AT2G04230

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000140
Physical Location & Seq
Reverse (-)
1446795 .. 1449100
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04230.1

Sequence Viewer

Length: 1347 bp
ATGGAACAGAAATTCAAAACCGATTCTATGAATGAGGACAGAATCAGTGACTTGCCTGATGCTTTGCTTCTACAGATATTGTCTTCACTTCCGACAGAAAACGCCATAGCCACGAGTGTTTTGTCTAAACGTTGGAGATCTCTTTGGACTATGTTGCCAAAACTCAAGTTTGATTCCAATTTCAATCCTGTGTTTGATGATGATAACATAGATCCCACTATGTTTTCAGAGAATGTTTACAAGACTTTGTCTTTACATAAAGCTCCGGTTCTAGAGAGTTTGCATTTGTCATTTGAAGGTAGAACAGATTGTTTGCATGTTGGAATATGGATTGCAACAGCATTTGCTCGCGGTGTGCGTAAATTGGTATTGGATAGTTTCTATCAAGAGGATCAAACTGTCACGCTTCCTAGTGTTTTGTTTAGCTATAATGATTCACTTGAGATCTTGAAACTCAAGTGTGCTATCGATTTAGACTTTCCTTCTCGGGTTTGTTTGAAGTCTCTTAGAAAGCTATACCTTGACCAAGTACATTTCAAAGACGAAGAATCTGTTTGCAATCTTTTATGTGGCTGCCCTAGTCTTCAAGATTTGGTCGTGCATAGATATAGCAATGCCGATGTGGCGACTTTCACAATTGCGTCGCCGTCATTACAAAGATTGACCATAGAAGATCTTAGACAAGAAGGAGGTTATGGAAATGGAAGCTATGTGATAAATGCCCCTGGTTTGAAATACTTGAACATCAACGGGGTTATTGATATTGAGTCTTGTTTGATTGACAAGGCACTAGAGTTAGAGGAGGCAAAAATCAGTAACGTTTCTGGTATAACCAATGAGAACATTCTGGAGTCTCTAACTTCAGCCAAACGTCTTATCTTACACTTATCACCCCTTGAGGTTAAAGTTCCTACTGGTAAAATCTTCGATCAACTAGGCTGTCTAGAGCTACTTACACACGAAAGAGAGTGGTGGAATCTGCTTTCGATCATGCTTGATAGTTCTCCTAAACTACAAATCCTCAAGCTCACGGATGTATATCTGCATGACAACAAAACAAATCCGGACGAACGAAAATGGAATCCACCAAAATGTGCACCGGAATGTTTGTTGTTCCATCTTGAGACATTCTTGTGGATAGGATATGAATGGCAACGAGGTGATGAGAAAGAAGTTGCCACATACATCCTAGAAAACGCAAGACGGTTGAAGAAAGCAACTTTCTCCACAAAACGCATCGGAAGGGAAAAGCTCGAAGATTTTGAGAAGAGGCGTGAGATGCTCAACGAGTTGGCTATTGTGCTCTGGGATTCAAATTCATGTCACCTTGTGTTCGAATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD LRR_2

Protein Analysis

448

Amino Acids

51.31

Weight (kDa)

5.31

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 55 8.1e-10 F-box domain
LRR_At1g61320_AtMIF1 PF23622 103 - 414 2.2e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 110 - 226 1.8e-12 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 168 - 193 3.7e-07 Leucine Rich Repeat
FBD PF08387 363 - 408 5.2e-19 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 351
AccIII TCCGGA 1 cut(s) 1063
AciI CCGC 1 cut(s) 351
AclI AACGTT 2 cut(s) 130, 819
AclWI GGATC 2 cut(s) 206, 399
AcsI RAATTY 2 cut(s) 11, 1315
AcuI CTGAAG 1 cut(s) 846
AdeI CACNNNGTG 1 cut(s) 1330
AfaI GTAC 1 cut(s) 531
AjnI CCWGG 1 cut(s) 724
AluBI AGCT 7 cut(s) 263, 426, 514, 708, 949, 1027, 1252
AluI AGCT 7 cut(s) 263, 426, 514, 708, 949, 1027, 1252
Alw21I GWGCWC 2 cut(s) 1099, 1305
Alw26I GTCTC 3 cut(s) 507, 858, 1118
Alw44I GTGCAC 1 cut(s) 1095
AlwI GGATC 2 cut(s) 206, 399
Ama87I CYCGRG 1 cut(s) 486
Aor13HI TCCGGA 1 cut(s) 1063
ApaLI GTGCAC 1 cut(s) 1095
ApeKI GCWGC 1 cut(s) 573
ApoI RAATTY 2 cut(s) 11, 1315
AsuHPI GGTGA 3 cut(s) 882, 1172, 1316
AsuII TTCGAA 1 cut(s) 1335
AvaI CYCGRG 1 cut(s) 486
BaeGI GKGCMC 1 cut(s) 1099
BauI CACGAG 1 cut(s) 112
BbsI GAAGAC 2 cut(s) 75, 575
Bbv12I GWGCWC 2 cut(s) 1099, 1305
BbvI GCAGC 1 cut(s) 560
BccI CCATC 1 cut(s) 1125
BceAI ACGGC 1 cut(s) 631
BciT130I CCWGG 1 cut(s) 726
BcoDI GTCTC 3 cut(s) 507, 858, 1118
BfaI CTAG 7 cut(s) 272, 411, 579, 791, 935, 944, 1190
BfmI CTRYAG 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 623
BglII AGATCT 3 cut(s) 137, 444, 673
BisI GCNGC 1 cut(s) 574
BlsI GCNGC 1 cut(s) 575
Bme1390I CCNGG 1 cut(s) 726
BmeT110I CYCGRG 1 cut(s) 486
BmrFI CCNGG 1 cut(s) 726
BmsI GCATC 3 cut(s) 49, 1245, 1269
BpiI GAAGAC 2 cut(s) 75, 575
BpmI CTGGAG 1 cut(s) 869
Bpu14I TTCGAA 1 cut(s) 1335
BpuEI CTTGAG 6 cut(s) 149, 440, 461, 917, 1007, 1142
Bsa29I ATCGAT 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 1038
BsaJI CCNNGG 1 cut(s) 724
BsaWI WCCGGW 3 cut(s) 265, 1063, 1099
Bse1I ACTGG 1 cut(s) 919
Bse3DI GCAATG 1 cut(s) 619
Bse8I GATNNNNATC 1 cut(s) 1038
BseAI TCCGGA 1 cut(s) 1063
BseBI CCWGG 1 cut(s) 726
BseCI ATCGAT 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 724
BseGI GGATG 2 cut(s) 1039, 1185
BseJI GATNNNNATC 1 cut(s) 1038
BseMI GCAATG 1 cut(s) 619
BseNI ACTGG 1 cut(s) 919
BseRI GAGGAG 1 cut(s) 815
BseSI GKGCMC 1 cut(s) 1099
BseXI GCAGC 1 cut(s) 560
Bsh1236I CGCG 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 468
BsiHKAI GWGCWC 2 cut(s) 1099, 1305
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 3 cut(s) 266, 1064, 1100
BsmAI GTCTC 3 cut(s) 507, 858, 1118
BsoBI CYCGRG 1 cut(s) 486
Bsp119I TTCGAA 1 cut(s) 1335
Bsp1286I GDGCHC 2 cut(s) 1099, 1305
Bsp13I TCCGGA 1 cut(s) 1063
Bsp143I GATC 7 cut(s) 137, 211, 391, 444, 673, 928, 987
BspACI CCGC 1 cut(s) 351
BspDI ATCGAT 1 cut(s) 468
BspEI TCCGGA 1 cut(s) 1063
BspFNI CGCG 1 cut(s) 351
BspPI GGATC 2 cut(s) 206, 399
BspT104I TTCGAA 1 cut(s) 1335
BsrDI GCAATG 1 cut(s) 619
BsrI ACTGG 1 cut(s) 919
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 7 cut(s) 137, 211, 391, 444, 673, 928, 987
BssSI CACGAG 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 2 cut(s) 400, 1206
Bst6I CTCTTC 1 cut(s) 1262
BstBI TTCGAA 1 cut(s) 1335
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 506, 677
BstF5I GGATG 2 cut(s) 1039, 1185
BstFNI CGCG 1 cut(s) 351
BstKTI GATC 7 cut(s) 140, 214, 394, 447, 676, 931, 990
BstMAI GTCTC 3 cut(s) 507, 858, 1118
BstMBI GATC 7 cut(s) 137, 211, 391, 444, 673, 928, 987
BstMWI GCNNNNNNNGC 2 cut(s) 623, 1279
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 724
BstSFI CTRYAG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 1099
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 560
BstV2I GAAGAC 2 cut(s) 75, 575
BstX2I RGATCY 4 cut(s) 137, 211, 444, 673
BstYI RGATCY 4 cut(s) 137, 211, 444, 673
Bsu15I ATCGAT 1 cut(s) 468
BsuTUI ATCGAT 1 cut(s) 468
BtsCI GGATG 2 cut(s) 1039, 1185
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 349
ClaI ATCGAT 1 cut(s) 468
CseI GACGC 1 cut(s) 630
Csp6I GTAC 1 cut(s) 530
CviAII CATG 4 cut(s) 317, 991, 1046, 1320
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 2 cut(s) 506, 677
DpnI GATC 7 cut(s) 139, 213, 393, 446, 675, 930, 989
DpnII GATC 7 cut(s) 137, 211, 391, 444, 673, 928, 987
DraIII CACNNNGTG 1 cut(s) 1330
Eam1104I CTCTTC 1 cut(s) 1262
EarI CTCTTC 1 cut(s) 1262
Eco57I CTGAAG 1 cut(s) 846
Eco88I CYCGRG 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 724
FaeI CATG 4 cut(s) 320, 994, 1049, 1323
FatI CATG 4 cut(s) 316, 990, 1045, 1319
Fnu4HI GCNGC 1 cut(s) 574
FokI GGATG 2 cut(s) 1046, 1172
Fsp4HI GCNGC 1 cut(s) 574
FspBI CTAG 7 cut(s) 272, 411, 579, 791, 935, 944, 1190
GluI GCNGC 1 cut(s) 574
GsuI CTGGAG 1 cut(s) 869
HapII CCGG 3 cut(s) 266, 1064, 1100
HgaI GACGC 1 cut(s) 630
Hin1II CATG 4 cut(s) 320, 994, 1049, 1323
HpaII CCGG 3 cut(s) 266, 1064, 1100
HphI GGTGA 3 cut(s) 882, 1172, 1316
Hpy166II GTNNAC 2 cut(s) 238, 1097
Hpy188I TCNGA 3 cut(s) 93, 229, 1241
Hpy188III TCNNGA 8 cut(s) 272, 386, 448, 587, 848, 944, 1064, 1121
Hpy8I GTNNAC 2 cut(s) 238, 1097
Hpy99I CGWCG 1 cut(s) 646
HpyAV CCTTC 4 cut(s) 290, 492, 680, 1236
HpyCH4III ACNGT 2 cut(s) 400, 1206
HpyCH4IV ACGT 3 cut(s) 130, 819, 871
HpyCH4V TGCA 7 cut(s) 283, 316, 335, 558, 601, 1045, 1097
HpyF10VI GCNNNNNNNGC 2 cut(s) 623, 1279
HpyF3I CTNAG 2 cut(s) 506, 677
HpySE526I ACGT 3 cut(s) 130, 819, 871
Hsp92II CATG 4 cut(s) 320, 994, 1049, 1323
Kpn2I TCCGGA 1 cut(s) 1063
Kzo9I GATC 7 cut(s) 137, 211, 391, 444, 673, 928, 987
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 1 cut(s) 560
LweI GCATC 3 cut(s) 49, 1245, 1269
MaeI CTAG 7 cut(s) 272, 411, 579, 791, 935, 944, 1190
MaeII ACGT 3 cut(s) 130, 819, 871
MaeIII GTNAC 4 cut(s) 47, 400, 815, 1322
MalI GATC 7 cut(s) 139, 213, 393, 446, 675, 930, 989
MboI GATC 7 cut(s) 137, 211, 391, 444, 673, 928, 987
MboII GAAGA 8 cut(s) 75, 557, 575, 683, 916, 1222, 1268, 1279
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 4 cut(s) 137, 211, 444, 673
MhlI GDGCHC 2 cut(s) 1099, 1305
MluCI AATT 5 cut(s) 11, 178, 362, 636, 1315
MlyI GAGTC 2 cut(s) 776, 860
MmeI TCCRAC 3 cut(s) 113, 116, 301
MnlI CCTC 9 cut(s) 28, 382, 683, 793, 796, 892, 1031, 1151, 1263
MroI TCCGGA 1 cut(s) 1063
MseI TTAA 2 cut(s) 903, 1345
MslI CAYNNNNRTG 3 cut(s) 1090, 1102, 1132
MspI CCGG 3 cut(s) 266, 1064, 1100
MspR9I CCNGG 1 cut(s) 726
MunI CAATTG 1 cut(s) 636
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 2 cut(s) 623, 1279
NdeII GATC 7 cut(s) 137, 211, 391, 444, 673, 928, 987
NlaIII CATG 4 cut(s) 320, 994, 1049, 1323
NmuCI GTSAC 3 cut(s) 47, 400, 1322
NspI RCATGY 1 cut(s) 320
NspV TTCGAA 1 cut(s) 1335
PcsI WCGNNNNNNNCGW 1 cut(s) 355
PfeI GAWTC 9 cut(s) 23, 42, 173, 434, 548, 976, 1081, 1310, 1337
PflFI GACNNNGTC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 575
PleI GAGTC 2 cut(s) 775, 859
PpsI GAGTC 2 cut(s) 775, 859
Psp1406I AACGTT 2 cut(s) 130, 819
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PsuI RGATCY 4 cut(s) 137, 211, 444, 673
PsyI GACNNNGTC 1 cut(s) 247
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
RseI CAYNNNNRTG 3 cut(s) 1090, 1102, 1132
SaqAI TTAA 2 cut(s) 903, 1345
SatI GCNGC 1 cut(s) 574
Sau3AI GATC 7 cut(s) 137, 211, 391, 444, 673, 928, 987
SchI GAGTC 2 cut(s) 776, 860
ScrFI CCNGG 1 cut(s) 726
SduI GDGCHC 2 cut(s) 1099, 1305
SfaNI GCATC 3 cut(s) 49, 1245, 1269
SfcI CTRYAG 1 cut(s) 71
SfuI TTCGAA 1 cut(s) 1335
SmiMI CAYNNNNRTG 3 cut(s) 1090, 1102, 1132
SmlI CTYRAG 6 cut(s) 164, 440, 455, 896, 1022, 1121
SmoI CTYRAG 6 cut(s) 164, 440, 455, 896, 1022, 1121
Sse9I AATT 5 cut(s) 11, 178, 362, 636, 1315
SsiI CCGC 1 cut(s) 351
SspMI CTAG 7 cut(s) 272, 411, 579, 791, 935, 944, 1190
StyD4I CCNGG 1 cut(s) 724
TaaI ACNGT 2 cut(s) 400, 1206
TaiI ACGT 3 cut(s) 133, 822, 874
TaqI TCGA 5 cut(s) 468, 927, 986, 1254, 1335
TasI AATT 5 cut(s) 11, 178, 362, 636, 1315
TatI WGTACW 1 cut(s) 529
TfiI GAWTC 9 cut(s) 23, 42, 173, 434, 548, 976, 1081, 1310, 1337
Tru1I TTAA 2 cut(s) 903, 1345
Tru9I TTAA 2 cut(s) 903, 1345
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 3 cut(s) 47, 400, 1322
TseI GCWGC 1 cut(s) 573
Tsp45I GTSAC 3 cut(s) 47, 400, 1322
TspDTI ATGAA 3 cut(s) 44, 1161, 1308
TspGWI ACGGA 1 cut(s) 1046
TspRI CASTG 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 247
VneI GTGCAC 1 cut(s) 1095
XapI RAATTY 2 cut(s) 11, 1315
XbaI TCTAGA 2 cut(s) 271, 943
XceI RCATGY 1 cut(s) 320
XspI CTAG 7 cut(s) 272, 411, 579, 791, 935, 944, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.