Rmu_co8192842.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8192842.1
OG0000140
Physical Location & Seq
Reverse (-)
75 .. 555
481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8192842.1_g000001.1.cds

Sequence Viewer

Length: 408 bp
atgcctttgttcaatgatttaaccactttgatattggaatcatcaccggtagatattcgtagtaaaggactattgaggatactccaaaactgtccttgccttcaaactttgattttctgtgaggggattagcctgtcgtctgaatatgcaaaagatgatggggtattggagccatggcctccatgtttcttggcaagtcttcaagtgatcaaagtcaatacattttacggagacctggaggaaattcatgcattagaggttttgctaaagaatgctaaggtcttggagaagatgagtataacttgctccaataattttcaagaggcaccagagaagaaaagggatgttaacaaacagttatcagatgtccccaaaggatcagagagttgtgaaattgttcttggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

135

Amino Acids

15.03

Weight (kDa)

4.77

Isoelectric Point (pI)

67.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AclWI GGATC 1 cut(s) 385
AcsI RAATTY 1 cut(s) 243
AgeI ACCGGT 1 cut(s) 46
AgsI TTSAA 4 cut(s) 13, 104, 203, 320
AjnI CCWGG 1 cut(s) 234
AjuI GAANNNNNNNTTGG 1 cut(s) 384
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 385
AoxI GGCC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 243
AsiGI ACCGGT 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 36
BanI GGYRCC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 191
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 236
BciVI GTATCC 1 cut(s) 72
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 225
BfuI GTATCC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 171, 327
BmrFI CCNGG 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 46
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 349
BshFI GGCC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 325
BshTI ACCGGT 1 cut(s) 46
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 207, 377
Bsp19I CCATGG 1 cut(s) 173
BspANI GGCC 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 171, 327
BspPI GGATC 1 cut(s) 385
BspT107I GGYRCC 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 2 cut(s) 207, 377
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 92, 357
BstDEI CTNAG 1 cut(s) 276
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 2 cut(s) 210, 380
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 2 cut(s) 207, 377
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 191
BsuI GTATCC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 46
CspAI ACCGGT 1 cut(s) 46
CviAII CATG 3 cut(s) 174, 183, 248
CviJI RGCY 3 cut(s) 132, 172, 178
CviKI_1 RGCY 3 cut(s) 132, 172, 178
DdeI CTNAG 1 cut(s) 276
DpnI GATC 2 cut(s) 209, 379
DpnII GATC 2 cut(s) 207, 377
Eco130I CCWWGG 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 3 cut(s) 177, 186, 251
FaiI YATR 5 cut(s) 147, 175, 184, 249, 299
FaqI GGGAC 1 cut(s) 353
FatI CATG 3 cut(s) 173, 182, 247
FbaI TGATCA 1 cut(s) 207
FokI GGATG 1 cut(s) 356
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 178
HapII CCGG 1 cut(s) 47
Hin1II CATG 3 cut(s) 177, 186, 251
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 1 cut(s) 38
HpaI GTTAAC 1 cut(s) 349
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 3 cut(s) 142, 364, 382
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 2 cut(s) 92, 357
HpyCH4V TGCA 2 cut(s) 149, 251
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 3 cut(s) 177, 186, 251
Ksp22I TGATCA 1 cut(s) 207
KspAI GTTAAC 1 cut(s) 349
Kzo9I GATC 2 cut(s) 207, 377
LmnI GCTCC 2 cut(s) 169, 311
LpnPI CCDG 5 cut(s) 60, 146, 221, 248, 342
MalI GATC 2 cut(s) 209, 379
MboI GATC 2 cut(s) 207, 377
MboII GAAGA 3 cut(s) 191, 301, 346
MluCI AATT 3 cut(s) 243, 313, 393
MnlI CCTC 6 cut(s) 69, 115, 189, 232, 250, 316
Mph1103I ATGCAT 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 2 cut(s) 20, 348
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 173
NdeII GATC 2 cut(s) 207, 377
NlaIII CATG 3 cut(s) 177, 186, 251
NlaIV GGNNCC 2 cut(s) 171, 327
NsiI ATGCAT 1 cut(s) 253
PctI GAATGC 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 38
PinAI ACCGGT 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 171, 327
SaqAI TTAA 2 cut(s) 20, 348
Sau3AI GATC 2 cut(s) 207, 377
ScrFI CCNGG 1 cut(s) 236
SetI ASST 3 cut(s) 237, 261, 282
Sse9I AATT 3 cut(s) 243, 313, 393
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 2 cut(s) 92, 357
TasI AATT 3 cut(s) 243, 313, 393
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 2 cut(s) 20, 348
Tru9I TTAA 2 cut(s) 20, 348
TspDTI ATGAA 1 cut(s) 236
TspGWI ACGGA 1 cut(s) 243
XapI RAATTY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.