AT3G52690

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Forward (+)
19530736 .. 19531811
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52690.1

Sequence Viewer

Length: 900 bp
ATGTTTAGTACACTTGAGACCTTGATTCTCAAGTATTTGGCTCTTGTGGATGTTCCTTCTCCAGTTTGTATGAAGTCCCTCAGAACTTTGCACCTTGATTGTGTGAATTTCAAGCACAATGAATCTTTTAGTAACCTTATATCTGGCTGTCCTAATCTTGAAGATTTGTTCATGTATCAATATTACCCTCTAGATGTAGTAATGAATTTCATTATTGTGGCACCATCCTTGAAGAGGCTAGTAATTATAGATTACAGAGAGGCCGGGGGCTATGTGATAAATGCTCCTACTTTGAAATACTTGAAAATAAAAGGGTTGAGTCATTGTGGGTTTTGTTTGATTGAGAATGCGCCAGTGTTAGTTGAGGCAAAAATTAGAAATCTTTTTTATATATACAAAGAGAAGATTCTGGGATCCCTCAAGTCAGCCAAACGTCTTTCCTTGGACTTATCACCCTTGGAGTGTCCTATTGATAGTATCTTCTATCAGCTGGTACATCTAGAGATCTATACATGTAAAGAGGAGTGGTGGAATCTACTTAAGCTCATGCTTGATAGCTCGCCTAAATTACAAGTCCTTAAGCTTATTGGTAAAAATTTGGATTTTAAAAAAGTTGGTATGGTCGGCGGTAAATGGAATGAACCAAAGAATGTTCCTGAATGTTTGTTGTCTCAACTTAAGATGTTTGTGTGGACAAGTTACCATTGGGAAAGTGAAGTAGAGAAAGAAGTGGCTACATACATTCTAAAGAATGCAAGACAATTGAAGAATGTAAGTTTCTCTACAAGACCTATTCATTCCAAAGAGCACAACAAGTTGGAAGAGAAATGTAAGATGCTCAAGGAGTTAGATGGTGTTGTTAGGGCTTCAAGTTCATGTCACCTTGTGTTCATCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

299

Amino Acids

34.47

Weight (kDa)

8.66

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 2 - 103 4.1e-07 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 4 - 282 2e-10 At1g61320/AtMIF1, LRR domain
LRR_2 PF07723 26 - 51 8e-09 Leucine Rich Repeat
FBD PF08387 214 - 260 5.3e-18 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AciI CCGC 1 cut(s) 627
AclWI GGATC 2 cut(s) 408, 421
AcsI RAATTY 3 cut(s) 106, 205, 595
AdeI CACNNNGTG 1 cut(s) 886
AfaI GTAC 2 cut(s) 10, 495
AfiI CCNNNNNNNGG 1 cut(s) 234
AflII CTTAAG 3 cut(s) 539, 578, 677
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 7 cut(s) 112, 161, 232, 295, 304, 766, 870
AluBI AGCT 4 cut(s) 490, 544, 558, 583
AluI AGCT 4 cut(s) 490, 544, 558, 583
Alw21I GWGCWC 1 cut(s) 810
Alw26I GTCTC 2 cut(s) 11, 675
AlwI GGATC 2 cut(s) 408, 421
AoxI GGCC 1 cut(s) 261
ApoI RAATTY 3 cut(s) 106, 205, 595
AspLEI GCGC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 2 cut(s) 444, 872
BamHI GGATCC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 810
BccI CCATC 2 cut(s) 232, 845
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 11, 675
BfaI CTAG 3 cut(s) 191, 239, 500
BfrI CTTAAG 3 cut(s) 539, 578, 677
BglII AGATCT 1 cut(s) 504
Bme1390I CCNGG 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 222, 415
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 825
BpmI CTGGAG 1 cut(s) 45
BpuEI CTTGAG 4 cut(s) 14, 35, 404, 824
BpuMI CCSGG 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 264, 441, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 62, 353
BseDI CCNNGG 3 cut(s) 264, 441, 456
BseGI GGATG 2 cut(s) 55, 224
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 2 cut(s) 62, 353
BseRI GAGGAG 1 cut(s) 536
BshFI GGCC 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 810
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 2 cut(s) 11, 675
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 2 cut(s) 352, 757
BsnI GGCC 1 cut(s) 263
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 810
Bsp143I GATC 2 cut(s) 413, 504
BspACI CCGC 1 cut(s) 627
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 222, 415
BspPI GGATC 2 cut(s) 408, 421
BspT107I GGYRCC 1 cut(s) 220
BspTI CTTAAG 3 cut(s) 539, 578, 677
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 2 cut(s) 62, 353
BssECI CCNNGG 3 cut(s) 264, 441, 456
BssMI GATC 2 cut(s) 413, 504
BssT1I CCWWGG 2 cut(s) 441, 456
Bst6I CTCTTC 2 cut(s) 227, 816
BstAFI CTTAAG 3 cut(s) 539, 578, 677
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 1 cut(s) 80
BstENI CCTNNNNNAGG 1 cut(s) 232
BstF5I GGATG 2 cut(s) 55, 224
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 2 cut(s) 416, 507
BstMAI GTCTC 2 cut(s) 11, 675
BstMBI GATC 2 cut(s) 413, 504
BstNSI RCATGY 1 cut(s) 516
BstSCI CCNGG 1 cut(s) 263
BstX2I RGATCY 2 cut(s) 413, 504
BstYI RGATCY 2 cut(s) 413, 504
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 2 cut(s) 55, 224
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 560
CfoI GCGC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 9, 494
CviAII CATG 4 cut(s) 172, 513, 547, 876
CviQI GTAC 2 cut(s) 9, 494
DdeI CTNAG 1 cut(s) 80
DpnI GATC 2 cut(s) 415, 506
DpnII GATC 2 cut(s) 413, 504
DraI TTTAAA 1 cut(s) 607
DraIII CACNNNGTG 1 cut(s) 886
Eam1104I CTCTTC 2 cut(s) 227, 816
EarI CTCTTC 2 cut(s) 227, 816
Eco130I CCWWGG 2 cut(s) 441, 456
Eco31I GGTCTC 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 441, 456
ErhI CCWWGG 2 cut(s) 441, 456
FaeI CATG 4 cut(s) 175, 516, 550, 879
FaqI GGGAC 1 cut(s) 61
FatI CATG 4 cut(s) 171, 512, 546, 875
FokI GGATG 2 cut(s) 62, 211
FspBI CTAG 3 cut(s) 191, 239, 500
GlaI GCGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 264
HhaI GCGC 1 cut(s) 352
Hin1II CATG 4 cut(s) 175, 516, 550, 879
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 5 cut(s) 25, 122, 319, 406, 532
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 444, 872
Hpy166II GTNNAC 2 cut(s) 11, 693
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 4 cut(s) 158, 191, 500, 656
Hpy8I GTNNAC 2 cut(s) 11, 693
HpyAV CCTTC 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 2 cut(s) 91, 755
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 4 cut(s) 175, 516, 550, 879
HspAI GCGC 1 cut(s) 350
Kzo9I GATC 2 cut(s) 413, 504
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 7 cut(s) 75, 129, 277, 366, 395, 476, 669
LweI GCATC 1 cut(s) 825
MaeI CTAG 3 cut(s) 191, 239, 500
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 3 cut(s) 131, 698, 878
MalI GATC 2 cut(s) 415, 506
MboI GATC 2 cut(s) 413, 504
MboII GAAGA 6 cut(s) 173, 244, 415, 472, 778, 833
MfeI CAATTG 1 cut(s) 761
MflI RGATCY 2 cut(s) 413, 504
MhlI GDGCHC 1 cut(s) 810
MluCI AATT 7 cut(s) 106, 205, 243, 372, 566, 595, 761
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 798
MnlI CCTC 7 cut(s) 89, 198, 228, 253, 358, 428, 514
MseI TTAA 4 cut(s) 540, 579, 606, 678
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 490
MspCI CTTAAG 3 cut(s) 539, 578, 677
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 265
MunI CAATTG 1 cut(s) 761
Mva1269I GAATGC 2 cut(s) 352, 757
NciI CCSGG 1 cut(s) 265
NdeII GATC 2 cut(s) 413, 504
NlaIII CATG 4 cut(s) 175, 516, 550, 879
NlaIV GGNNCC 2 cut(s) 222, 415
NmuCI GTSAC 1 cut(s) 878
NspI RCATGY 1 cut(s) 516
PciI ACATGT 1 cut(s) 512
PctI GAATGC 2 cut(s) 352, 757
PfeI GAWTC 4 cut(s) 25, 122, 406, 532
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PscI ACATGT 1 cut(s) 512
PspN4I GGNNCC 2 cut(s) 222, 415
PsuI RGATCY 2 cut(s) 413, 504
PvuII CAGCTG 1 cut(s) 490
RsaI GTAC 2 cut(s) 10, 495
RsaNI GTAC 2 cut(s) 9, 494
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 4 cut(s) 540, 579, 606, 678
Sau3AI GATC 2 cut(s) 413, 504
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 1 cut(s) 825
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 7 cut(s) 14, 29, 419, 539, 578, 677, 839
SmoI CTYRAG 7 cut(s) 14, 29, 419, 539, 578, 677, 839
Sse9I AATT 7 cut(s) 106, 205, 243, 372, 566, 595, 761
SsiI CCGC 1 cut(s) 627
SspI AATATT 1 cut(s) 182
SspMI CTAG 3 cut(s) 191, 239, 500
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 2 cut(s) 441, 456
TaiI ACGT 1 cut(s) 436
TaqI TCGA 1 cut(s) 894
TasI AATT 7 cut(s) 106, 205, 243, 372, 566, 595, 761
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 4 cut(s) 25, 122, 406, 532
Tru1I TTAA 4 cut(s) 540, 579, 606, 678
Tru9I TTAA 4 cut(s) 540, 579, 606, 678
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 878
Tsp45I GTSAC 1 cut(s) 878
TspDTI ATGAA 9 cut(s) 86, 135, 160, 199, 218, 654, 785, 864, 880
TspRI CASTG 1 cut(s) 360
Vha464I CTTAAG 3 cut(s) 539, 578, 677
XagI CCTNNNNNAGG 1 cut(s) 232
XapI RAATTY 3 cut(s) 106, 205, 595
XbaI TCTAGA 2 cut(s) 190, 499
XceI RCATGY 1 cut(s) 516
XspI CTAG 3 cut(s) 191, 239, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.