Rh5BG475900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000140
Physical Location & Seq
Forward (+)
75752306 .. 75761755
9450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG475900.1

Sequence Viewer

Length: 3009 bp
ATGGATGCAAGTTCTCAAATGCTAAAACCCAAAAGGCAGAAGTTGGATGGGGGAGAAGAGAATCGAGATATGGAAGGAGGCATGAAGAGTTTAAGCAATTTACCTGATGTGGTTCTTGAAAAAATTCTCTCCTTGCTTTCGACAGAGAATGCTATCAGAACAAGCATACTTTCGAAAAGATGGGAATACCTATGGACATCAATTCCCACACTCAACTTTTTTCAAGGGACTCTTAATAAGAGAACTGCCATGGTGAATGCTGTGGAAAGAGCACTTATGCTTCGTCGTGGTGTTGATATAAAAAAGTTTACTCTTTGCTTTGAAGTGCTAGGTGATGCATCTCTTCTTAATCCATGGATCTCTGCCATAGTAAGGCTCAACGTTGAAGAGCTTTTTCTTGGCCTCTATAGCTTGAATGGACCGCTTTGTTTGCCTCATTCTTTGTTTAGTTCCTCAACACTGAAGGACTTGCAACTAGATGTGCCCTTTATTTTCAAAGTTCCTTCTACTGTTTGTCTCTCAAGTTTAAGGAGATTGACACTTAGGTCTGTGGTGTTTTCTGATGAATACTCTACCCAGCAACTCTTTTCTGGTTGTCCAGTTCTTGAGAAATTATCTCTACATAACTGCAATTGGGGGAATCTCAAGTTTGTGAGTATTTGTGCTCCAAAGCTTTTGAGATTGATCATAAATGAAAGTGATTTGCAAATTTCCAGAGATGCAGGCAGTTGCCGGATTATGGTGTTTGGTGTCAGTCTTACATATTTTTCTTATGCGGGTGAATTCCTAAATGAATATACCTTTCATAGCTCATCAGTAAATCAGGCTGAGATTAATGCTTGTCCTACTAAGATGTGGAGACATTTGAGTTACCGATTGTATAAGCTTTTTAGAGGGCTATCTAGTCTGAAGATACTAACTACCTGTTCTTATTTCTTTAAGGTCATGCTGGCTAATGTATCAGAGCTGCTTGCCCAGATGCCCTTGTTCAATGATCTAACCACGTTGGTATTGGATTCAGTACGAGTAGATCTTGGTTGTGAAGGACTATTGAGGATGCTCCAAAACTGTCCCTGTCTTCAAACTCTCGTATTCAGTGAGGGGATTAGCCTGTCCTCTGGTGATGCAAATGATGATGGCGTTTTGGACCCACTGCCTCCTTGTTTCTTGACAAGTCTCAAAGAGATTAAAGTCTATGCATTTTATGGAGATGAGGATGAAATTTATGCAGTAGAGAGTTTGCTTAAGACTGCAATGGTATTGGAGAAGGTGATTGTAACTTTCGCCAAGTCTCTTGAAGGAGGACCAGAGGAGATAAATGATGTTGGCAGACAGGCTCCAAACGTTTCCTTTTCTCCCTCTCCAGAGCGATCATCTTGCTCATCATTCGGTTTCTGGGGAAAAGATAGGACTATGGATGCAAGTTCTCGAATGGTACAATATAAAAAGCAGAAGTTGGATGGAGCAGAAGAGATGATAGGAGGCAGCAAGAGTTTAAGCAATTTACCGGATGTGCTTATTGTAAAAATTCTCTCCTTGCTTCCAACCAAAGATGCTATCAGGACAAGCATTCTGTCTAAAAGATGGGAATACATATGGACATCACTTCCCAATCTCAAGTTTATTCAATGGAAGTTTGAGAACAAGAGAACTCTCTTGGTGAATGCTGTGGAAAGAGCGCTTATTCTTCGTGGCCCTGCTGATATTAAAGAGTTCAGTCTTTCATTTGAAGTGTTGGGGGATGCATTACGTGTTAATACATGGATCTCTGCTGTATTACAGCACAATGTTGAAGATCTTTCTTTAGTCCTGCACAGTTTCAAGGACCCAGTTTCTTTGCCTCGTTCTTTATTTATGTCTGCGACATTGAAAGTGCTCCTGCTGGAACTGCCCTGTATTTTCAAAGTTCCTTCTACTATTTGTTTCTCAAGCCTAAGGAGCTTAACTCTTTCGTCCGTGGTGTTTTCTGATGATTACTCGGCCCAGCAGTTGTTTTCTGGTTGCTCAGTTCTTGAGGAAATATTTCTATATGGTTGCAATTGGGCAAATCTCAACTTTGTGAGTATTTCTGCTCCGAAGCTTTTGAGGTTTACCATAGATGAAGGGGATTCACAAATTTTAAGAGGTTCAGATGGTTGTCAGATTATGGTACTTGGAGTTAGACTCGCATATTTTTCTTACACAGGTGAGTTCCTAGATGACTATTGCTTTTGTAACTCATCAGCAAATGAAGCTCTGATATCTCTTAATTCTATCAAGAGGGTCCAACATGTTAGTTACCGGTTGTATAAGCTTCTTAATGGGCTCTCTAGTGTGAAACACCTAACCATCTGTGATACGTCCTTTGAGGTGGTTCAGACTAATGCTTCAGTACATCTTATGCCCTCGTTCAATAATCTAACCACCTTGATATTTGAACGAGTGGAAGTAGATCTCGGTTGCAAAGGACTATTGACCTTTCTTCAAAATTGTCCTTGTCTTAAGTATCTTATATTCTGTGAGGGAATTGGTCTGTACTCAGATGATGCAAAAGATGATGGGATGTTCGAGCCACTGCCTCCATGTTTCTTGAATAGTCTTGAAGAGATTGATGTCTTAGAATTTTGTGGAGATGAGGATGAGCTTCATGCAATGAAGGTCTTGCTAAAATGTGCAATGGTCTTGAAAAAGTTTGTGAGTATTTGTGCTCCCAAGCTTTTGAGAGATGAAGGGGATTCACAAATTTTAAGAGGTTCAGATGGTTGCCAGATTATGGTATTTGGAGTTAGTCTCACATATTTTTCTTACTGGGGTGAGTTCCTAGATGACTATTCCTTTTATAACTCATCTGCAAGTGAAGCTCATGTATCTCTTAATTCTCTGAGGGTCAGACATATTAGTTATCGGTTGTATAAGCTCCTTAGAGGCCTTTCTAATGTGATGGACCTAACTATCTGTTATACTTCCTTTGAGGTGGTTCAGACCAATGCTCCAGAACTTCTTGCCAGATGCCCTTGTTCTATAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

1002

Amino Acids

112.46

Weight (kDa)

5.64

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 31 - 68 9.2e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 96 - 423 5.4e-11 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 117 - 234 4e-12 FBD-associated F-box protein At5g56370, LRR repeats
F-box PF00646 499 - 539 3.8e-09 F-box domain
LRR_At1g61320_AtMIF1 PF23622 569 - 832 2.2e-11 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 586 - 694 5.2e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2820
AasI GACNNNNNNGTC 1 cut(s) 544
AccB7I CCANNNNNTGG 1 cut(s) 2752
AciI CCGC 2 cut(s) 422, 776
AclI AACGTT 2 cut(s) 381, 1344
AclWI GGATC 2 cut(s) 365, 1772
AcsI RAATTY 8 cut(s) 123, 708, 782, 1221, 1527, 2115, 2600, 2721
AcuI CTGAAG 3 cut(s) 482, 929, 2352
AfaI GTAC 5 cut(s) 1023, 1437, 2151, 2373, 2516
AfeI AGCGCT 1 cut(s) 1680
AfiI CCNNNNNNNGG 3 cut(s) 372, 739, 2752
AflII CTTAAG 2 cut(s) 1244, 2480
AflIII ACRYGT 2 cut(s) 1750, 2269
AgeI ACCGGT 1 cut(s) 2280
Alw21I GWGCWC 4 cut(s) 274, 667, 1878, 2689
Alw26I GTCTC 5 cut(s) 521, 853, 1181, 1296, 2774
AlwI GGATC 2 cut(s) 365, 1772
Aor51HI AGCGCT 1 cut(s) 1680
AoxI GGCC 4 cut(s) 400, 1693, 1980, 2905
ApeKI GCWGC 2 cut(s) 967, 1485
ApoI RAATTY 8 cut(s) 123, 708, 782, 1221, 1527, 2115, 2600, 2721
AseI ATTAAT 1 cut(s) 834
AsiGI ACCGGT 1 cut(s) 2280
Asp700I GAANNNNTTC 2 cut(s) 123, 2022
AspLEI GCGC 1 cut(s) 1681
AspS9I GGNCC 8 cut(s) 419, 1147, 1304, 1694, 1825, 1981, 2263, 2923
AsuHPI GGTGA 8 cut(s) 265, 344, 791, 1133, 1282, 1672, 2198, 2804
AsuII TTCGAA 1 cut(s) 173
AvaII GGWCC 6 cut(s) 419, 1147, 1304, 1825, 2263, 2923
AxyI CCTNAGG 1 cut(s) 1934
BaeGI GKGCMC 1 cut(s) 486
BanII GRGCYC 1 cut(s) 2307
BbsI GAAGAC 1 cut(s) 1070
Bbv12I GWGCWC 4 cut(s) 274, 667, 1878, 2689
BbvI GCAGC 2 cut(s) 954, 1497
BcgI CGANNNNNNTGC 2 cut(s) 1359, 1393
BclI TGATCA 1 cut(s) 684
BcoDI GTCTC 5 cut(s) 521, 853, 1181, 1296, 2774
BfaI CTAG 6 cut(s) 329, 476, 903, 2195, 2310, 2801
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 1 cut(s) 1682
BfrI CTTAAG 2 cut(s) 1244, 2480
BglII AGATCT 3 cut(s) 1030, 1795, 2431
BisI GCNGC 2 cut(s) 968, 1486
BlsI GCNGC 2 cut(s) 969, 1487
Bme18I GGWCC 6 cut(s) 419, 1147, 1304, 1825, 2263, 2923
BmgT120I GGNCC 8 cut(s) 419, 1147, 1304, 1694, 1825, 1981, 2263, 2923
BmiI GGNNCC 4 cut(s) 1149, 1338, 1827, 2264
BmrI ACTGGG 2 cut(s) 1823, 2797
BmuI ACTGGG 2 cut(s) 1823, 2797
BpiI GAAGAC 1 cut(s) 1070
BplI GAGNNNNNCTC 6 cut(s) 1930, 1962, 2148, 2180, 2754, 2786
BpmI CTGGAG 2 cut(s) 1347, 2955
Bpu14I TTCGAA 1 cut(s) 173
BpuEI CTTGAG 6 cut(s) 505, 626, 629, 1601, 1912, 2033
BsaAI YACGTR 1 cut(s) 1751
BsaJI CCNNGG 3 cut(s) 249, 353, 1956
BsaWI WCCGGW 2 cut(s) 1507, 2280
BsaXI ACNNNNNCTCC 2 cut(s) 2953, 2983
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 739, 2752
Bse118I RCCGGY 1 cut(s) 2280
Bse1I ACTGG 3 cut(s) 599, 1829, 2792
Bse21I CCTNAGG 1 cut(s) 1934
Bse3DI GCAATG 3 cut(s) 1260, 2637, 2661
BseDI CCNNGG 3 cut(s) 249, 353, 1956
BseLI CCNNNNNNNGG 3 cut(s) 372, 739, 2752
BseMI GCAATG 3 cut(s) 1260, 2637, 2661
BseMII CTCAG 4 cut(s) 819, 2019, 2532, 2852
BseNI ACTGG 3 cut(s) 599, 1829, 2792
BseRI GAGGAG 1 cut(s) 1325
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 2 cut(s) 954, 1497
BseYI CCCAGC 2 cut(s) 576, 1983
BsgI GTGCAG 1 cut(s) 1796
BshFI GGCC 4 cut(s) 402, 1695, 1982, 2907
BshTI ACCGGT 1 cut(s) 2280
BsiHKAI GWGCWC 4 cut(s) 274, 667, 1878, 2689
BsiSI CCGG 3 cut(s) 733, 1508, 2281
BslFI GGGAC 2 cut(s) 241, 1056
BslI CCNNNNNNNGG 3 cut(s) 372, 739, 2752
BsmAI GTCTC 5 cut(s) 521, 853, 1181, 1296, 2774
BsmFI GGGAC 2 cut(s) 241, 1056
BsmI GAATGC 4 cut(s) 154, 262, 1569, 1669
BsnI GGCC 4 cut(s) 402, 1695, 1982, 2907
Bsp119I TTCGAA 1 cut(s) 173
Bsp1286I GDGCHC 6 cut(s) 274, 486, 667, 1878, 2307, 2689
Bsp143I GATC 8 cut(s) 357, 684, 994, 1030, 1370, 1764, 1795, 2431
Bsp19I CCATGG 2 cut(s) 249, 353
BspACI CCGC 2 cut(s) 422, 776
BspANI GGCC 4 cut(s) 402, 1695, 1982, 2907
BspCNI CTCAG 4 cut(s) 820, 2018, 2531, 2853
BspLI GGNNCC 4 cut(s) 1149, 1338, 1827, 2264
BspPI GGATC 2 cut(s) 365, 1772
BspQI GCTCTTC 1 cut(s) 381
BspT104I TTCGAA 1 cut(s) 173
BspTI CTTAAG 2 cut(s) 1244, 2480
BsrDI GCAATG 3 cut(s) 1260, 2637, 2661
BsrFI RCCGGY 1 cut(s) 2280
BsrI ACTGG 3 cut(s) 599, 1829, 2792
BssAI RCCGGY 1 cut(s) 2280
BssECI CCNNGG 3 cut(s) 249, 353, 1956
BssMI GATC 8 cut(s) 357, 684, 994, 1030, 1370, 1764, 1795, 2431
BssT1I CCWWGG 2 cut(s) 249, 353
Bst4CI ACNGT 3 cut(s) 511, 1070, 1817
Bst6I CTCTTC 6 cut(s) 51, 80, 348, 381, 1464, 2577
BstAFI CTTAAG 2 cut(s) 1244, 2480
BstBAI YACGTR 1 cut(s) 1751
BstBI TTCGAA 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 724, 951, 972
BstDEI CTNAG 9 cut(s) 542, 828, 849, 1934, 2005, 2518, 2596, 2861, 2900
BstDSI CCRYGG 3 cut(s) 249, 353, 1956
BstH2I RGCGCY 1 cut(s) 1682
BstHHI GCGC 1 cut(s) 1681
BstKTI GATC 8 cut(s) 360, 687, 997, 1033, 1373, 1767, 1798, 2434
BstMAI GTCTC 5 cut(s) 521, 853, 1181, 1296, 2774
BstMBI GATC 8 cut(s) 357, 684, 994, 1030, 1370, 1764, 1795, 2431
BstMWI GCNNNNNNNGC 6 cut(s) 408, 430, 1888, 1938, 2231, 2837
BstNSI RCATGY 1 cut(s) 2273
BstSFI CTRYAG 1 cut(s) 406
BstSLI GKGCMC 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 954, 1497
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 5 cut(s) 357, 1030, 1764, 1795, 2431
BstYI RGATCY 5 cut(s) 357, 1030, 1764, 1795, 2431
Bsu36I CCTNAGG 1 cut(s) 1934
BsuRI GGCC 4 cut(s) 402, 1695, 1982, 2907
BtgI CCRYGG 3 cut(s) 249, 353, 1956
BtsI GCAGTG 2 cut(s) 1151, 2552
BtsIMutI CAGTG 4 cut(s) 458, 1102, 1151, 2552
Cac8I GCNNGC 3 cut(s) 724, 951, 972
CfoI GCGC 1 cut(s) 1681
Cfr10I RCCGGY 1 cut(s) 2280
Cfr13I GGNCC 8 cut(s) 419, 1147, 1304, 1694, 1825, 1981, 2263, 2923
Csp6I GTAC 5 cut(s) 1022, 1436, 2150, 2372, 2515
CspAI ACCGGT 1 cut(s) 2280
CviAII CATG 9 cut(s) 82, 250, 354, 946, 1761, 2270, 2562, 2627, 2843
CviQI GTAC 5 cut(s) 1022, 1436, 2150, 2372, 2515
DdeI CTNAG 9 cut(s) 542, 828, 849, 1934, 2005, 2518, 2596, 2861, 2900
DpnI GATC 8 cut(s) 359, 686, 996, 1032, 1372, 1766, 1797, 2433
DpnII GATC 8 cut(s) 357, 684, 994, 1030, 1370, 1764, 1795, 2431
DrdI GACNNNNNNGTC 1 cut(s) 544
DseDI GACNNNNNNGTC 1 cut(s) 544
Eam1104I CTCTTC 6 cut(s) 51, 80, 348, 381, 1464, 2577
EarI CTCTTC 6 cut(s) 51, 80, 348, 381, 1464, 2577
Eco130I CCWWGG 2 cut(s) 249, 353
Eco147I AGGCCT 1 cut(s) 2907
Eco24I GRGCYC 1 cut(s) 2307
Eco32I GATATC 1 cut(s) 2241
Eco47I GGWCC 6 cut(s) 419, 1147, 1304, 1825, 2263, 2923
Eco47III AGCGCT 1 cut(s) 1680
Eco57I CTGAAG 3 cut(s) 482, 929, 2352
Eco81I CCTNAGG 1 cut(s) 1934
EcoO109I RGGNCCY 1 cut(s) 1825
EcoRI GAATTC 1 cut(s) 782
EcoRV GATATC 1 cut(s) 2241
EcoT14I CCWWGG 2 cut(s) 249, 353
EcoT22I ATGCAT 3 cut(s) 340, 1201, 1747
EcoT38I GRGCYC 1 cut(s) 2307
ErhI CCWWGG 2 cut(s) 249, 353
FaeI CATG 9 cut(s) 85, 253, 357, 949, 1764, 2273, 2565, 2630, 2846
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 2 cut(s) 241, 1056
FatI CATG 9 cut(s) 81, 249, 353, 945, 1760, 2269, 2561, 2626, 2842
FauI CCCGC 1 cut(s) 769
FauNDI CATATG 1 cut(s) 1595
FbaI TGATCA 1 cut(s) 684
Fnu4HI GCNGC 2 cut(s) 968, 1486
FriOI GRGCYC 1 cut(s) 2307
Fsp4HI GCNGC 2 cut(s) 968, 1486
FspBI CTAG 6 cut(s) 329, 476, 903, 2195, 2310, 2801
GlaI GCGC 1 cut(s) 1680
GluI GCNGC 2 cut(s) 968, 1486
GsaI CCCAGC 2 cut(s) 580, 1987
GsuI CTGGAG 2 cut(s) 1347, 2955
HaeII RGCGCY 1 cut(s) 1682
HaeIII GGCC 4 cut(s) 402, 1695, 1982, 2907
HapII CCGG 3 cut(s) 733, 1508, 2281
HhaI GCGC 1 cut(s) 1681
Hin1II CATG 9 cut(s) 85, 253, 357, 949, 1764, 2273, 2565, 2630, 2846
Hin6I GCGC 1 cut(s) 1679
HinP1I GCGC 1 cut(s) 1679
HindIII AAGCTT 5 cut(s) 671, 884, 2078, 2291, 2693
HinfI GANTC 7 cut(s) 61, 229, 640, 1016, 2108, 2163, 2714
HpaII CCGG 3 cut(s) 733, 1508, 2281
HphI GGTGA 8 cut(s) 265, 344, 791, 1133, 1282, 1672, 2198, 2804
Hpy166II GTNNAC 2 cut(s) 309, 2091
Hpy8I GTNNAC 2 cut(s) 309, 2091
Hpy99I CGWCG 1 cut(s) 288
HpyCH4III ACNGT 3 cut(s) 511, 1070, 1817
HpyCH4IV ACGT 5 cut(s) 381, 1004, 1344, 1750, 2339
HpyF10VI GCNNNNNNNGC 6 cut(s) 408, 430, 1888, 1938, 2231, 2837
HpyF3I CTNAG 9 cut(s) 542, 828, 849, 1934, 2005, 2518, 2596, 2861, 2900
HpySE526I ACGT 5 cut(s) 381, 1004, 1344, 1750, 2339
Hsp92II CATG 9 cut(s) 85, 253, 357, 949, 1764, 2273, 2565, 2630, 2846
HspAI GCGC 1 cut(s) 1679
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 8 cut(s) 357, 684, 994, 1030, 1370, 1764, 1795, 2431
LguI GCTCTTC 1 cut(s) 381
Lsp1109I GCAGC 2 cut(s) 954, 1497
MaeI CTAG 6 cut(s) 329, 476, 903, 2195, 2310, 2801
MaeII ACGT 5 cut(s) 381, 1004, 1344, 1750, 2339
MaeIII GTNAC 4 cut(s) 869, 1276, 2213, 2276
MalI GATC 8 cut(s) 359, 686, 996, 1032, 1372, 1766, 1797, 2433
MboI GATC 8 cut(s) 357, 684, 994, 1030, 1370, 1764, 1795, 2431
MfeI CAATTG 2 cut(s) 631, 2038
MflI RGATCY 5 cut(s) 357, 1030, 1764, 1795, 2431
MhlI GDGCHC 6 cut(s) 274, 486, 667, 1878, 2307, 2689
MlyI GAGTC 2 cut(s) 223, 2157
MmeI TCCRAC 4 cut(s) 24, 1437, 1568, 2290
Mph1103I ATGCAT 3 cut(s) 340, 1201, 1747
MroXI GAANNNNTTC 2 cut(s) 123, 2022
MspCI CTTAAG 2 cut(s) 1244, 2480
MspI CCGG 3 cut(s) 733, 1508, 2281
MunI CAATTG 2 cut(s) 631, 2038
Mva1269I GAATGC 4 cut(s) 154, 262, 1569, 1669
MwoI GCNNNNNNNGC 6 cut(s) 408, 430, 1888, 1938, 2231, 2837
NcoI CCATGG 2 cut(s) 249, 353
NdeI CATATG 1 cut(s) 1595
NdeII GATC 8 cut(s) 357, 684, 994, 1030, 1370, 1764, 1795, 2431
NlaIII CATG 9 cut(s) 85, 253, 357, 949, 1764, 2273, 2565, 2630, 2846
NlaIV GGNNCC 4 cut(s) 1149, 1338, 1827, 2264
NmeAIII GCCGAG 1 cut(s) 1958
NsiI ATGCAT 3 cut(s) 340, 1201, 1747
NspI RCATGY 1 cut(s) 2273
NspV TTCGAA 1 cut(s) 173
PceI AGGCCT 1 cut(s) 2907
PciI ACATGT 1 cut(s) 2269
PciSI GCTCTTC 1 cut(s) 381
PctI GAATGC 4 cut(s) 154, 262, 1569, 1669
PdmI GAANNNNTTC 2 cut(s) 123, 2022
PfeI GAWTC 5 cut(s) 61, 640, 1016, 2108, 2714
PflMI CCANNNNNTGG 1 cut(s) 2752
PinAI ACCGGT 1 cut(s) 2280
PkrI GCNGC 2 cut(s) 969, 1487
PleI GAGTC 2 cut(s) 223, 2157
PpsI GAGTC 2 cut(s) 223, 2157
Ppu21I YACGTR 1 cut(s) 1751
PpuMI RGGWCCY 1 cut(s) 1825
PscI ACATGT 1 cut(s) 2269
PshBI ATTAAT 1 cut(s) 834
PsiI TTATAA 1 cut(s) 2820
Psp1406I AACGTT 2 cut(s) 381, 1344
Psp5II RGGWCCY 1 cut(s) 1825
PspFI CCCAGC 2 cut(s) 576, 1983
PspN4I GGNNCC 4 cut(s) 1149, 1338, 1827, 2264
PspPI GGNCC 8 cut(s) 419, 1147, 1304, 1694, 1825, 1981, 2263, 2923
PspPPI RGGWCCY 1 cut(s) 1825
PsuI RGATCY 5 cut(s) 357, 1030, 1764, 1795, 2431
RsaI GTAC 5 cut(s) 1023, 1437, 2151, 2373, 2516
RsaNI GTAC 5 cut(s) 1022, 1436, 2150, 2372, 2515
SapI GCTCTTC 1 cut(s) 381
SatI GCNGC 2 cut(s) 968, 1486
Sau3AI GATC 8 cut(s) 357, 684, 994, 1030, 1370, 1764, 1795, 2431
Sau96I GGNCC 8 cut(s) 419, 1147, 1304, 1694, 1825, 1981, 2263, 2923
SchI GAGTC 2 cut(s) 223, 2157
SduI GDGCHC 6 cut(s) 274, 486, 667, 1878, 2307, 2689
SfcI CTRYAG 1 cut(s) 406
SfuI TTCGAA 1 cut(s) 173
SinI GGWCC 6 cut(s) 419, 1147, 1304, 1825, 2263, 2923
SmlI CTYRAG 8 cut(s) 520, 605, 644, 1244, 1616, 1927, 2012, 2480
SmoI CTYRAG 8 cut(s) 520, 605, 644, 1244, 1616, 1927, 2012, 2480
SseBI AGGCCT 1 cut(s) 2907
SsiI CCGC 2 cut(s) 422, 776
SspI AATATT 1 cut(s) 2022
SspMI CTAG 6 cut(s) 329, 476, 903, 2195, 2310, 2801
StuI AGGCCT 1 cut(s) 2907
StyI CCWWGG 2 cut(s) 249, 353
TaaI ACNGT 3 cut(s) 511, 1070, 1817
TaiI ACGT 5 cut(s) 384, 1007, 1347, 1753, 2342
TaqI TCGA 5 cut(s) 64, 140, 173, 1429, 2547
TatI WGTACW 2 cut(s) 2371, 2514
TfiI GAWTC 5 cut(s) 61, 640, 1016, 2108, 2714
TscAI CASTG 4 cut(s) 465, 1102, 1158, 2559
TseI GCWGC 2 cut(s) 967, 1485
TspGWI ACGGA 1 cut(s) 1945
TspRI CASTG 4 cut(s) 465, 1102, 1158, 2559
Van91I CCANNNNNTGG 1 cut(s) 2752
Vha464I CTTAAG 2 cut(s) 1244, 2480
VpaK11BI GGWCC 6 cut(s) 419, 1147, 1304, 1825, 2263, 2923
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 8 cut(s) 123, 708, 782, 1221, 1527, 2115, 2600, 2721
XceI RCATGY 1 cut(s) 2273
XcmI CCANNNNNNNNNTGG 1 cut(s) 1009
XmnI GAANNNNTTC 2 cut(s) 123, 2022
XspI CTAG 6 cut(s) 329, 476, 903, 2195, 2310, 2801
Zsp2I ATGCAT 3 cut(s) 340, 1201, 1747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.