RLG00000036097

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000140
Physical Location & Seq
Forward (+)
75724139 .. 75725995
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036097

Sequence Viewer

Length: 1152 bp
ATGATGATTATTGTTCACCACATTGCATTGGCTGAATTTTGTTCTCAAAGCAATCTCATCCCACTAGCCATCAATTTCTTCTCCGACTTTTACAGTCTTTATTCGTGGCATTTGGCCTTAATGCTGAATATCTTACGGCGCAATGTTGAAGACTTATCTTTAGAGCTGGATAGCCACAAGGAACCATTTTCATTGCCTCATTCTCTACTTACTTCTGCCACATTGAAAGTGCTGAACCTGTATCTCCCGTGTAGTTTCAAAGTTCCTTCTACTATTTGTTTCTCAAGTCTAAGGGAATTGTCTCTTTGCTCTGTGGTGTTTTCTGATGACTACTCAACCCAGCAGCTGTTTTCTGGTTGCCCAGTCCTTGAAAAATTATCTTTTTCGGAGTGCAATTGGGAGAATATCAAGTTTGTGAGTATTTGTGCTCCTAAACTTTTGAGGTTGAGCATCGATGAAGGCGAGTTGCCAATTTCCAGAGGCTCAAGTGTGTGTCAGATTATGGTGTTTGGAGTTAGTCTGACATATTTTTATTACTCAGGTCAGTTGCTAAATGACTATTGTTTGTGTAGCTCATCAGTACATGAGGCTTATATTAGTATTGATGATACAAAGGGCTCCAGACTTAATAGTTACCTGTTGCAGAAGCTTCTTAGAGGGCTCTCTACTGTGAAGAGCCTTACTATATTTCATCAGAACTTTGAGGTGGCTCTAACTGGTGCATCAGAACTTCTTGCCCAGATGCCCATGTTCAATGATCTAACCACCTTGATATTCGACGGGAGTGTGATAGAACTTGATAGTATAGTACTATTGAGGATACTCCAAAACTGTCCTTGTCTTAGGGATCTGTCATTTCATGAGGGGGTTAGGCTGTGCTCAGTTGATGCAAAAGATGATGGGATGTTGGATGTTCCACTGCCTCCATGTTTCTCGACCAGTCTTAAAGAGATTGGAGTCAGTGAATTTTGTGGAAACCAGAATGAGCTTCGTGCATTAAGGATTTTGCTAAAGAATGCAATTGTCTTGGAGAATATGTTTGTAAGCTACCGCGGTACCCTTGAAGGAAATACAGAGAAGAAAAGGGATCTTAACAAACAGATATCAGATCTCCCAAAAGGGTCACAAAGCTGTGAAATTGATTGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

384

Amino Acids

42.97

Weight (kDa)

5.1

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 44 - 349 3.7e-11 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 46 - 149 9.8e-13 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 307 - 346 6.5e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1055
AccB1I GGYRCC 1 cut(s) 1055
AccII CGCG 1 cut(s) 1053
AciI CCGC 2 cut(s) 1051, 1053
AclWI GGATC 2 cut(s) 855, 1095
AcsI RAATTY 2 cut(s) 35, 965
AfaI GTAC 3 cut(s) 582, 810, 1057
AgsI TTSAA 6 cut(s) 149, 226, 259, 371, 754, 1064
AluBI AGCT 7 cut(s) 166, 346, 573, 649, 988, 1047, 1131
AluI AGCT 7 cut(s) 166, 346, 573, 649, 988, 1047, 1131
Alw21I GWGCWC 2 cut(s) 430, 881
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 2 cut(s) 855, 1095
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 343
ApoI RAATTY 2 cut(s) 35, 965
Asp718I GGTACC 1 cut(s) 1055
AspLEI GCGC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 1039, 1072
BanI GGYRCC 1 cut(s) 1055
BanII GRGCYC 2 cut(s) 620, 663
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 430, 881
BbvI GCAGC 1 cut(s) 355
BccI CCATC 2 cut(s) 77, 893
BceAI ACGGC 1 cut(s) 152
BciVI GTATCC 1 cut(s) 813
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 65
BfuI GTATCC 1 cut(s) 813
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 345
BmcAI AGTACT 1 cut(s) 810
BmiI GGNNCC 3 cut(s) 183, 619, 1057
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 4 cut(s) 459, 731, 732, 877
BmuI ACTGGG 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 604
BpuEI CTTGAG 2 cut(s) 268, 469
Bsa29I ATCGAT 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 1051
BsaXI ACNNNNNCTCC 2 cut(s) 1022, 1052
Bse1I ACTGG 3 cut(s) 362, 721, 939
Bse3DI GCAATG 3 cut(s) 21, 148, 191
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 1051
BseGI GGATG 3 cut(s) 57, 909, 916
BseMI GCAATG 3 cut(s) 21, 148, 191
BseMII CTCAG 2 cut(s) 552, 894
BseNI ACTGG 3 cut(s) 362, 721, 939
BseXI GCAGC 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 1053
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 1055
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 2 cut(s) 430, 881
BsmAI GTCTC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 1021
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 4 cut(s) 430, 620, 663, 881
Bsp143I GATC 4 cut(s) 757, 847, 1087, 1108
BspACI CCGC 2 cut(s) 1051, 1053
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 2 cut(s) 551, 893
BspDI ATCGAT 1 cut(s) 453
BspFNI CGCG 1 cut(s) 1053
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 3 cut(s) 183, 619, 1057
BspPI GGATC 2 cut(s) 855, 1095
BspQI GCTCTTC 1 cut(s) 668
BspT107I GGYRCC 1 cut(s) 1055
BsrDI GCAATG 3 cut(s) 21, 148, 191
BsrI ACTGG 3 cut(s) 362, 721, 939
BssECI CCNNGG 1 cut(s) 1051
BssMI GATC 4 cut(s) 757, 847, 1087, 1108
Bst4CI ACNGT 3 cut(s) 95, 670, 833
Bst6I CTCTTC 1 cut(s) 668
BstDEI CTNAG 5 cut(s) 290, 538, 653, 842, 880
BstDSI CCRYGG 1 cut(s) 1051
BstF5I GGATG 3 cut(s) 57, 909, 916
BstFNI CGCG 1 cut(s) 1053
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 4 cut(s) 760, 850, 1090, 1111
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 4 cut(s) 757, 847, 1087, 1108
BstUI CGCG 1 cut(s) 1053
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 3 cut(s) 847, 1087, 1108
BstYI RGATCY 3 cut(s) 847, 1087, 1108
Bsu15I ATCGAT 1 cut(s) 453
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 1051
BtsCI GGATG 3 cut(s) 57, 909, 916
BtsI GCAGTG 1 cut(s) 917
BtsIMutI CAGTG 2 cut(s) 917, 967
CaiI CAGNNNCTG 1 cut(s) 346
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 141
Cfr42I CCGCGG 1 cut(s) 1054
ClaI ATCGAT 1 cut(s) 453
Csp6I GTAC 3 cut(s) 581, 809, 1056
CviAII CATG 4 cut(s) 584, 748, 860, 927
CviQI GTAC 3 cut(s) 581, 809, 1056
DdeI CTNAG 5 cut(s) 290, 538, 653, 842, 880
DpnI GATC 4 cut(s) 759, 849, 1089, 1110
DpnII GATC 4 cut(s) 757, 847, 1087, 1108
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
Eco24I GRGCYC 2 cut(s) 620, 663
Eco32I GATATC 1 cut(s) 1104
EcoRV GATATC 1 cut(s) 1104
EcoT38I GRGCYC 2 cut(s) 620, 663
FaeI CATG 4 cut(s) 587, 751, 863, 930
FatI CATG 4 cut(s) 583, 747, 859, 926
Fnu4HI GCNGC 1 cut(s) 344
FokI GGATG 3 cut(s) 44, 916, 923
FriOI GRGCYC 2 cut(s) 620, 663
Fsp4HI GCNGC 1 cut(s) 344
FspBI CTAG 1 cut(s) 65
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 344
GsaI CCCAGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 604
HaeIII GGCC 1 cut(s) 116
HhaI GCGC 1 cut(s) 141
Hin1II CATG 4 cut(s) 587, 751, 863, 930
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 1 cut(s) 957
HphI GGTGA 1 cut(s) 8
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 8 cut(s) 85, 325, 388, 498, 522, 696, 727, 1108
Hpy188III TCNNGA 4 cut(s) 477, 621, 860, 934
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 3 cut(s) 276, 452, 1058
HpyCH4III ACNGT 3 cut(s) 95, 670, 833
HpyCH4V TGCA 7 cut(s) 26, 393, 643, 722, 890, 995, 1019
HpyF3I CTNAG 5 cut(s) 290, 538, 653, 842, 880
Hsp92II CATG 4 cut(s) 587, 751, 863, 930
HspAI GCGC 1 cut(s) 139
KpnI GGTACC 1 cut(s) 1059
KspI CCGCGG 1 cut(s) 1054
Kzo9I GATC 4 cut(s) 757, 847, 1087, 1108
LguI GCTCTTC 1 cut(s) 668
LmnI GCTCC 2 cut(s) 433, 623
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 4 cut(s) 459, 731, 732, 877
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 632, 1122
MalI GATC 4 cut(s) 759, 849, 1089, 1110
MboI GATC 4 cut(s) 757, 847, 1087, 1108
MboII GAAGA 4 cut(s) 70, 161, 685, 1090
MfeI CAATTG 2 cut(s) 394, 1020
MflI RGATCY 3 cut(s) 847, 1087, 1108
MhlI GDGCHC 4 cut(s) 430, 620, 663, 881
MluCI AATT 9 cut(s) 35, 73, 296, 374, 394, 471, 965, 1020, 1137
MlyI GAGTC 1 cut(s) 966
MmeI TCCRAC 2 cut(s) 108, 888
MnlI CCTC 9 cut(s) 207, 435, 473, 580, 650, 697, 810, 856, 933
MseI TTAA 5 cut(s) 119, 627, 945, 998, 1092
MspA1I CMGCKG 2 cut(s) 346, 1053
MunI CAATTG 2 cut(s) 394, 1020
Mva1269I GAATGC 1 cut(s) 1021
MvnI CGCG 1 cut(s) 1053
NdeII GATC 4 cut(s) 757, 847, 1087, 1108
NlaIII CATG 4 cut(s) 587, 751, 863, 930
NlaIV GGNNCC 3 cut(s) 183, 619, 1057
NmuCI GTSAC 1 cut(s) 1122
PagI TCATGA 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 668
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PctI GAATGC 1 cut(s) 1021
PkrI GCNGC 1 cut(s) 345
PleI GAGTC 1 cut(s) 965
PpsI GAGTC 1 cut(s) 965
PspFI CCCAGC 1 cut(s) 339
PspN4I GGNNCC 3 cut(s) 183, 619, 1057
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 3 cut(s) 847, 1087, 1108
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 3 cut(s) 582, 810, 1057
RsaNI GTAC 3 cut(s) 581, 809, 1056
SacII CCGCGG 1 cut(s) 1054
SapI GCTCTTC 1 cut(s) 668
SaqAI TTAA 5 cut(s) 119, 627, 945, 998, 1092
SatI GCNGC 1 cut(s) 344
Sau3AI GATC 4 cut(s) 757, 847, 1087, 1108
ScaI AGTACT 1 cut(s) 810
SchI GAGTC 1 cut(s) 966
SduI GDGCHC 4 cut(s) 430, 620, 663, 881
SfaNI GCATC 4 cut(s) 459, 731, 732, 877
Sfr303I CCGCGG 1 cut(s) 1054
SgrBI CCGCGG 1 cut(s) 1054
SmlI CTYRAG 2 cut(s) 283, 484
SmoI CTYRAG 2 cut(s) 283, 484
Sse9I AATT 9 cut(s) 35, 73, 296, 374, 394, 471, 965, 1020, 1137
SsiI CCGC 2 cut(s) 1051, 1053
SspMI CTAG 1 cut(s) 65
TaaI ACNGT 3 cut(s) 95, 670, 833
TaqI TCGA 3 cut(s) 453, 777, 935
TasI AATT 9 cut(s) 35, 73, 296, 374, 394, 471, 965, 1020, 1137
TatI WGTACW 2 cut(s) 580, 808
Tru1I TTAA 5 cut(s) 119, 627, 945, 998, 1092
Tru9I TTAA 5 cut(s) 119, 627, 945, 998, 1092
TscAI CASTG 2 cut(s) 924, 967
TseFI GTSAC 1 cut(s) 1122
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 1 cut(s) 1122
TspDTI ATGAA 4 cut(s) 180, 471, 680, 848
TspRI CASTG 2 cut(s) 924, 967
XapI RAATTY 2 cut(s) 35, 965
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.