AT5G38565

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Reverse (-)
15444310 .. 15446297
1988 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38565.1

Sequence Viewer

Length: 1050 bp
ATGGACATATTCAATGGATTGCCAGATGATGTGCTGGTGAAGATTTTATCGTTTGTTCCGACAAAAGTTGCTGTATCCACTTCCATTTTGTCTAAGCGTTGGGAGTTTCTTTGGATGTGGTTGCCTAGACTCGATTTCGGTTCTCCAAAGACTGATCTTCTGGCTTTTCTCAACACTTGTCAATATGATAAGGAGGAGGAGGTTGGACTTGTGGATTTTATTGACAAGAAGCTGCCACTACACAGAGCTCCGTTTCTCGCCATGTACGTGTGCTGGAAATTTCTTATGAATGTTGGGATGAAAACATATTTCCATGTACGTCACCTTGAAACTCGACAACGTGAAGGAAAATCTCTTCAGGACATTCTATCTATTTGTCCTGTTCTTGATGATCTATCGGTGATATGTTCTGTGCATCAAGATGTTAAAGAGTTCACTATTATCGTCCCATCTCTGCAGAGTTTAACTCTCTTTATAGAAAATTGTGAGGTTTTTGATGGGTATGTGATAGATACTCCTTTAAAGTATTTGAAACTTGAAGACGTGCATGAAGAGGAACACTACTGTTTACTTAAGAAAATGCCTAAGCTGAGGGAAGCGTATGTCGATGTTCAATTAGATGATCTCAAGAGTCTTATTGGATCAATCACATCTGTCAAGCGTCTTAACCATATGTTCAGAGAAAAGTCGAAAATCCTTGGCCAGTTGCTCAAGGATTCTCCTAACTTGCGAGTATTGAATATCTTTAAAGTGCAAGGTCATGTGACTCTTTCTACTGGTGTGGATTGTTGGAATCAACCGATTTCTGTACCCGAATGCTTGCTGGAGAGTCTACAAATATTCAACTTGTCACATTACTTTGGAAAACAGCAAGATCTAGATTTTGTTGTTTACATCTTGAAGAACGCTTGTCACTTAAAGACGGCAACAATCCTGGCTGATGAACCCGAACATCTTGTTCCAAACCTTAAGGAGCTGACACTTTCTCCCAGAGCTTCAAGCACATGCCAACTAAGTATTCGCTGCGGACTTGGATCAGAAAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

349

Amino Acids

40.08

Weight (kDa)

6.14

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 43 1.8e-06 F-box domain
FBD PF08387 266 - 311 2.5e-17 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 832
AciI CCGC 1 cut(s) 1026
AclWI GGATC 2 cut(s) 649, 1042
AcoI YGGCCR 1 cut(s) 700
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 3 cut(s) 266, 318, 810
AflII CTTAAG 2 cut(s) 572, 968
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 9 cut(s) 13, 329, 532, 539, 614, 739, 844, 901, 999
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 1 cut(s) 933
AjuI GAANNNNNNNTTGG 2 cut(s) 1002, 1034
AluBI AGCT 5 cut(s) 232, 248, 589, 976, 995
AluI AGCT 5 cut(s) 232, 248, 589, 976, 995
Alw21I GWGCWC 1 cut(s) 250
AlwI GGATC 2 cut(s) 649, 1042
AoxI GGCC 1 cut(s) 700
ApeKI GCWGC 2 cut(s) 232, 1023
ApoI RAATTY 1 cut(s) 278
AsuHPI GGTGA 3 cut(s) 49, 314, 412
BalI TGGCCA 1 cut(s) 702
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 250
BbvCI CCTCAGC 1 cut(s) 590
BbvI GCAGC 2 cut(s) 219, 1010
BccI CCATC 2 cut(s) 457, 491
BceAI ACGGC 1 cut(s) 939
BciT130I CCWGG 1 cut(s) 935
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 2 cut(s) 126, 878
BfmI CTRYAG 1 cut(s) 455
BfrI CTTAAG 2 cut(s) 572, 968
BfuI GTATCC 1 cut(s) 85
BglII AGATCT 1 cut(s) 874
BisI GCNGC 2 cut(s) 233, 1024
BlsI GCNGC 2 cut(s) 234, 1025
Bme1390I CCNGG 1 cut(s) 935
BmgBI CACGTC 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 935
BmsI GCATC 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 546
BplI GAGNNNNNCTC 2 cut(s) 451, 483
BpmI CTGGAG 1 cut(s) 845
Bpu10I CCTNAGC 2 cut(s) 585, 590
BpuEI CTTGAG 2 cut(s) 611, 695
BsaAI YACGTR 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 697
BsaXI ACNNNNNCTCC 2 cut(s) 970, 1000
Bse1I ACTGG 2 cut(s) 703, 781
BseBI CCWGG 1 cut(s) 935
BseDI CCNNGG 1 cut(s) 697
BseGI GGATG 2 cut(s) 120, 303
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 2 cut(s) 703, 781
BseRI GAGGAG 2 cut(s) 209, 212
BseXI GCAGC 2 cut(s) 219, 1010
BshFI GGCC 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 250
BslFI GGGAC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 821
BsnI GGCC 1 cut(s) 702
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 6 cut(s) 154, 391, 622, 641, 874, 1034
BspACI CCGC 1 cut(s) 1026
BspANI GGCC 1 cut(s) 702
BspCNI CTCAG 1 cut(s) 582
BspMAI CTGCAG 1 cut(s) 459
BspPI GGATC 2 cut(s) 649, 1042
BspTI CTTAAG 2 cut(s) 572, 968
BsrI ACTGG 2 cut(s) 703, 781
BssECI CCNNGG 1 cut(s) 697
BssMI GATC 6 cut(s) 154, 391, 622, 641, 874, 1034
BssT1I CCWWGG 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 935
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 2 cut(s) 360, 546
BstAFI CTTAAG 2 cut(s) 572, 968
BstBAI YACGTR 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 821
BstDEI CTNAG 4 cut(s) 93, 585, 590, 1013
BstF5I GGATG 2 cut(s) 120, 303
BstKTI GATC 6 cut(s) 157, 394, 625, 644, 877, 1037
BstMBI GATC 6 cut(s) 154, 391, 622, 641, 874, 1034
BstNI CCWGG 1 cut(s) 935
BstNSI RCATGY 1 cut(s) 1008
BstSCI CCNGG 1 cut(s) 933
BstSFI CTRYAG 1 cut(s) 455
BstV1I GCAGC 2 cut(s) 219, 1010
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 702
BtrI CACGTC 1 cut(s) 544
BtsCI GGATG 2 cut(s) 120, 303
Cac8I GCNNGC 1 cut(s) 821
CseI GACGC 1 cut(s) 650
Csp6I GTAC 3 cut(s) 265, 317, 809
CviAII CATG 5 cut(s) 262, 314, 548, 761, 1005
CviJI RGCY 8 cut(s) 164, 232, 248, 589, 702, 938, 976, 995
CviKI_1 RGCY 8 cut(s) 164, 232, 248, 589, 702, 938, 976, 995
CviQI GTAC 3 cut(s) 265, 317, 809
DdeI CTNAG 4 cut(s) 93, 585, 590, 1013
DpnI GATC 6 cut(s) 156, 393, 624, 643, 876, 1036
DpnII GATC 6 cut(s) 154, 391, 622, 641, 874, 1034
DraI TTTAAA 2 cut(s) 522, 748
EaeI YGGCCR 1 cut(s) 700
Eam1104I CTCTTC 2 cut(s) 360, 546
EarI CTCTTC 2 cut(s) 360, 546
Ecl136II GAGCTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 697
Eco24I GRGCYC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 933
EcoT14I CCWWGG 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 697
FaeI CATG 5 cut(s) 265, 317, 551, 764, 1008
FaqI GGGAC 1 cut(s) 431
FatI CATG 5 cut(s) 261, 313, 547, 760, 1004
FauNDI CATATG 1 cut(s) 672
FblI GTMKAC 1 cut(s) 832
Fnu4HI GCNGC 2 cut(s) 233, 1024
FokI GGATG 2 cut(s) 127, 310
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 2 cut(s) 233, 1024
FspBI CTAG 2 cut(s) 126, 878
GluI GCNGC 2 cut(s) 233, 1024
GsuI CTGGAG 1 cut(s) 845
HaeIII GGCC 1 cut(s) 702
HgaI GACGC 1 cut(s) 650
Hin1II CATG 5 cut(s) 265, 317, 551, 764, 1008
HinfI GANTC 6 cut(s) 129, 631, 716, 766, 793, 829
HphI GGTGA 3 cut(s) 49, 314, 412
Hpy166II GTNNAC 4 cut(s) 435, 569, 833, 892
Hpy188I TCNGA 3 cut(s) 60, 680, 1039
Hpy188III TCNNGA 6 cut(s) 359, 386, 419, 628, 878, 898
Hpy8I GTNNAC 4 cut(s) 435, 569, 833, 892
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4IV ACGT 4 cut(s) 267, 319, 340, 543
HpyCH4V TGCA 4 cut(s) 415, 457, 547, 754
HpyF3I CTNAG 4 cut(s) 93, 585, 590, 1013
HpySE526I ACGT 4 cut(s) 267, 319, 340, 543
Hsp92II CATG 5 cut(s) 265, 317, 551, 764, 1008
Kzo9I GATC 6 cut(s) 154, 391, 622, 641, 874, 1034
LmnI GCTCC 2 cut(s) 253, 973
Lsp1109I GCAGC 2 cut(s) 219, 1010
LweI GCATC 1 cut(s) 424
MaeI CTAG 2 cut(s) 126, 878
MaeII ACGT 4 cut(s) 267, 319, 340, 543
MaeIII GTNAC 4 cut(s) 320, 763, 849, 911
MalI GATC 6 cut(s) 156, 393, 624, 643, 876, 1036
MboI GATC 6 cut(s) 154, 391, 622, 641, 874, 1034
MboII GAAGA 6 cut(s) 52, 149, 347, 551, 563, 913
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 702
MluCI AATT 3 cut(s) 278, 481, 614
MluNI TGGCCA 1 cut(s) 702
MlyI GAGTC 4 cut(s) 123, 640, 760, 838
MmeI TCCRAC 3 cut(s) 83, 184, 770
MnlI CCTC 6 cut(s) 187, 190, 193, 481, 547, 585
Mox20I TGGCCA 1 cut(s) 702
MscI TGGCCA 1 cut(s) 702
MseI TTAA 8 cut(s) 426, 464, 521, 573, 666, 747, 917, 969
MslI CAYNNNNRTG 2 cut(s) 266, 420
Msp20I TGGCCA 1 cut(s) 702
MspCI CTTAAG 2 cut(s) 572, 968
MspR9I CCNGG 1 cut(s) 935
Mva1269I GAATGC 1 cut(s) 821
MvaI CCWGG 1 cut(s) 935
NdeI CATATG 1 cut(s) 672
NdeII GATC 6 cut(s) 154, 391, 622, 641, 874, 1034
NlaIII CATG 5 cut(s) 265, 317, 551, 764, 1008
NmuCI GTSAC 4 cut(s) 320, 763, 849, 911
NspI RCATGY 1 cut(s) 1008
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 264
PctI GAATGC 1 cut(s) 821
PfeI GAWTC 2 cut(s) 716, 793
PkrI GCNGC 2 cut(s) 234, 1025
PleI GAGTC 4 cut(s) 123, 639, 760, 837
PpsI GAGTC 4 cut(s) 123, 639, 760, 837
Ppu21I YACGTR 1 cut(s) 268
Psp124BI GAGCTC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 933
PspGI CCWGG 1 cut(s) 933
PstI CTGCAG 1 cut(s) 459
PsuI RGATCY 1 cut(s) 874
RsaI GTAC 3 cut(s) 266, 318, 810
RsaNI GTAC 3 cut(s) 265, 317, 809
RseI CAYNNNNRTG 2 cut(s) 266, 420
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 8 cut(s) 426, 464, 521, 573, 666, 747, 917, 969
SatI GCNGC 2 cut(s) 233, 1024
Sau3AI GATC 6 cut(s) 154, 391, 622, 641, 874, 1034
SchI GAGTC 4 cut(s) 123, 640, 760, 838
ScrFI CCNGG 1 cut(s) 935
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 266, 420
SmlI CTYRAG 4 cut(s) 572, 626, 710, 968
SmoI CTYRAG 4 cut(s) 572, 626, 710, 968
Sse9I AATT 3 cut(s) 278, 481, 614
SsiI CCGC 1 cut(s) 1026
SspI AATATT 1 cut(s) 840
SspMI CTAG 2 cut(s) 126, 878
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 933
StyI CCWWGG 1 cut(s) 697
TaaI ACNGT 1 cut(s) 566
TaiI ACGT 4 cut(s) 270, 322, 343, 546
TaqI TCGA 4 cut(s) 132, 334, 606, 689
TasI AATT 3 cut(s) 278, 481, 614
TfiI GAWTC 2 cut(s) 716, 793
Tru1I TTAA 8 cut(s) 426, 464, 521, 573, 666, 747, 917, 969
Tru9I TTAA 8 cut(s) 426, 464, 521, 573, 666, 747, 917, 969
TseFI GTSAC 4 cut(s) 320, 763, 849, 911
TseI GCWGC 2 cut(s) 232, 1023
Tsp45I GTSAC 4 cut(s) 320, 763, 849, 911
TspDTI ATGAA 4 cut(s) 302, 314, 564, 957
TspGWI ACGGA 1 cut(s) 240
Vha464I CTTAAG 2 cut(s) 572, 968
XapI RAATTY 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 877
XceI RCATGY 1 cut(s) 1008
XmiI GTMKAC 1 cut(s) 832
XspI CTAG 2 cut(s) 126, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.