | 391 |
| AspS9I | GGNCC | 2 cut(s) | 344, 394 |
| AsuC2I | CCSGG | 1 cut(s) | 583 |
| AsuHPI | GGTGA | 3 cut(s) | 551, 711, 856 |
| AsuII | TTCGAA | 1 cut(s) | 628 |
| AvaI | CYCGRG | 1 cut(s) | 1339 |
| AvaII | GGWCC | 2 cut(s) | 344, 394 |
| AxyI | CCTNAGG | 1 cut(s) | 948 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 253, 286 |
| BanII | GRGCYC | 1 cut(s) | 1340 |
| BauI | CACGAG | 1 cut(s) | 23 |
| BbsI | GAAGAC | 3 cut(s) | 663, 1256, 1320 |
| BccI | CCATC | 1 cut(s) | 189 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 152, 186 |
| BciVI | GTATCC | 1 cut(s) | 954 |
| BclI | TGATCA | 2 cut(s) | 973, 1294 |
| BcnI | CCSGG | 1 cut(s) | 583 |
| BcoDI | GTCTC | 2 cut(s) | 454, 1200 |
| BfaI | CTAG | 3 cut(s) | 456, 482, 836 |
| BfuI | GTATCC | 1 cut(s) | 954 |
| BglII | AGATCT | 1 cut(s) | 121 |
| BmcAI | AGTACT | 3 cut(s) | 779, 1100, 1237 |
| Bme1390I | CCNGG | 1 cut(s) | 583 |
| Bme18I | GGWCC | 2 cut(s) | 344, 394 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 338, 1155 |
| BmeT110I | CYCGRG | 1 cut(s) | 1339 |
| BmgT120I | GGNCC | 2 cut(s) | 344, 394 |
| BmiI | GGNNCC | 3 cut(s) | 312, 527, 1118 |
| BmrFI | CCNGG | 1 cut(s) | 583 |
| BmsI | GCATC | 2 cut(s) | 736, 1331 |
| BpiI | GAAGAC | 3 cut(s) | 663, 1256, 1320 |
| Bpu14I | TTCGAA | 1 cut(s) | 628 |
| BpuEI | CTTGAG | 2 cut(s) | 482, 1046 |
| BpuMI | CCSGG | 1 cut(s) | 583 |
| BsaBI | GATNNNNATC | 1 cut(s) | 199 |
| BsaJI | CCNNGG | 1 cut(s) | 582 |
| BsaWI | WCCGGW | 1 cut(s) | 1138 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 437, 728, 841 |
| Bse21I | CCTNAGG | 1 cut(s) | 948 |
| Bse3DI | GCAATG | 1 cut(s) | 1032 |
| Bse8I | GATNNNNATC | 1 cut(s) | 199 |
| BseAI | TCCGGA | 1 cut(s) | 1138 |
| BseDI | CCNNGG | 1 cut(s) | 582 |
| BseGI | GGATG | 1 cut(s) | 592 |
| BseJI | GATNNNNATC | 1 cut(s) | 199 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 437, 728, 841 |
| BseMI | GCAATG | 1 cut(s) | 1032 |
| BseMII | CTCAG | 5 cut(s) | 343, 864, 939, 953, 980 |
| BseRI | GAGGAG | 1 cut(s) | 11 |
| Bsh1236I | CGCG | 1 cut(s) | 389 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1339 |
| BsiSI | CCGG | 2 cut(s) | 582, 1139 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 437, 728, 841 |
| BsmAI | GTCTC | 2 cut(s) | 454, 1200 |
| BsmBI | CGTCTC | 1 cut(s) | 1200 |
| BsoBI | CYCGRG | 1 cut(s) | 1339 |
| Bsp119I | TTCGAA | 1 cut(s) | 628 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1340 |
| Bsp13I | TCCGGA | 1 cut(s) | 1138 |
| Bsp1407I | TGTACA | 1 cut(s) | 989 |
| Bsp143I | GATC | 8 cut(s) | 102, 109, 121, 433, 793, 805, 973, 1294 |
| BspACI | CCGC | 3 cut(s) | 357, 397, 1214 |
| BspCNI | CTCAG | 5 cut(s) | 342, 865, 940, 952, 979 |
| BspEI | TCCGGA | 1 cut(s) | 1138 |
| BspFNI | CGCG | 1 cut(s) | 389 |
| BspLI | GGNNCC | 3 cut(s) | 312, 527, 1118 |
| BspPI | GGATC | 1 cut(s) | 801 |
| BspT104I | TTCGAA | 1 cut(s) | 628 |
| BsrDI | GCAATG | 1 cut(s) | 1032 |
| BsrGI | TGTACA | 1 cut(s) | 989 |
| BssECI | CCNNGG | 1 cut(s) | 582 |
| BssMI | GATC | 8 cut(s) | 102, 109, 121, 433, 793, 805, 973, 1294 |
| BssSI | CACGAG | 1 cut(s) | 23 |
| Bst2BI | CACGAG | 1 cut(s) | 23 |
| Bst4CI | ACNGT | 3 cut(s) | 254, 709, 1255 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 405 |
| BstAUI | TGTACA | 1 cut(s) | 989 |
| BstBI | TTCGAA | 1 cut(s) | 628 |
| BstC8I | GCNNGC | 1 cut(s) | 410 |
| BstDEI | CTNAG | 7 cut(s) | 227, 329, 335, 873, 939, 948, 966 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 839 |
| BstF5I | GGATG | 1 cut(s) | 592 |
| BstFNI | CGCG | 1 cut(s) | 389 |
| BstHHI | GCGC | 1 cut(s) | 391 |
| BstKTI | GATC | 8 cut(s) | 105, 112, 124, 436, 796, 808, 976, 1297 |
| BstMAI | GTCTC | 2 cut(s) | 454, 1200 |
| BstMBI | GATC | 8 cut(s) | 102, 109, 121, 433, 793, 805, 973, 1294 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 405 |
| BstNSI | RCATGY | 2 cut(s) | 537, 996 |
| BstSCI | CCNGG | 1 cut(s) | 581 |
| BstUI | CGCG | 1 cut(s) | 389 |
| BstV2I | GAAGAC | 3 cut(s) | 663, 1256, 1320 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| Bsu36I | CCTNAGG | 1 cut(s) | 948 |
| BsuI | GTATCC | 1 cut(s) | 954 |
| BtsCI | GGATG | 1 cut(s) | 592 |
| BtsIMutI | CAGTG | 2 cut(s) | 112, 801 |
| Cac8I | GCNNGC | 1 cut(s) | 410 |
| CfoI | GCGC | 1 cut(s) | 391 |
| Cfr13I | GGNCC | 2 cut(s) | 344, 394 |
| CseI | GACGC | 1 cut(s) | 328 |
| CviAII | CATG | 5 cut(s) | 534, 728, 993, 1082, 1333 |
| DdeI | CTNAG | 7 cut(s) | 227, 329, 335, 873, 939, 948, 966 |
| DpnI | GATC | 8 cut(s) | 104, 111, 123, 435, 795, 807, 975, 1296 |
| DpnII | GATC | 8 cut(s) | 102, 109, 121, 433, 793, 805, 973, 1294 |
| DriI | GACNNNNNGTC | 2 cut(s) | 338, 1155 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 338, 1155 |
| Eco24I | GRGCYC | 1 cut(s) | 1340 |
| Eco32I | GATATC | 1 cut(s) | 367 |
| Eco47I | GGWCC | 2 cut(s) | 344, 394 |
| Eco57I | CTGAAG | 1 cut(s) | 138 |
| Eco81I | CCTNAGG | 1 cut(s) | 948 |
| Eco88I | CYCGRG | 1 cut(s) | 1339 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 839 |
| EcoRV | GATATC | 1 cut(s) | 367 |
| EcoT22I | ATGCAT | 1 cut(s) | 751 |
| EcoT38I | GRGCYC | 1 cut(s) | 1340 |
| Esp3I | CGTCTC | 1 cut(s) | 1200 |
| FaeI | CATG | 5 cut(s) | 537, 731, 996, 1085, 1336 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 604, 636 |
| FatI | CATG | 5 cut(s) | 533, 727, 992, 1081, 1332 |
| FauNDI | CATATG | 1 cut(s) | 751 |
| FbaI | TGATCA | 2 cut(s) | 973, 1294 |
| FokI | GGATG | 1 cut(s) | 599 |
| FriOI | GRGCYC | 1 cut(s) | 1340 |
| FspBI | CTAG | 3 cut(s) | 456, 482, 836 |
| GlaI | GCGC | 1 cut(s) | 390 |
| HapII | CCGG | 2 cut(s) | 582, 1139 |
| HgaI | GACGC | 1 cut(s) | 328 |
| HhaI | GCGC | 1 cut(s) | 391 |
| Hin1II | CATG | 5 cut(s) | 537, 731, 996, 1085, 1336 |
| Hin6I | GCGC | 1 cut(s) | 389 |
| HinP1I | GCGC | 1 cut(s) | 389 |
| HincII | GTYRAC | 1 cut(s) | 1093 |
| HindII | GTYRAC | 1 cut(s) | 1093 |
| HindIII | AAGCTT | 1 cut(s) | 1064 |
| HpaII | CCGG | 2 cut(s) | 582, 1139 |
| HphI | GGTGA | 3 cut(s) | 551, 711, 856 |
| Hpy166II | GTNNAC | 5 cut(s) | 97, 133, 210, 1093, 1352 |
| Hpy188I | TCNGA | 8 cut(s) | 45, 78, 153, 332, 371, 745, 1199, 1310 |
| Hpy8I | GTNNAC | 5 cut(s) | 97, 133, 210, 1093, 1352 |
| Hpy99I | CGWCG | 4 cut(s) | 157, 254, 344, 857 |
| HpyAV | CCTTC | 5 cut(s) | 208, 284, 572, 630, 871 |
| HpyCH4III | ACNGT | 3 cut(s) | 254, 709, 1255 |
| HpyCH4IV | ACGT | 3 cut(s) | 663, 855, 1209 |
| HpyCH4V | TGCA | 1 cut(s) | 749 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 405 |
| HpyF3I | CTNAG | 7 cut(s) | 227, 329, 335, 873, 939, 948, 966 |
| HpySE526I | ACGT | 3 cut(s) | 663, 855, 1209 |
| Hsp92II | CATG | 5 cut(s) | 537, 731, 996, 1085, 1336 |
| HspAI | GCGC | 1 cut(s) | 389 |
| Kpn2I | TCCGGA | 1 cut(s) | 1138 |
| Ksp22I | TGATCA | 2 cut(s) | 973, 1294 |
| Kzo9I | GATC | 8 cut(s) | 102, 109, 121, 433, 793, 805, 973, 1294 |
| LmnI | GCTCC | 4 cut(s) | 316, 515, 531, 982 |
| LpnPI | CCDG | 9 cut(s) | 129, 377, 433, 595, 960, 1050, 1133, 1152, 1266 |
| LweI | GCATC | 2 cut(s) | 736, 1331 |
| MaeI | CTAG | 3 cut(s) | 456, 482, 836 |
| MaeII | ACGT | 3 cut(s) | 663, 855, 1209 |
| MaeIII | GTNAC | 1 cut(s) | 689 |
| MalI | GATC | 8 cut(s) | 104, 111, 123, 435, 795, 807, 975, 1296 |
| MboI | GATC | 8 cut(s) | 102, 109, 121, 433, 793, 805, 973, 1294 |
| MboII | GAAGA | 9 cut(s) | 104, 131, 668, 833, 937, 952, 1240, 1261, 1325 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MhlI | GDGCHC | 1 cut(s) | 1340 |
| MlyI | GAGTC | 1 cut(s) | 88 |
| MmeI | TCCRAC | 1 cut(s) | 176 |
| MnlI | CCTC | 6 cut(s) | 32, 338, 732, 835, 907, 943 |
| Mph1103I | ATGCAT | 1 cut(s) | 751 |
| MroI | TCCGGA | 1 cut(s) | 1138 |
| MroXI | GAANNNNTTC | 1 cut(s) | 594 |
| MseI | TTAA | 8 cut(s) | 381, 491, 782, 789, 1068, 1244, 1271, 1356 |
| MspA1I | CMGCKG | 1 cut(s) | 359 |
| MspI | CCGG | 2 cut(s) | 582, 1139 |
| MspR9I | CCNGG | 1 cut(s) | 583 |
| MvnI | CGCG | 1 cut(s) | 389 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 405 |
| NciI | CCSGG | 1 cut(s) | 583 |
| NdeI | CATATG | 1 cut(s) | 751 |
| NdeII | GATC | 8 cut(s) | 102, 109, 121, 433, 793, 805, 973, 1294 |
| NlaIII | CATG | 5 cut(s) | 537, 731, 996, 1085, 1336 |
| NlaIV | GGNNCC | 3 cut(s) | 312, 527, 1118 |
| NsiI | ATGCAT | 1 cut(s) | 751 |
| NspI | RCATGY | 2 cut(s) | 537, 996 |
| NspV | TTCGAA | 1 cut(s) | 628 |
| PaeR7I | CTCGAG | 1 cut(s) | 1339 |
| PciI | ACATGT | 2 cut(s) | 533, 992 |
| PdmI | GAANNNNTTC | 1 cut(s) | 594 |
| PfeI | GAWTC | 9 cut(s) | 4, 53, 200, 243, 590, 740, 887, 1001, 1040 |
| PflFI | GACNNNGTC | 1 cut(s) | 662 |
| PleI | GAGTC | 1 cut(s) | 87 |
| PpsI | GAGTC | 1 cut(s) | 87 |
| PscI | ACATGT | 2 cut(s) | 533, 992 |
| PspN4I | GGNNCC | 3 cut(s) | 312, 527, 1118 |
| PspPI | GGNCC | 2 cut(s) | 344, 394 |
| PspXI | VCTCGAGB | 1 cut(s) | 1339 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| PsyI | GACNNNGTC | 1 cut(s) | 662 |
| SaqAI | TTAA | 8 cut(s) | 381, 491, 782, 789, 1068, 1244, 1271, 1356 |
| Sau3AI | GATC | 8 cut(s) | 102, 109, 121, 433, 793, 805, 973, 1294 |
| Sau96I | GGNCC | 2 cut(s) | 344, 394 |
| ScaI | AGTACT | 3 cut(s) | 779, 1100, 1237 |
| SchI | GAGTC | 1 cut(s) | 88 |
| ScrFI | CCNGG | 1 cut(s) | 583 |
| SduI | GDGCHC | 1 cut(s) | 1340 |
| SfaNI | GCATC | 2 cut(s) | 736, 1331 |
| Sfr274I | CTCGAG | 1 cut(s) | 1339 |
| SfuI | TTCGAA | 1 cut(s) | 628 |
| SinI | GGWCC | 2 cut(s) | 344, 394 |
| SlaI | CTCGAG | 1 cut(s) | 1339 |
| SmlI | CTYRAG | 3 cut(s) | 497, 1061, 1339 |
| SmoI | CTYRAG | 3 cut(s) | 497, 1061, 1339 |
| SsiI | CCGC | 3 cut(s) | 357, 397, 1214 |
| SspMI | CTAG | 3 cut(s) | 456, 482, 836 |
| StyD4I | CCNGG | 1 cut(s) | 581 |
| TaaI | ACNGT | 3 cut(s) | 254, 709, 1255 |
| TaiI | ACGT | 3 cut(s) | 666, 858, 1212 |
| TaqI | TCGA | 8 cut(s) | 188, 565, 628, 852, 1054, 1170, 1340, 1362 |
| TaqII | GACCGA | 1 cut(s) | 332 |
| TatI | WGTACW | 5 cut(s) | 777, 989, 1098, 1109, 1235 |
| TfiI | GAWTC | 9 cut(s) | 4, 53, 200, 243, 590, 740, 887, 1001, 1040 |
| Tru1I | TTAA | 8 cut(s) | 381, 491, 782, 789, 1068, 1244, 1271, 1356 |
| Tru9I | TTAA | 8 cut(s) | 381, 491, 782, 789, 1068, 1244, 1271, 1356 |
| TscAI | CASTG | 2 cut(s) | 112, 808 |
| TspDTI | ATGAA | 6 cut(s) | 17, 62, 529, 603, 669, 1321 |
| TspGWI | ACGGA | 1 cut(s) | 453 |
| TspRI | CASTG | 2 cut(s) | 112, 808 |
| Tth111I | GACNNNGTC | 1 cut(s) | 662 |
| VpaK11BI | GGWCC | 2 cut(s) | 344, 394 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 839 |
| XapI | RAATTY | 4 cut(s) | 39, 877, 1164, 1358 |
| XceI | RCATGY | 2 cut(s) | 537, 996 |
| XhoI | CTCGAG | 1 cut(s) | 1339 |
| XmnI | GAANNNNTTC | 1 cut(s) | 594 |
| XspI | CTAG | 3 cut(s) | 456, 482, 836 |
| ZrmI | AGTACT | 3 cut(s) | 779, 1100, 1237 |
| Zsp2I | ATGCAT | 1 cut(s) | 751 |