Rorug05G0399600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000140
Physical Location & Seq
Forward (+)
54938809 .. 54940206
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0399600.1

Sequence Viewer

Length: 258 bp
ATGGGTCAGATCCAGTATTCTGAGAAATACTTCGATGATACTTACGAGTACAGGCATGTGGTTCTTCCTTCAGAAGTGTCCAAACTACTTCCAAAGAATCGGCTTCTTTCTGAGAATGAATGGCGTGCTATTGGGGTTCAGCAGAGCCGTGGTTGGGTCCACTATGCAATTCATCGCCCTGAGCCACACATCATGCTCTTCAGGAGGCCATTGAACTATCAGCAGCAGCAGGAGAACCAGGCTGTGCTTTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

85

Amino Acids

10.27

Weight (kDa)

9.05

Isoelectric Point (pI)

66.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CKS PF01111 4 - 70 2.4e-37 Cyclin-dependent kinase regulatory subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 54, 184
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 2 cut(s) 214, 252
AjnI CCWGG 1 cut(s) 237
AlwI GGATC 1 cut(s) 4
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 223, 226
Asp700I GAANNNNTTC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 157
AvaII GGWCC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 235, 238
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 239
BisI GCNGC 2 cut(s) 224, 227
BlsI GCNGC 2 cut(s) 225, 228
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 3 cut(s) 12, 102, 171
BseNI ACTGG 1 cut(s) 13
BseXI GCAGC 2 cut(s) 235, 238
BshFI GGCC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 9
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 3 cut(s) 13, 103, 172
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 4
BspQI GCTCTTC 1 cut(s) 203
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 3 cut(s) 21, 111, 180
BstDSI CCRYGG 1 cut(s) 148
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 235, 238
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 56, 193
CviJI RGCY 5 cut(s) 103, 147, 184, 208, 242
CviKI_1 RGCY 5 cut(s) 103, 147, 184, 208, 242
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 21, 111, 180
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 54, 184
EcoRII CCWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 59, 196
FaiI YATR 3 cut(s) 57, 165, 194
FatI CATG 2 cut(s) 55, 192
Fnu4HI GCNGC 2 cut(s) 224, 227
Fsp4HI GCNGC 2 cut(s) 224, 227
GluI GCNGC 2 cut(s) 224, 227
HaeIII GGCC 1 cut(s) 208
Hin1II CATG 2 cut(s) 59, 196
HinfI GANTC 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 4 cut(s) 9, 22, 73, 112
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 167
HpyF3I CTNAG 3 cut(s) 21, 111, 180
Hsp92II CATG 2 cut(s) 59, 196
Kzo9I GATC 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 203
LpnPI CCDG 7 cut(s) 26, 37, 187, 192, 215, 224, 251
Lsp1109I GCAGC 2 cut(s) 235, 238
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 56, 190
MflI RGATCY 1 cut(s) 9
MluCI AATT 1 cut(s) 168
MnlI CCTC 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
NdeII GATC 1 cut(s) 9
NlaIII CATG 2 cut(s) 59, 196
NlaIV GGNNCC 1 cut(s) 158
NspI RCATGY 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 2 cut(s) 225, 228
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 9
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 203
SatI GCNGC 2 cut(s) 224, 227
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 239
SinI GGWCC 1 cut(s) 157
Sse9I AATT 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 237
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 168
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 1 cut(s) 97
TseI GCWGC 2 cut(s) 223, 226
TspDTI ATGAA 2 cut(s) 132, 161
VpaK11BI GGWCC 1 cut(s) 157
XceI RCATGY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.