AT5G56820

F-box FBD LRR-repeat protein At5g56810

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Forward (+)
22976334 .. 22977838
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56820.1

Sequence Viewer

Length: 1308 bp
ATGAAAGCTCCAAGATTGGGAAGTGAAGAGGTTTCATATTCGGATAGGATTAGTTACTTACCTGATGATTTGCTTTTACGAATACTCTCATTCATTCATACAAGCGATGCTATCTCCACAAGCTTATTATCTAAACGATGGAAGTTTGTGTGGAAGATGATGCCAACACTTGATCTTGATGAAGATTCTTGTCGCAATATTGGCACCCTTCGATTTGACGAAGGTTGTTGCATGTTCTTGAAATCACATGAAGCTCCGGTTCTTACAAGTTTGAATCTCAAACTTATGACACCTTCTCATGATATAGATCGTCTTTTATCAAATATTAAACCCATTCTTCATGAGATCACAATCACTTCTTATAGGTACAGTACTATCAGATTCCCAAGGAATCTTAACGTCTGCCAAACACTTGTCGTGATGAAACTCCAAGACAAGGTTCTTGTGGATGTTTCTTTCCCGGTTTGTTTCCGGTCCTTGAAAAGTTTGCACCTCACACGCGTGAAATACTCTTGCCGAGAATCTTTCACCACACTTTTATCAGCTTGTCCTGTTCTTGAAGATTTAGATCTCTTCATTGGCAGAGTTCACTATGACTGTCTTAACTCGTTTACTATATGGGTGCCGTCCTTACAGAGATTATCTATATGTGACGAGTCATACCGCTTTCGTAGCACGACGTTTGAAATAAGTGTTCCTTCTTTGAAATACTTAAAAATCGCGTGTCAGGACAGTTGCTTTAAGTTTGTTGAGGACATGCCTAACTTAGTTGAGGCACATGTTGAAGCTAATCAACATGAAACTAAGAACCTCTTGAGATTTCTCACCTCAGTTGAACGTCTTAAGGATCCAGATCTTACCGATAGAATCTTCCACCAGCTTCTTTATCTTGAGCTGCATTTGCACAAAAGACTCAATGGGGATCGAATTCTGAGTTTGCTCAAACATTCTCCTAATCTACAAACTCTCAAGCTCAACGAGAAACCTTTACGTTCTATCAAGGATCAACCGAATATATCTGTTCGTAAACCGAATTCTGTTCCTGAGTGCTTAACCTTCCATCTTGAAACTCTTGAGTGGCAAGGCTATGCAGGAAGACCGGAAGATAAAGAAATCGCTGTTTACATTTTGGGAAACGCTCTTCGTCTCAACACGGCTACGATCTCTCGATATTTCAGCTCCAGCCGCTTCCGTCACCACCAGAAGAAGGATCTAAAAATTGTGGAGGAGTTAAAATCTATAACTAAGGCCTCAACTTCATGTCAGCTTGTACTTCAACAGTTCATTGAAATTAAATATTCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

435

Amino Acids

50.52

Weight (kDa)

8.76

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 55 4.7e-08 F-box domain
LRR_2 PF07723 159 - 184 1.8e-07 Leucine Rich Repeat
FBD PF08387 344 - 388 3.5e-17 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 203, 622
AccII CGCG 2 cut(s) 501, 722
AciI CCGC 2 cut(s) 664, 1186
AclWI GGATC 5 cut(s) 842, 855, 930, 1011, 1218
AcsI RAATTY 2 cut(s) 927, 1033
AfaI GTAC 3 cut(s) 368, 373, 1272
AfiI CCNNNNNNNGG 3 cut(s) 17, 436, 1207
AflII CTTAAG 1 cut(s) 842
AflIII ACRYGT 2 cut(s) 499, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AleI CACNNNNGTG 1 cut(s) 500
Alw26I GTCTC 1 cut(s) 1151
AlwI GGATC 5 cut(s) 842, 855, 930, 1011, 1218
AoxI GGCC 1 cut(s) 1248
ApeKI GCWGC 1 cut(s) 895
ApoI RAATTY 2 cut(s) 927, 1033
AspS9I GGNCC 1 cut(s) 474
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 3 cut(s) 520, 817, 1187
AvaII GGWCC 1 cut(s) 474
BamHI GGATCC 1 cut(s) 847
BanI GGYRCC 2 cut(s) 203, 622
BbsI GAAGAC 1 cut(s) 1102
BbvI GCAGC 1 cut(s) 882
BccI CCATC 2 cut(s) 132, 1068
BceAI ACGGC 2 cut(s) 610, 1170
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 1151
BfrI CTTAAG 1 cut(s) 842
BglII AGATCT 2 cut(s) 568, 853
BisI GCNGC 2 cut(s) 896, 1186
BlsI GCNGC 2 cut(s) 897, 1187
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 3 cut(s) 205, 624, 849
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 2 cut(s) 97, 150
BpiI GAAGAC 1 cut(s) 1102
BpmI CTGGAG 1 cut(s) 1165
BpuEI CTTGAG 4 cut(s) 835, 911, 953, 1094
BpuMI CCSGG 1 cut(s) 461
BsaBI GATNNNNATC 4 cut(s) 306, 350, 567, 852
BsaJI CCNNGG 1 cut(s) 386
BsaWI WCCGGW 3 cut(s) 256, 471, 1099
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 436, 1207
Bse8I GATNNNNATC 4 cut(s) 306, 350, 567, 852
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 1 cut(s) 454
BseJI GATNNNNATC 4 cut(s) 306, 350, 567, 852
BseLI CCNNNNNNNGG 3 cut(s) 17, 436, 1207
BseMII CTCAG 3 cut(s) 843, 923, 1035
BseRI GAGGAG 1 cut(s) 1241
BseXI GCAGC 1 cut(s) 882
Bsh1236I CGCG 2 cut(s) 501, 722
BshFI GGCC 1 cut(s) 1250
BshNI GGYRCC 2 cut(s) 203, 622
BsiSI CCGG 4 cut(s) 257, 461, 472, 1100
BslI CCNNNNNNNGG 3 cut(s) 17, 436, 1207
BsmAI GTCTC 1 cut(s) 1151
BsmBI CGTCTC 1 cut(s) 1151
BsnI GGCC 1 cut(s) 1250
BspACI CCGC 2 cut(s) 664, 1186
BspANI GGCC 1 cut(s) 1250
BspCNI CTCAG 3 cut(s) 842, 924, 1036
BspFNI CGCG 2 cut(s) 501, 722
BspHI TCATGA 2 cut(s) 298, 340
BspLI GGNNCC 3 cut(s) 205, 624, 849
BspPI GGATC 5 cut(s) 842, 855, 930, 1011, 1218
BspQI GCTCTTC 1 cut(s) 1146
BspT107I GGYRCC 2 cut(s) 203, 622
BspTI CTTAAG 1 cut(s) 842
BssECI CCNNGG 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 386
Bst4CI ACNGT 4 cut(s) 371, 599, 734, 1281
Bst6I CTCTTC 3 cut(s) 21, 578, 1146
BstAFI CTTAAG 1 cut(s) 842
BstDEI CTNAG 6 cut(s) 766, 804, 829, 932, 1044, 1245
BstF5I GGATG 1 cut(s) 454
BstFNI CGCG 2 cut(s) 501, 722
BstMAI GTCTC 1 cut(s) 1151
BstMWI GCNNNNNNNGC 4 cut(s) 201, 672, 901, 1185
BstNSI RCATGY 3 cut(s) 235, 760, 782
BstSCI CCNGG 1 cut(s) 459
BstUI CGCG 2 cut(s) 501, 722
BstV1I GCAGC 1 cut(s) 882
BstV2I GAAGAC 1 cut(s) 1102
BstX2I RGATCY 4 cut(s) 568, 847, 853, 1210
BstYI RGATCY 4 cut(s) 568, 847, 853, 1210
BsuRI GGCC 1 cut(s) 1250
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 454
CciI TCATGA 2 cut(s) 298, 340
Cfr13I GGNCC 1 cut(s) 474
Csp6I GTAC 3 cut(s) 367, 372, 1271
CviAII CATG 8 cut(s) 232, 248, 299, 341, 757, 779, 797, 1260
CviQI GTAC 3 cut(s) 367, 372, 1271
DdeI CTNAG 6 cut(s) 766, 804, 829, 932, 1044, 1245
Eam1104I CTCTTC 3 cut(s) 21, 578, 1146
EarI CTCTTC 3 cut(s) 21, 578, 1146
Eco130I CCWWGG 1 cut(s) 386
Eco147I AGGCCT 1 cut(s) 1250
Eco47I GGWCC 1 cut(s) 474
EcoRI GAATTC 2 cut(s) 927, 1033
EcoT14I CCWWGG 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 386
Esp3I CGTCTC 1 cut(s) 1151
FaeI CATG 8 cut(s) 235, 251, 302, 344, 760, 782, 800, 1263
FalI AAGNNNNNCTT 4 cut(s) 682, 714, 797, 829
FatI CATG 8 cut(s) 231, 247, 298, 340, 756, 778, 796, 1259
Fnu4HI GCNGC 2 cut(s) 896, 1186
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 2 cut(s) 896, 1186
GluI GCNGC 2 cut(s) 896, 1186
GsuI CTGGAG 1 cut(s) 1165
HaeIII GGCC 1 cut(s) 1250
HapII CCGG 4 cut(s) 257, 461, 472, 1100
Hin1II CATG 8 cut(s) 235, 251, 302, 344, 760, 782, 800, 1263
HindIII AAGCTT 1 cut(s) 121
HinfI GANTC 8 cut(s) 185, 274, 381, 391, 521, 656, 867, 912
HpaII CCGG 4 cut(s) 257, 461, 472, 1100
HphI GGTGA 3 cut(s) 520, 817, 1187
Hpy166II GTNNAC 4 cut(s) 589, 612, 1028, 1123
Hpy188I TCNGA 3 cut(s) 43, 380, 933
Hpy8I GTNNAC 4 cut(s) 589, 612, 1028, 1123
Hpy99I CGWCG 1 cut(s) 682
HpyAV CCTTC 6 cut(s) 215, 218, 303, 708, 1066, 1201
HpyCH4III ACNGT 4 cut(s) 371, 599, 734, 1281
HpyCH4IV ACGT 4 cut(s) 399, 680, 838, 991
HpyCH4V TGCA 5 cut(s) 231, 490, 898, 904, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 672, 901, 1185
HpyF3I CTNAG 6 cut(s) 766, 804, 829, 932, 1044, 1245
HpySE526I ACGT 4 cut(s) 399, 680, 838, 991
Hsp92II CATG 8 cut(s) 235, 251, 302, 344, 760, 782, 800, 1263
LguI GCTCTTC 1 cut(s) 1146
LmnI GCTCC 3 cut(s) 13, 259, 1184
Lsp1109I GCAGC 1 cut(s) 882
LweI GCATC 2 cut(s) 97, 150
MaeII ACGT 4 cut(s) 399, 680, 838, 991
MaeIII GTNAC 3 cut(s) 53, 650, 1193
MflI RGATCY 4 cut(s) 568, 847, 853, 1210
MluCI AATT 4 cut(s) 927, 1033, 1218, 1290
MluI ACGCGT 1 cut(s) 499
MlyI GAGTC 2 cut(s) 665, 906
MnlI CCTC 8 cut(s) 22, 503, 745, 766, 821, 838, 1219, 1261
MseI TTAA 9 cut(s) 327, 396, 603, 713, 741, 843, 1052, 1232, 1293
MslI CAYNNNNRTG 1 cut(s) 500
MspCI CTTAAG 1 cut(s) 842
MspI CCGG 4 cut(s) 257, 461, 472, 1100
MspR9I CCNGG 1 cut(s) 461
MvnI CGCG 2 cut(s) 501, 722
MwoI GCNNNNNNNGC 4 cut(s) 201, 672, 901, 1185
NciI CCSGG 1 cut(s) 461
NlaIII CATG 8 cut(s) 235, 251, 302, 344, 760, 782, 800, 1263
NlaIV GGNNCC 3 cut(s) 205, 624, 849
NmeAIII GCCGAG 1 cut(s) 542
NmuCI GTSAC 2 cut(s) 650, 1193
NspI RCATGY 3 cut(s) 235, 760, 782
OliI CACNNNNGTG 1 cut(s) 500
PagI TCATGA 2 cut(s) 298, 340
PceI AGGCCT 1 cut(s) 1250
PciI ACATGT 1 cut(s) 778
PciSI GCTCTTC 1 cut(s) 1146
PfeI GAWTC 6 cut(s) 185, 274, 381, 391, 521, 867
PkrI GCNGC 2 cut(s) 897, 1187
PleI GAGTC 2 cut(s) 664, 906
PpsI GAGTC 2 cut(s) 664, 906
PscI ACATGT 1 cut(s) 778
PspN4I GGNNCC 3 cut(s) 205, 624, 849
PspPI GGNCC 1 cut(s) 474
PsuI RGATCY 4 cut(s) 568, 847, 853, 1210
RsaI GTAC 3 cut(s) 368, 373, 1272
RsaNI GTAC 3 cut(s) 367, 372, 1271
RseI CAYNNNNRTG 1 cut(s) 500
SapI GCTCTTC 1 cut(s) 1146
SaqAI TTAA 9 cut(s) 327, 396, 603, 713, 741, 843, 1052, 1232, 1293
SatI GCNGC 2 cut(s) 896, 1186
Sau96I GGNCC 1 cut(s) 474
ScaI AGTACT 1 cut(s) 373
SchI GAGTC 2 cut(s) 665, 906
ScrFI CCNGG 1 cut(s) 461
SfaNI GCATC 2 cut(s) 97, 150
SinI GGWCC 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 5 cut(s) 814, 842, 890, 968, 1073
SmoI CTYRAG 5 cut(s) 814, 842, 890, 968, 1073
Sse9I AATT 4 cut(s) 927, 1033, 1218, 1290
SseBI AGGCCT 1 cut(s) 1250
SsiI CCGC 2 cut(s) 664, 1186
SspI AATATT 3 cut(s) 199, 325, 1298
StuI AGGCCT 1 cut(s) 1250
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 4 cut(s) 371, 599, 734, 1281
TaiI ACGT 4 cut(s) 402, 683, 841, 994
TaqI TCGA 3 cut(s) 211, 925, 1168
TasI AATT 4 cut(s) 927, 1033, 1218, 1290
TatI WGTACW 2 cut(s) 371, 1270
TauI GCSGC 1 cut(s) 1188
TfiI GAWTC 6 cut(s) 185, 274, 381, 391, 521, 867
Tru1I TTAA 9 cut(s) 327, 396, 603, 713, 741, 843, 1052, 1232, 1293
Tru9I TTAA 9 cut(s) 327, 396, 603, 713, 741, 843, 1052, 1232, 1293
TseFI GTSAC 2 cut(s) 650, 1193
TseI GCWGC 1 cut(s) 895
Tsp45I GTSAC 2 cut(s) 650, 1193
TspGWI ACGGA 1 cut(s) 1181
Vha464I CTTAAG 1 cut(s) 842
VpaK11BI GGWCC 1 cut(s) 474
XapI RAATTY 2 cut(s) 927, 1033
XceI RCATGY 3 cut(s) 235, 760, 782
ZrmI AGTACT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.