Rorug04G0406800

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000140
Physical Location & Seq
Reverse (-)
57049355 .. 57051687
2333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0406800.1

Sequence Viewer

Length: 960 bp
ATGGCTGTAACTCTATCAGCCTCAGCATCTCCATTAACATCAAAATTGATTCTTGGCAAAACCCTCCTCAGATTTTCACCAAAACACTCCCACCCTTTCACTCCCCAAACCAAACAACCCCCATTCAATCCAAATGGACTCATAAAGCTTCATTCTTTACGCCCAGTAGTCCCTATTCTGAAAGCTTCTCCTCCACGAGCTTCTTCAAATGGGTTTGAGGAAGATGAGGTCTTGTCAATTTTCCAAGAACGGCCGGTCAAATTTGGGCTTTGGGTGTTGCTTTGGGCCTCTGTTTCACTTGCTTGGTTTGCTGCTTCCGGGGATGCCAATGCAGCTGCCACTGCCGCTGCTGCTGCTGCTGATTCGATTAGAGCTTCCTCTTTCGGCCTGAAGATTGCAAATGGGCTTCGGGGTTTGGGCTGGCCTGATGAGGCTGTGGTGTTTGCATTGGCTACGCTTCCGGTGATTGAGCTTCGTGGGGCTATTCCTGTTGGTTATTGGTTGCAACTCAAGCCTGTTATGCTAACTGTTCTAGCTGTTCTTGGGAACATGGTTCCTGTGCCCTTCATCATACTTTACTTGAAGAGATTTGCATCTTTCCTTGCTGGAAAGAATAAAGCTGCATCTCAGTTCCTTGACTTATTGTTTGAGAAGGCTAAAAAGAAAGCTGGCCCTGTAGAGGAGTTCCAATGGCTTGGTCTGATGTTGTTTGTGGCTGTGCCTTTCCCGGGAACAGGAGCATGGACAGGAGCCATTGTAGCTTCTATTCTTGATATGCCATTTTGGTCAGCAGTGTCCGCAAATTTCTTTGGTGTTGTGTTGGCTGGGCTTCTAGTGAATTTGCTGGTGAACCTTGGTCTCAAATATGCTATTGTTACTGGTATTGTTCTCTTCTTTATCTCTACGTTCATGTGGAGCATCCTTCGGAATCTTAAGAAGTCCTTAAGCTCATCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

319

Amino Acids

34.28

Weight (kDa)

10.07

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sm_multidrug_ex PF06695 157 - 277 4.3e-39 Putative small multi-drug export protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 345, 798
AcoI YGGCCR 1 cut(s) 251
AcsI RAATTY 3 cut(s) 260, 802, 838
AcuI CTGAAG 1 cut(s) 410
AfiI CCNNNNNNNGG 3 cut(s) 679, 728, 734
AflII CTTAAG 2 cut(s) 932, 943
AgsI TTSAA 3 cut(s) 127, 207, 583
Alw26I GTCTC 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 727
AoxI GGCC 5 cut(s) 251, 285, 385, 422, 670
ApeKI GCWGC 8 cut(s) 311, 332, 335, 347, 350, 353, 356, 620
ApoI RAATTY 3 cut(s) 260, 802, 838
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
AspS9I GGNCC 2 cut(s) 285, 671
AsuC2I CCSGG 3 cut(s) 319, 728, 729
AsuHPI GGTGA 3 cut(s) 69, 475, 859
AvaI CYCGRG 1 cut(s) 727
BaeGI GKGCMC 1 cut(s) 564
BauI CACGAG 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 22
BbvI GCAGC 8 cut(s) 298, 322, 334, 337, 340, 343, 344, 607
BceAI ACGGC 1 cut(s) 266
BcnI CCSGG 3 cut(s) 319, 728, 729
BcoDI GTCTC 1 cut(s) 863
BfaI CTAG 2 cut(s) 533, 833
BfmI CTRYAG 1 cut(s) 675
BfrI CTTAAG 2 cut(s) 932, 943
BisI GCNGC 9 cut(s) 312, 333, 336, 345, 348, 351, 354, 357, 621
BlsI GCNGC 9 cut(s) 313, 334, 337, 346, 349, 352, 355, 358, 622
Bme1390I CCNGG 3 cut(s) 319, 728, 729
BmeT110I CYCGRG 1 cut(s) 727
BmgT120I GGNCC 2 cut(s) 285, 671
BmiI GGNNCC 2 cut(s) 555, 751
BmrFI CCNGG 3 cut(s) 319, 728, 729
BmrI ACTGGG 1 cut(s) 158
BmsI GCATC 5 cut(s) 35, 313, 602, 632, 927
BmuI ACTGGG 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 3 cut(s) 319, 728, 729
BsaBI GATNNNNATC 1 cut(s) 592
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 3 cut(s) 318, 727, 853
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 679, 728, 734
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 2 cut(s) 164, 883
Bse8I GATNNNNATC 1 cut(s) 592
BseDI CCNNGG 3 cut(s) 318, 727, 853
BseGI GGATG 2 cut(s) 328, 918
BseJI GATNNNNATC 1 cut(s) 592
BseLI CCNNNNNNNGG 3 cut(s) 679, 728, 734
BseMII CTCAG 3 cut(s) 36, 82, 641
BseNI ACTGG 2 cut(s) 164, 883
BseRI GAGGAG 3 cut(s) 56, 180, 695
BseSI GKGCMC 1 cut(s) 564
BseX3I CGGCCG 1 cut(s) 251
BseXI GCAGC 8 cut(s) 298, 322, 334, 337, 340, 343, 344, 607
BseYI CCCAGC 1 cut(s) 824
Bsh1285I CGRYCG 1 cut(s) 254
BshFI GGCC 5 cut(s) 253, 287, 387, 424, 672
BsiEI CGRYCG 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 727
BsiSI CCGG 4 cut(s) 254, 318, 461, 728
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 679, 728, 734
BsmAI GTCTC 1 cut(s) 863
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 5 cut(s) 253, 287, 387, 424, 672
Bso31I GGTCTC 1 cut(s) 863
BsoBI CYCGRG 1 cut(s) 727
Bsp1286I GDGCHC 1 cut(s) 564
BspACI CCGC 2 cut(s) 345, 798
BspANI GGCC 5 cut(s) 253, 287, 387, 424, 672
BspCNI CTCAG 3 cut(s) 35, 81, 640
BspLI GGNNCC 2 cut(s) 555, 751
BspTI CTTAAG 2 cut(s) 932, 943
BspTNI GGTCTC 1 cut(s) 863
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 2 cut(s) 164, 883
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 3 cut(s) 318, 727, 853
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 853
Bst2BI CACGAG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 2 cut(s) 578, 896
BstAFI CTTAAG 2 cut(s) 932, 943
BstC8I GCNNGC 2 cut(s) 422, 670
BstDEI CTNAG 3 cut(s) 22, 68, 627
BstF5I GGATG 2 cut(s) 328, 918
BstMAI GTCTC 1 cut(s) 863
BstMCI CGRYCG 1 cut(s) 254
BstSCI CCNGG 3 cut(s) 317, 726, 727
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 8 cut(s) 298, 322, 334, 337, 340, 343, 344, 607
BstXI CCANNNNNNTGG 1 cut(s) 695
BstZI CGGCCG 1 cut(s) 251
BsuRI GGCC 5 cut(s) 253, 287, 387, 424, 672
BtsCI GGATG 2 cut(s) 328, 918
BtsI GCAGTG 2 cut(s) 339, 798
BtsIMutI CAGTG 2 cut(s) 339, 798
Cac8I GCNNGC 2 cut(s) 422, 670
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 285, 671
Cfr9I CCCGGG 1 cut(s) 727
CviAII CATG 3 cut(s) 550, 741, 910
DdeI CTNAG 3 cut(s) 22, 68, 627
EaeI YGGCCR 1 cut(s) 251
EagI CGGCCG 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 578, 896
EarI CTCTTC 2 cut(s) 578, 896
EclXI CGGCCG 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 853
Eco31I GGTCTC 1 cut(s) 863
Eco52I CGGCCG 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 727
EcoT14I CCWWGG 1 cut(s) 853
ErhI CCWWGG 1 cut(s) 853
FaeI CATG 3 cut(s) 553, 744, 913
FaiI YATR 8 cut(s) 143, 521, 551, 572, 742, 776, 867, 911
FalI AAGNNNNNCTT 2 cut(s) 926, 958
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 549, 740, 909
Fnu4HI GCNGC 9 cut(s) 312, 333, 336, 345, 348, 351, 354, 357, 621
FokI GGATG 2 cut(s) 335, 905
Fsp4HI GCNGC 9 cut(s) 312, 333, 336, 345, 348, 351, 354, 357, 621
FspBI CTAG 2 cut(s) 533, 833
GluI GCNGC 9 cut(s) 312, 333, 336, 345, 348, 351, 354, 357, 621
GsaI CCCAGC 1 cut(s) 828
HaeIII GGCC 5 cut(s) 253, 287, 387, 424, 672
HapII CCGG 4 cut(s) 254, 318, 461, 728
Hin1II CATG 3 cut(s) 553, 744, 913
HindIII AAGCTT 2 cut(s) 146, 183
HinfI GANTC 4 cut(s) 49, 138, 362, 928
HpaII CCGG 4 cut(s) 254, 318, 461, 728
HphI GGTGA 3 cut(s) 69, 475, 859
Hpy166II GTNNAC 1 cut(s) 850
Hpy188I TCNGA 4 cut(s) 71, 180, 702, 927
Hpy188III TCNNGA 1 cut(s) 770
Hpy8I GTNNAC 1 cut(s) 850
HpyAV CCTTC 3 cut(s) 574, 646, 932
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 905
HpyCH4V TGCA 6 cut(s) 332, 398, 446, 505, 593, 623
HpyF3I CTNAG 3 cut(s) 22, 68, 627
HpySE526I ACGT 1 cut(s) 905
Hsp92II CATG 3 cut(s) 553, 744, 913
LmnI GCTCC 3 cut(s) 737, 749, 915
Lsp1109I GCAGC 8 cut(s) 298, 322, 334, 337, 340, 343, 344, 607
LweI GCATC 5 cut(s) 35, 313, 602, 632, 927
MaeI CTAG 2 cut(s) 533, 833
MaeII ACGT 1 cut(s) 905
MaeIII GTNAC 2 cut(s) 7, 874
MboII GAAGA 5 cut(s) 195, 233, 403, 595, 883
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 5 cut(s) 44, 237, 260, 802, 838
MlyI GAGTC 1 cut(s) 132
MseI TTAA 3 cut(s) 35, 933, 944
MspA1I CMGCKG 2 cut(s) 335, 347
MspCI CTTAAG 2 cut(s) 932, 943
MspI CCGG 4 cut(s) 254, 318, 461, 728
MspR9I CCNGG 3 cut(s) 319, 728, 729
NciI CCSGG 3 cut(s) 319, 728, 729
NlaIII CATG 3 cut(s) 553, 744, 913
NlaIV GGNNCC 2 cut(s) 555, 751
PfeI GAWTC 3 cut(s) 49, 362, 928
PkrI GCNGC 9 cut(s) 313, 334, 337, 346, 349, 352, 355, 358, 622
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 824
PspN4I GGNNCC 2 cut(s) 555, 751
PspPI GGNCC 2 cut(s) 285, 671
PvuII CAGCTG 1 cut(s) 335
SaqAI TTAA 3 cut(s) 35, 933, 944
SatI GCNGC 9 cut(s) 312, 333, 336, 345, 348, 351, 354, 357, 621
Sau96I GGNCC 2 cut(s) 285, 671
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 319, 728, 729
SduI GDGCHC 1 cut(s) 564
SfaNI GCATC 5 cut(s) 35, 313, 602, 632, 927
SfcI CTRYAG 1 cut(s) 675
SmaI CCCGGG 1 cut(s) 729
SmlI CTYRAG 3 cut(s) 509, 932, 943
SmoI CTYRAG 3 cut(s) 509, 932, 943
Sse9I AATT 5 cut(s) 44, 237, 260, 802, 838
SsiI CCGC 2 cut(s) 345, 798
SspMI CTAG 2 cut(s) 533, 833
StyD4I CCNGG 3 cut(s) 317, 726, 727
StyI CCWWGG 1 cut(s) 853
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 908
TaqI TCGA 1 cut(s) 365
TasI AATT 5 cut(s) 44, 237, 260, 802, 838
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 3 cut(s) 49, 362, 928
Tru1I TTAA 3 cut(s) 35, 933, 944
Tru9I TTAA 3 cut(s) 35, 933, 944
TscAI CASTG 2 cut(s) 346, 798
TseI GCWGC 8 cut(s) 311, 332, 335, 347, 350, 353, 356, 620
TspDTI ATGAA 3 cut(s) 140, 556, 898
TspMI CCCGGG 1 cut(s) 727
TspRI CASTG 2 cut(s) 346, 798
Vha464I CTTAAG 2 cut(s) 932, 943
XapI RAATTY 3 cut(s) 260, 802, 838
XmaI CCCGGG 1 cut(s) 727
XspI CTAG 2 cut(s) 533, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.