AT3G50710

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000140
Physical Location & Seq
Reverse (-)
18845123 .. 18846905
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50710.1

Sequence Viewer

Length: 1284 bp
ATGGATAGGATTAGTAATCTGTCTGATGATTTGCTTTTGAAGATTGTTTCATCACTTCCTACCAAAGATGTTGTCGTCACAATGCTTTTGTCAAAACGTTGGAAGTTTCTTTGGATGATGGTTCCAAAGCTTCGTTTTGATGATGAGTTTGAACTTGAGCCTTCCTATTACGGGAGATTTCTCAAGTATGTAGACAAATCAATGGTGTTGAATAGAGCTCAGGTTCTAGAAACAGTGAAGTTCAACGTTGGTCCTTGTTGTAGCTCTGAAGATATAGCAACATGGATCAGAATCGGAATGGTTCGCAATATGCGTGAACTTGAAATATCACATTGTGAAGGATATTTCAGGGAACATAGGTCAATCAAACTACCAAAGAGTCTTTATACATATGAAAAACTCGAGGTCTTGAAACTCGCTTCCACGGTAGTTCTGAATGTTCCTATCGATGTTTGTTTTCCATCCTTGAAATCATTACACCTTGTGTGTGTAGAGTACAAAACCAAAAAGTCTCACCGCAGGCTTTTGTCGGGTTGTCCTGTTCTTGAAGAGTTGGTGTTGGACAAATCTTATAACAGTTTCCATGTGCGGTCTTTCTATGTAGAAATACCTACTTTACAGAGCTTATCTATTCTTGATACATCTGGAGAACTGTACGGTGACTTTACGTTTGTGGTCAATGCCCCAGCTTTGAAGTACTTCAACTTTGTAGACTTCTATGGCGACTTGTGCTTGAGAGATAATATGCCTGAGGTGGTTGATGTGAATATTAAAGTCATTTACAGAAATCCCAAGAAGCTATTGGGACCTCTTAAATCAGTCAAGCGTCTCTCTTTATGTTTATCTCCTTCGACGACGCTTCATAACCATATGGAGTTCTATCAGCTTGTTCATTTGGAGTTATGTGGAGACGCTCTAATGTGGTGGGATCTACTTACTTGGATGCTCCAAAGTTCTCCTAAACTACAAGTTCTCAAGATCTACGAATGCAAGTGTGAGGAACATGATTACTTAGACGATCCAATAGAAGAACATTGGGAAGAACCAAGTTCAGTTCCTCAATGTTTGTTGTTCCATCTCAATATTTTCGAGTGGAAATATTACAACGCAGGAGATGAAGAGAAAAAAGTAGTGGCGTACATTCTAAAGAATGCAAGACAGTTAAAGACTGCAACTTTCTCTGCCGCTTCATATTTGTATCCGAAGGAAGAGCGTTCGCGGGAACTCAATGAGTTGGTTTATATGGCTAGAGCTTCAAGCTCATGTCAGCTTCTATTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FBD LRR_2

Protein Analysis

427

Amino Acids

49.87

Weight (kDa)

6.29

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 44 2.2e-08 F-box domain
LRR_At5g56370 PF24758 93 - 234 4.8e-15 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 155 - 180 4.6e-07 Leucine Rich Repeat
FBD PF08387 348 - 393 1.9e-19 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
AccI GTMKAC 2 cut(s) 192, 711
AccII CGCG 1 cut(s) 1219
AciI CCGC 4 cut(s) 517, 589, 1185, 1219
AclI AACGTT 2 cut(s) 97, 246
AclWI GGATC 3 cut(s) 293, 936, 1013
AcuI CTGAAG 1 cut(s) 288
AdeI CACNNNGTG 2 cut(s) 335, 484
AfaI GTAC 4 cut(s) 497, 656, 698, 1139
AfiI CCNNNNNNNGG 1 cut(s) 171
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 3 cut(s) 516, 833, 903
AlwI GGATC 3 cut(s) 293, 936, 1013
Ama87I CYCGRG 1 cut(s) 401
ArsI GACNNNNNNTTYG 4 cut(s) 57, 89, 653, 685
Asp700I GAANNNNTTC 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 251, 806
AsuHPI GGTGA 2 cut(s) 506, 671
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 2 cut(s) 251, 806
AxyI CCTNAGG 1 cut(s) 750
BanII GRGCYC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 220
BccI CCATC 3 cut(s) 112, 469, 1083
BciVI GTATCC 1 cut(s) 1209
BcoDI GTCTC 3 cut(s) 516, 833, 903
BfaI CTAG 2 cut(s) 227, 1248
BfuI GTATCC 1 cut(s) 1209
BglII AGATCT 1 cut(s) 978
BisI GCNGC 1 cut(s) 1185
BlsI GCNGC 1 cut(s) 1186
BmcAI AGTACT 1 cut(s) 698
Bme18I GGWCC 2 cut(s) 251, 806
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 251, 806
BmiI GGNNCC 2 cut(s) 123, 807
BmsI GCATC 1 cut(s) 933
BpmI CTGGAG 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 219
BpuEI CTTGAG 4 cut(s) 167, 176, 754, 959
Bsa29I ATCGAT 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse21I CCTNAGG 1 cut(s) 750
Bse8I GATNNNNATC 1 cut(s) 290
BseCI ATCGAT 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 3 cut(s) 120, 461, 948
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 233, 741
BseYI CCCAGC 1 cut(s) 685
Bsh1236I CGCG 1 cut(s) 1219
BshVI ATCGAT 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 401
BslFI GGGAC 1 cut(s) 819
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 3 cut(s) 516, 833, 903
BsmBI CGTCTC 2 cut(s) 833, 903
BsmFI GGGAC 1 cut(s) 819
BsmI GAATGC 2 cut(s) 992, 1156
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 4 cut(s) 285, 928, 978, 1018
BspACI CCGC 4 cut(s) 517, 589, 1185, 1219
BspCNI CTCAG 2 cut(s) 232, 742
BspDI ATCGAT 1 cut(s) 447
BspFNI CGCG 1 cut(s) 1219
BspLI GGNNCC 2 cut(s) 123, 807
BspPI GGATC 3 cut(s) 293, 936, 1013
BspQI GCTCTTC 1 cut(s) 1203
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 4 cut(s) 285, 928, 978, 1018
Bst4CI ACNGT 6 cut(s) 235, 427, 578, 654, 659, 1161
Bst6I CTCTTC 3 cut(s) 543, 1113, 1203
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 3 cut(s) 219, 750, 1012
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 3 cut(s) 120, 461, 948
BstFNI CGCG 1 cut(s) 1219
BstKTI GATC 4 cut(s) 288, 931, 981, 1021
BstMAI GTCTC 3 cut(s) 516, 833, 903
BstMBI GATC 4 cut(s) 285, 928, 978, 1018
BstMWI GCNNNNNNNGC 1 cut(s) 729
BstUI CGCG 1 cut(s) 1219
BstX2I RGATCY 2 cut(s) 928, 978
BstYI RGATCY 2 cut(s) 928, 978
Bsu15I ATCGAT 1 cut(s) 447
Bsu36I CCTNAGG 1 cut(s) 750
BsuI GTATCC 1 cut(s) 1209
BsuTUI ATCGAT 1 cut(s) 447
BtgI CCRYGG 1 cut(s) 423
BtsCI GGATG 3 cut(s) 120, 461, 948
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 251, 806
ClaI ATCGAT 1 cut(s) 447
CseI GACGC 3 cut(s) 815, 865, 920
Csp6I GTAC 4 cut(s) 496, 655, 697, 1138
CviAII CATG 4 cut(s) 282, 584, 1004, 1263
CviQI GTAC 4 cut(s) 496, 655, 697, 1138
DdeI CTNAG 3 cut(s) 219, 750, 1012
DpnI GATC 4 cut(s) 287, 930, 980, 1020
DpnII GATC 4 cut(s) 285, 928, 978, 1018
DraIII CACNNNGTG 2 cut(s) 335, 484
Eam1104I CTCTTC 3 cut(s) 543, 1113, 1203
EarI CTCTTC 3 cut(s) 543, 1113, 1203
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 251, 806
Eco53kI GAGCTC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 288
Eco81I CCTNAGG 1 cut(s) 750
Eco88I CYCGRG 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 806
EcoT38I GRGCYC 1 cut(s) 220
Esp3I CGTCTC 2 cut(s) 833, 903
FaeI CATG 4 cut(s) 285, 587, 1007, 1266
FaqI GGGAC 1 cut(s) 819
FatI CATG 4 cut(s) 281, 583, 1003, 1262
FauI CCCGC 1 cut(s) 1212
FauNDI CATATG 2 cut(s) 391, 870
FblI GTMKAC 2 cut(s) 192, 711
Fnu4HI GCNGC 1 cut(s) 1185
FokI GGATG 3 cut(s) 127, 448, 955
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 1185
FspBI CTAG 2 cut(s) 227, 1248
GluI GCNGC 1 cut(s) 1185
GsaI CCCAGC 1 cut(s) 689
GsuI CTGGAG 1 cut(s) 666
HgaI GACGC 3 cut(s) 815, 865, 920
Hin1II CATG 4 cut(s) 285, 587, 1007, 1266
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 291, 379
HphI GGTGA 2 cut(s) 506, 671
Hpy166II GTNNAC 3 cut(s) 193, 317, 712
Hpy188I TCNGA 6 cut(s) 25, 268, 290, 296, 435, 1203
Hpy188III TCNNGA 6 cut(s) 227, 409, 545, 635, 645, 976
Hpy8I GTNNAC 3 cut(s) 193, 317, 712
Hpy99I CGWCG 2 cut(s) 856, 859
HpyAV CCTTC 4 cut(s) 171, 332, 858, 1198
HpyCH4III ACNGT 6 cut(s) 235, 427, 578, 654, 659, 1161
HpyCH4IV ACGT 3 cut(s) 97, 246, 668
HpyCH4V TGCA 3 cut(s) 990, 1154, 1172
HpyF10VI GCNNNNNNNGC 1 cut(s) 729
HpyF3I CTNAG 3 cut(s) 219, 750, 1012
HpySE526I ACGT 3 cut(s) 97, 246, 668
Hsp92II CATG 4 cut(s) 285, 587, 1007, 1266
Kzo9I GATC 4 cut(s) 285, 928, 978, 1018
LguI GCTCTTC 1 cut(s) 1203
LmnI GCTCC 1 cut(s) 951
LpnPI CCDG 8 cut(s) 206, 334, 505, 552, 630, 699, 762, 1095
LweI GCATC 1 cut(s) 933
MaeI CTAG 2 cut(s) 227, 1248
MaeII ACGT 3 cut(s) 97, 246, 668
MaeIII GTNAC 2 cut(s) 76, 659
MalI GATC 4 cut(s) 287, 930, 980, 1020
MboI GATC 4 cut(s) 285, 928, 978, 1018
MboII GAAGA 7 cut(s) 52, 281, 560, 1040, 1052, 1130, 1220
MflI RGATCY 2 cut(s) 928, 978
MhlI GDGCHC 1 cut(s) 220
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 2 cut(s) 80, 540
MnlI CCTC 5 cut(s) 397, 745, 819, 991, 1068
MroXI GAANNNNTTC 1 cut(s) 698
MseI TTAA 3 cut(s) 771, 813, 1163
Mva1269I GAATGC 2 cut(s) 992, 1156
MvnI CGCG 1 cut(s) 1219
MwoI GCNNNNNNNGC 1 cut(s) 729
NdeI CATATG 2 cut(s) 391, 870
NdeII GATC 4 cut(s) 285, 928, 978, 1018
NlaIII CATG 4 cut(s) 285, 587, 1007, 1266
NlaIV GGNNCC 2 cut(s) 123, 807
NmuCI GTSAC 2 cut(s) 76, 659
PaeR7I CTCGAG 1 cut(s) 401
PciSI GCTCTTC 1 cut(s) 1203
PcsI WCGNNNNNNNCGW 1 cut(s) 310
PctI GAATGC 2 cut(s) 992, 1156
PdmI GAANNNNTTC 1 cut(s) 698
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 1186
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
PpuMI RGGWCCY 1 cut(s) 806
PsiI TTATAA 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 220
Psp1406I AACGTT 2 cut(s) 97, 246
Psp5II RGGWCCY 1 cut(s) 806
PspFI CCCAGC 1 cut(s) 685
PspN4I GGNNCC 2 cut(s) 123, 807
PspPI GGNCC 2 cut(s) 251, 806
PspPPI RGGWCCY 1 cut(s) 806
PspXI VCTCGAGB 1 cut(s) 401
PsuI RGATCY 2 cut(s) 928, 978
RsaI GTAC 4 cut(s) 497, 656, 698, 1139
RsaNI GTAC 4 cut(s) 496, 655, 697, 1138
SacI GAGCTC 1 cut(s) 220
SapI GCTCTTC 1 cut(s) 1203
SaqAI TTAA 3 cut(s) 771, 813, 1163
SatI GCNGC 1 cut(s) 1185
Sau3AI GATC 4 cut(s) 285, 928, 978, 1018
Sau96I GGNCC 2 cut(s) 251, 806
ScaI AGTACT 1 cut(s) 698
SchI GAGTC 1 cut(s) 388
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 1 cut(s) 933
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 2 cut(s) 251, 806
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 5 cut(s) 155, 182, 401, 733, 974
SmoI CTYRAG 5 cut(s) 155, 182, 401, 733, 974
SsiI CCGC 4 cut(s) 517, 589, 1185, 1219
SspI AATATT 3 cut(s) 769, 1084, 1100
SspMI CTAG 2 cut(s) 227, 1248
SstI GAGCTC 1 cut(s) 220
TaaI ACNGT 6 cut(s) 235, 427, 578, 654, 659, 1161
TaiI ACGT 3 cut(s) 100, 249, 671
TaqI TCGA 4 cut(s) 402, 447, 851, 1089
TatI WGTACW 2 cut(s) 495, 696
TauI GCSGC 1 cut(s) 1187
TfiI GAWTC 1 cut(s) 291
Tru1I TTAA 3 cut(s) 771, 813, 1163
Tru9I TTAA 3 cut(s) 771, 813, 1163
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 2 cut(s) 76, 659
Tsp45I GTSAC 2 cut(s) 76, 659
TspDTI ATGAA 6 cut(s) 39, 408, 851, 881, 1131, 1179
TspRI CASTG 1 cut(s) 240
VpaK11BI GGWCC 2 cut(s) 251, 806
XbaI TCTAGA 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XhoI CTCGAG 1 cut(s) 401
XmiI GTMKAC 2 cut(s) 192, 711
XmnI GAANNNNTTC 1 cut(s) 698
XspI CTAG 2 cut(s) 227, 1248
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.