RLG00000036096

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000140
Physical Location & Seq
Forward (+)
75720388 .. 75721635
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036096

Sequence Viewer

Length: 1017 bp
ATGCTAAGACGTAATGTTGAAGAGCTTATACTTCGCCTGTCTAACTATAAGGAGCTTTCACTGCCTCGTTCTTTATTTATTTCTGCAACACTCACGTACTTGGACATAATTGTGCCCTGTATTTTCAAAGTTCCTTCTACTGTTTGTCTATCAAGTTTAAGGACCTTGAGACTTCAATGCGTGGTGTTTTCTGATGACTGCTCAACCCAGCAGCTGTTTTCAGGTTGTCCAGTCCTTGAGGACTTGATACTAGGAGAATGCAGCTGGGGCAGTTGCAAGTTTGTGAGTATTTGTGCCCCAAAACTTTTGAGTTTGGAAATTGATGAAGACATTGAATTATGTCCCAAAGGTTCAGATGGTTGCCAGATTATGATATTTGGTGTTAGTCTCACAAACTTTTATTACTCGGGTGAATTCCGAAATCATTATTGCTTCAATAACTCATCAGTAAATGAGGCTCATATTTTTCATTGCTCTAATGAGAAGTCGAGGCATATGAGTTATGGGTTTAATAAGCTTCTTGGAGGACTATCTAGTGTGAAGACCCTAGCTACCAATTCTGATTCCCTTGAGGTGATTCAGACTCATGCTACAGAACTGCTTACCCAGATGCCCCTGTTGAATTACCTAACCACTTTGAAATTGGAAGCAGAGGAAGTAGTTCCCTGTAGCAAAGCACTATTGAGGATGCTTGGAAACTGTCCTTGCCTTCAAACTCTGATATTCTTTCAGGAGATTAACCTGTCCTCAGATGATGCTAATGATGATGGGGTGTTGGAGCCACTGCCTCCATGTTTCCTGACTAGTCTTAAAAAGATTGAAGTTCATGCATTCTATGGAGATGAGAATAATCTTTGTGCAATAAAGATTTTGCTAAAGAATGCCATGGTCTTGGAGAAGATGATCTTAACTTGCATGCACAGTTTTGTTGGAGGATCAGAGAAGAAAAAGGTTGTTAACAAACAGCTATCAGATCTCCCAAAAGGGTCAGAAAGCTGTGAAGTTGTTCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

339

Amino Acids

37.66

Weight (kDa)

5.35

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 3 - 106 7.6e-10 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 52 - 77 1.5e-06 Leucine Rich Repeat
FBD PF08387 262 - 303 4.1e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 943
AcsI RAATTY 1 cut(s) 413
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 9 cut(s) 20, 127, 176, 335, 436, 622, 640, 713, 821
AhlI ACTAGT 1 cut(s) 803
AluBI AGCT 8 cut(s) 25, 55, 214, 264, 517, 551, 967, 996
AluI AGCT 8 cut(s) 25, 55, 214, 264, 517, 551, 967, 996
Alw26I GTCTC 2 cut(s) 163, 392
AlwI GGATC 1 cut(s) 943
AlwNI CAGNNNCTG 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 406
ApeKI GCWGC 2 cut(s) 211, 261
ApoI RAATTY 1 cut(s) 413
Asp700I GAANNNNTTC 2 cut(s) 660, 1005
AspS9I GGNCC 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 422, 586
AvaI CYCGRG 1 cut(s) 406
AvaII GGWCC 1 cut(s) 162
BaeGI GKGCMC 2 cut(s) 117, 298
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbsI GAAGAC 2 cut(s) 333, 548
BbvI GCAGC 2 cut(s) 223, 273
BccI CCATC 2 cut(s) 350, 761
BcoDI GTCTC 2 cut(s) 163, 392
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 4 cut(s) 251, 534, 548, 804
BfmI CTRYAG 2 cut(s) 591, 667
BglII AGATCT 1 cut(s) 973
BisI GCNGC 2 cut(s) 212, 262
BlsI GCNGC 2 cut(s) 213, 263
Bme18I GGWCC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 780
BmsI GCATC 3 cut(s) 600, 678, 745
BpiI GAAGAC 2 cut(s) 333, 548
BpuEI CTTGAG 3 cut(s) 187, 257, 590
BsaAI YACGTR 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 885
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 469
BseDI CCNNGG 1 cut(s) 885
BseGI GGATG 1 cut(s) 693
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 1 cut(s) 230
BseSI GKGCMC 2 cut(s) 117, 298
BseXI GCAGC 2 cut(s) 223, 273
BseYI CCCAGC 2 cut(s) 207, 264
BsiHKCI CYCGRG 1 cut(s) 406
BslFI GGGAC 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 163, 392
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 3 cut(s) 263, 830, 886
BsoBI CYCGRG 1 cut(s) 406
Bsp1286I GDGCHC 2 cut(s) 117, 298
Bsp143I GATC 3 cut(s) 903, 935, 973
Bsp19I CCATGG 1 cut(s) 885
BspCNI CTCAG 1 cut(s) 761
BspLI GGNNCC 1 cut(s) 780
BspPI GGATC 1 cut(s) 943
BspQI GCTCTTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 469
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 885
BssMI GATC 3 cut(s) 903, 935, 973
BssT1I CCWWGG 1 cut(s) 885
Bst4CI ACNGT 3 cut(s) 142, 701, 923
Bst6I CTCTTC 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 917
BstDEI CTNAG 2 cut(s) 5, 748
BstDSI CCRYGG 1 cut(s) 885
BstF5I GGATG 1 cut(s) 693
BstKTI GATC 3 cut(s) 906, 938, 976
BstMAI GTCTC 2 cut(s) 163, 392
BstMBI GATC 3 cut(s) 903, 935, 973
BstMWI GCNNNNNNNGC 2 cut(s) 61, 267
BstNSI RCATGY 1 cut(s) 919
BstSFI CTRYAG 2 cut(s) 591, 667
BstSLI GKGCMC 2 cut(s) 117, 298
BstV1I GCAGC 2 cut(s) 223, 273
BstV2I GAAGAC 2 cut(s) 333, 548
BstX2I RGATCY 1 cut(s) 973
BstXI CCANNNNNNTGG 1 cut(s) 892
BstYI RGATCY 1 cut(s) 973
BtgI CCRYGG 1 cut(s) 885
BtsCI GGATG 1 cut(s) 693
BtsI GCAGTG 2 cut(s) 59, 782
BtsIMutI CAGTG 2 cut(s) 59, 782
Cac8I GCNNGC 1 cut(s) 917
CaiI CAGNNNCTG 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 97
CviAII CATG 5 cut(s) 587, 792, 827, 886, 916
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 5, 748
DpnI GATC 3 cut(s) 905, 937, 975
DpnII GATC 3 cut(s) 903, 935, 973
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 885
Eco47I GGWCC 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 885
EcoT22I ATGCAT 1 cut(s) 832
ErhI CCWWGG 1 cut(s) 885
FaeI CATG 5 cut(s) 590, 795, 830, 889, 919
FalI AAGNNNNNCTT 3 cut(s) 890, 922, 993
FaqI GGGAC 1 cut(s) 327
FatI CATG 5 cut(s) 586, 791, 826, 885, 915
FauNDI CATATG 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 212, 262
FokI GGATG 1 cut(s) 700
Fsp4HI GCNGC 2 cut(s) 212, 262
FspBI CTAG 4 cut(s) 251, 534, 548, 804
GluI GCNGC 2 cut(s) 212, 262
GsaI CCCAGC 2 cut(s) 211, 268
Hin1II CATG 5 cut(s) 590, 795, 830, 889, 919
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 3 cut(s) 563, 577, 583
HpaI GTTAAC 1 cut(s) 958
HphI GGTGA 2 cut(s) 422, 586
Hpy166II GTNNAC 1 cut(s) 958
Hpy188III TCNNGA 2 cut(s) 731, 799
Hpy8I GTNNAC 1 cut(s) 958
HpyAV CCTTC 2 cut(s) 144, 719
HpyCH4III ACNGT 3 cut(s) 142, 701, 923
HpyCH4IV ACGT 2 cut(s) 10, 95
HpyCH4V TGCA 7 cut(s) 86, 261, 276, 830, 860, 915, 919
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 267
HpyF3I CTNAG 2 cut(s) 5, 748
HpySE526I ACGT 2 cut(s) 10, 95
Hsp92II CATG 5 cut(s) 590, 795, 830, 889, 919
KspAI GTTAAC 1 cut(s) 958
Kzo9I GATC 3 cut(s) 903, 935, 973
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 2 cut(s) 52, 778
Lsp1109I GCAGC 2 cut(s) 223, 273
LweI GCATC 3 cut(s) 600, 678, 745
MaeI CTAG 4 cut(s) 251, 534, 548, 804
MaeII ACGT 2 cut(s) 10, 95
MalI GATC 3 cut(s) 905, 937, 975
MboI GATC 3 cut(s) 903, 935, 973
MboII GAAGA 5 cut(s) 32, 338, 553, 910, 955
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 2 cut(s) 117, 298
MluCI AATT 7 cut(s) 108, 318, 335, 413, 556, 622, 641
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 2 cut(s) 756, 910
Mph1103I ATGCAT 1 cut(s) 832
MroXI GAANNNNTTC 2 cut(s) 660, 1005
MseI TTAA 6 cut(s) 158, 510, 738, 810, 908, 957
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 2 cut(s) 214, 264
Mva1269I GAATGC 3 cut(s) 263, 830, 886
MwoI GCNNNNNNNGC 2 cut(s) 61, 267
NcoI CCATGG 1 cut(s) 885
NdeI CATATG 1 cut(s) 495
NdeII GATC 3 cut(s) 903, 935, 973
NlaIII CATG 5 cut(s) 590, 795, 830, 889, 919
NlaIV GGNNCC 1 cut(s) 780
NsiI ATGCAT 1 cut(s) 832
NspI RCATGY 1 cut(s) 919
PaeI GCATGC 1 cut(s) 919
PciSI GCTCTTC 1 cut(s) 15
PctI GAATGC 3 cut(s) 263, 830, 886
PdmI GAANNNNTTC 2 cut(s) 660, 1005
PfeI GAWTC 2 cut(s) 563, 577
PkrI GCNGC 2 cut(s) 213, 263
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
Ppu21I YACGTR 1 cut(s) 96
PpuMI RGGWCCY 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 162
PspFI CCCAGC 2 cut(s) 207, 264
PspN4I GGNNCC 1 cut(s) 780
PspPI GGNCC 1 cut(s) 162
PspPPI RGGWCCY 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 973
PvuII CAGCTG 2 cut(s) 214, 264
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 6 cut(s) 158, 510, 738, 810, 908, 957
SatI GCNGC 2 cut(s) 212, 262
Sau3AI GATC 3 cut(s) 903, 935, 973
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 1 cut(s) 577
SduI GDGCHC 2 cut(s) 117, 298
SfaNI GCATC 3 cut(s) 600, 678, 745
SfcI CTRYAG 2 cut(s) 591, 667
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 3 cut(s) 166, 236, 569
SmoI CTYRAG 3 cut(s) 166, 236, 569
SpeI ACTAGT 1 cut(s) 803
SphI GCATGC 1 cut(s) 919
Sse9I AATT 7 cut(s) 108, 318, 335, 413, 556, 622, 641
SspMI CTAG 4 cut(s) 251, 534, 548, 804
StyI CCWWGG 1 cut(s) 885
TaaI ACNGT 3 cut(s) 142, 701, 923
TaiI ACGT 2 cut(s) 13, 98
TaqI TCGA 1 cut(s) 488
TasI AATT 7 cut(s) 108, 318, 335, 413, 556, 622, 641
TfiI GAWTC 2 cut(s) 563, 577
Tru1I TTAA 6 cut(s) 158, 510, 738, 810, 908, 957
Tru9I TTAA 6 cut(s) 158, 510, 738, 810, 908, 957
TscAI CASTG 2 cut(s) 66, 789
TseI GCWGC 2 cut(s) 211, 261
TspDTI ATGAA 3 cut(s) 339, 458, 815
TspRI CASTG 2 cut(s) 66, 789
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 1 cut(s) 413
XceI RCATGY 1 cut(s) 919
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XmnI GAANNNNTTC 2 cut(s) 660, 1005
XspI CTAG 4 cut(s) 251, 534, 548, 804
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.