AT5G52460

NADPH adrenodoxin oxidoreductase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
21292375 .. 21293758
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52460.1

Sequence Viewer

Length: 1110 bp
ATGGCCGAACGTTGTCAAAGAATTGATGAAGAGGTTGTTGCTTCTAGAGACGAGATCAGTTCGTTGCCCGACGATTTGCTTATCCAGATTTTGTTGCTTGTACCGATCAAAGATGCAGTTGGGACAATGATATTGTCAAAACGATGGCGTTATGTCTGGACGTTGTTGCCTAAACTCGAGTACAGTGATCCTGGTGATGAATGCGAAAGCGTAGATGTTGGGAAATTAGTTGCAAATGCAGTTGATCGCTTTGTGCGCAAGCTAGAGTTAGAGCTCCACTGGACGGCAGAGCCTACCAGCTTGCCTAAGAGTCTTTACACATGCAAAACACTTGTGGAATTGACTCTTTCGGACAAGATTATAGTGGATGTTCCTTCTTCGGTTTGCCTCCCGTCACTCAACATATTACGCCTTTTTTATGTGGTGTTCAAAGATGAAAATTCTCTAGAGAGGCTTATATCAAGTTGCTCAGTTCTTGCCCGATCGAAAGTGGGCCTCGCCATCAGTGATAACCGGGACTACCGTTTCGCGAAGGTGCATAAGCTTCGCCTTGAAAAGCCACATATCGACGTTGTATGTCATACTGATGACAAGTTTCTCAAAGCTATTTCCTTGGTCACGTATCTTGTGTTACCTTTGGAAGATCCAATGGCTCTGGATTTTCGTGGCTTTACCTTCACTCGACTTGGAAAATTAGTGATATGTCCACATGGCCATCTCTGGTTGGATATAATTCCACTAATTCTCAACAACTCTCCTAAACTAAGATTTCTTGCTATCACTTCTGTAATGGATATCGACCCGGAAATCTCCCATTGTCATGGTACCAACCAAGGTACTGTTCCCAGATGCTTGTCGGCTCATTTAGATGAGGAGTTTGTGTGGCATGGATATAGAGGAAACGAAGAAGAGACACAGCTCATAAGATACATTTTTGCTAATGCAAAGTGTTTAAAGAAAGTGACAGTCACATCTATATGGGAACATTTTCAATCTTCAATCTTGAAGAGAGAGATATCAACCTTCCATCTTGAAGAGAGAGAGGTGATAGAAACGGTCTTAAAGTCTATGCCTAGAGTTTCAACAACGTCTACGCTTGTGTTTAAATGA

Protein Analysis

369

Amino Acids

42.18

Weight (kDa)

6.2

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 58 1.5e-07 F-box domain
LRR_At5g56370 PF24758 82 - 163 3.2e-07 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 132 - 157 3.5e-06 Leucine Rich Repeat
FBD PF08387 280 - 322 1.7e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 257
Acc65I GGTACC 1 cut(s) 824
AccB1I GGYRCC 1 cut(s) 824
AccI GTMKAC 1 cut(s) 1091
AccII CGCG 1 cut(s) 530
AclI AACGTT 1 cut(s) 10
AclWI GGATC 2 cut(s) 182, 638
AcoI YGGCCR 2 cut(s) 3, 712
AcsI RAATTY 1 cut(s) 439
AfaI GTAC 4 cut(s) 102, 182, 826, 838
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 7 cut(s) 430, 554, 992, 999, 1006, 1034, 1083
AjnI CCWGG 1 cut(s) 190
AjuI GAANNNNNNNTTGG 2 cut(s) 825, 857
AluBI AGCT 6 cut(s) 262, 274, 300, 544, 605, 919
AluI AGCT 6 cut(s) 262, 274, 300, 544, 605, 919
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 42, 905
AlwI GGATC 2 cut(s) 182, 638
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 3 cut(s) 3, 493, 712
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
Asp700I GAANNNNTTC 1 cut(s) 987
Asp718I GGTACC 1 cut(s) 824
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 493
AsuC2I CCSGG 2 cut(s) 515, 803
AsuHPI GGTGA 2 cut(s) 206, 1057
AvaI CYCGRG 1 cut(s) 176
BalI TGGCCA 1 cut(s) 714
BanI GGYRCC 1 cut(s) 824
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BccI CCATC 4 cut(s) 138, 509, 723, 1035
BceAI ACGGC 1 cut(s) 300
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 1 cut(s) 192
BcnI CCSGG 2 cut(s) 515, 803
BcoDI GTCTC 2 cut(s) 42, 905
BfaI CTAG 4 cut(s) 45, 263, 446, 1074
Bme1390I CCNGG 3 cut(s) 192, 515, 803
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 493
BmiI GGNNCC 1 cut(s) 826
BmrFI CCNGG 3 cut(s) 192, 515, 803
BmsI GCATC 2 cut(s) 103, 839
BpuMI CCSGG 2 cut(s) 515, 803
BsaAI YACGTR 1 cut(s) 621
BsaJI CCNNGG 2 cut(s) 612, 832
BsaXI ACNNNNNCTCC 2 cut(s) 866, 896
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 612, 832
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 887
Bsh1236I CGCG 1 cut(s) 530
Bsh1285I CGRYCG 1 cut(s) 485
BshFI GGCC 3 cut(s) 5, 495, 714
BshNI GGYRCC 1 cut(s) 824
BsiEI CGRYCG 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 514, 803
BslFI GGGAC 2 cut(s) 136, 530
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 2 cut(s) 42, 905
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 136, 530
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 3 cut(s) 5, 495, 714
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 6 cut(s) 54, 105, 187, 244, 482, 643
Bsp68I TCGCGA 1 cut(s) 530
BspANI GGCC 3 cut(s) 5, 495, 714
BspCNI CTCAG 1 cut(s) 482
BspFNI CGCG 1 cut(s) 530
BspLI GGNNCC 1 cut(s) 826
BspPI GGATC 2 cut(s) 182, 638
BspT107I GGYRCC 1 cut(s) 824
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 612, 832
BssMI GATC 6 cut(s) 54, 105, 187, 244, 482, 643
BssT1I CCWWGG 2 cut(s) 612, 832
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 5 cut(s) 185, 524, 841, 967, 1057
Bst6I CTCTTC 4 cut(s) 24, 903, 1001, 1029
BstBAI YACGTR 1 cut(s) 621
BstC8I GCNNGC 2 cut(s) 260, 302
BstDEI CTNAG 3 cut(s) 306, 469, 764
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 1 cut(s) 530
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 6 cut(s) 57, 108, 190, 247, 485, 646
BstMAI GTCTC 2 cut(s) 42, 905
BstMBI GATC 6 cut(s) 54, 105, 187, 244, 482, 643
BstMCI CGRYCG 1 cut(s) 485
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 190, 513, 801
BstUI CGCG 1 cut(s) 530
BstX2I RGATCY 1 cut(s) 643
BstXI CCANNNNNNTGG 1 cut(s) 821
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 3 cut(s) 5, 495, 714
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 3 cut(s) 190, 277, 511
BtuMI TCGCGA 1 cut(s) 530
Cac8I GCNNGC 2 cut(s) 260, 302
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 493
Csp6I GTAC 4 cut(s) 101, 181, 825, 837
CviAII CATG 4 cut(s) 321, 710, 821, 887
CviQI GTAC 4 cut(s) 101, 181, 825, 837
DdeI CTNAG 3 cut(s) 306, 469, 764
DpnI GATC 6 cut(s) 56, 107, 189, 246, 484, 645
DpnII GATC 6 cut(s) 54, 105, 187, 244, 482, 643
DraI TTTAAA 2 cut(s) 954, 1105
EaeI YGGCCR 2 cut(s) 3, 712
Eam1104I CTCTTC 4 cut(s) 24, 903, 1001, 1029
EarI CTCTTC 4 cut(s) 24, 903, 1001, 1029
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 612, 832
Eco24I GRGCYC 1 cut(s) 276
Eco32I GATATC 2 cut(s) 796, 1017
Eco53kI GAGCTC 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 190
EcoRV GATATC 2 cut(s) 796, 1017
EcoT14I CCWWGG 2 cut(s) 612, 832
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 2 cut(s) 612, 832
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 4 cut(s) 324, 713, 824, 890
FaqI GGGAC 2 cut(s) 136, 530
FatI CATG 4 cut(s) 320, 709, 820, 886
FblI GTMKAC 1 cut(s) 1091
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 1 cut(s) 276
FspBI CTAG 4 cut(s) 45, 263, 446, 1074
FspI TGCGCA 1 cut(s) 257
GlaI GCGC 1 cut(s) 257
HaeIII GGCC 3 cut(s) 5, 495, 714
HapII CCGG 2 cut(s) 514, 803
HhaI GCGC 1 cut(s) 258
Hin1II CATG 4 cut(s) 324, 713, 824, 890
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 2 cut(s) 310, 343
HpaII CCGG 2 cut(s) 514, 803
HphI GGTGA 2 cut(s) 206, 1057
Hpy166II GTNNAC 2 cut(s) 707, 1092
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 8 cut(s) 45, 85, 157, 446, 529, 656, 1003, 1031
Hpy8I GTNNAC 2 cut(s) 707, 1092
Hpy99I CGWCG 2 cut(s) 74, 572
HpyAV CCTTC 4 cut(s) 384, 526, 685, 1033
HpyCH4III ACNGT 5 cut(s) 185, 524, 841, 967, 1057
HpyCH4IV ACGT 5 cut(s) 10, 161, 570, 620, 1088
HpyCH4V TGCA 6 cut(s) 116, 233, 239, 324, 538, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 3 cut(s) 306, 469, 764
HpySE526I ACGT 5 cut(s) 10, 161, 570, 620, 1088
Hsp92II CATG 4 cut(s) 324, 713, 824, 890
HspAI GCGC 1 cut(s) 256
KpnI GGTACC 1 cut(s) 828
Kzo9I GATC 6 cut(s) 54, 105, 187, 244, 482, 643
LmnI GCTCC 1 cut(s) 279
LweI GCATC 2 cut(s) 103, 839
MaeI CTAG 4 cut(s) 45, 263, 446, 1074
MaeII ACGT 5 cut(s) 10, 161, 570, 620, 1088
MaeIII GTNAC 5 cut(s) 393, 616, 630, 961, 967
MalI GATC 6 cut(s) 56, 107, 189, 246, 484, 645
MboI GATC 6 cut(s) 54, 105, 187, 244, 482, 643
MboII GAAGA 8 cut(s) 41, 369, 653, 917, 920, 987, 1018, 1046
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 1 cut(s) 276
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 7 cut(s) 21, 224, 338, 439, 692, 732, 741
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 2 cut(s) 319, 337
MmeI TCCRAC 1 cut(s) 705
MnlI CCTC 7 cut(s) 25, 398, 444, 506, 865, 890, 1036
Mox20I TGGCCA 1 cut(s) 714
MroXI GAANNNNTTC 1 cut(s) 987
MscI TGGCCA 1 cut(s) 714
MseI TTAA 3 cut(s) 953, 1061, 1104
MslI CAYNNNNRTG 4 cut(s) 585, 819, 867, 976
Msp20I TGGCCA 1 cut(s) 714
MspI CCGG 2 cut(s) 514, 803
MspR9I CCNGG 3 cut(s) 192, 515, 803
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 530
MwoI GCNNNNNNNGC 1 cut(s) 255
NciI CCSGG 2 cut(s) 515, 803
NdeII GATC 6 cut(s) 54, 105, 187, 244, 482, 643
NlaIII CATG 4 cut(s) 324, 713, 824, 890
NlaIV GGNNCC 1 cut(s) 826
NmuCI GTSAC 4 cut(s) 393, 616, 961, 967
NruI TCGCGA 1 cut(s) 530
NsbI TGCGCA 1 cut(s) 257
NspI RCATGY 1 cut(s) 324
PaeR7I CTCGAG 1 cut(s) 176
PctI GAATGC 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 987
Ple19I CGATCG 1 cut(s) 485
PleI GAGTC 2 cut(s) 318, 337
PpsI GAGTC 2 cut(s) 318, 337
Ppu21I YACGTR 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 276
Psp1406I AACGTT 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 826
PspPI GGNCC 1 cut(s) 493
PspXI VCTCGAGB 1 cut(s) 176
PsuI RGATCY 1 cut(s) 643
PvuI CGATCG 1 cut(s) 485
RruI TCGCGA 1 cut(s) 530
RsaI GTAC 4 cut(s) 102, 182, 826, 838
RsaNI GTAC 4 cut(s) 101, 181, 825, 837
RseI CAYNNNNRTG 4 cut(s) 585, 819, 867, 976
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 953, 1061, 1104
Sau3AI GATC 6 cut(s) 54, 105, 187, 244, 482, 643
Sau96I GGNCC 1 cut(s) 493
SchI GAGTC 2 cut(s) 319, 337
ScrFI CCNGG 3 cut(s) 192, 515, 803
SduI GDGCHC 1 cut(s) 276
SfaNI GCATC 2 cut(s) 103, 839
Sfr274I CTCGAG 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 4 cut(s) 585, 819, 867, 976
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 7 cut(s) 21, 224, 338, 439, 692, 732, 741
SspMI CTAG 4 cut(s) 45, 263, 446, 1074
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 3 cut(s) 190, 513, 801
StyI CCWWGG 2 cut(s) 612, 832
TaaI ACNGT 5 cut(s) 185, 524, 841, 967, 1057
TaiI ACGT 5 cut(s) 13, 164, 573, 623, 1091
TaqI TCGA 5 cut(s) 177, 485, 567, 682, 798
TasI AATT 7 cut(s) 21, 224, 338, 439, 692, 732, 741
TatI WGTACW 1 cut(s) 180
Tru1I TTAA 3 cut(s) 953, 1061, 1104
Tru9I TTAA 3 cut(s) 953, 1061, 1104
TscAI CASTG 3 cut(s) 190, 284, 511
TseFI GTSAC 4 cut(s) 393, 616, 961, 967
Tsp45I GTSAC 4 cut(s) 393, 616, 961, 967
TspDTI ATGAA 3 cut(s) 42, 213, 450
TspRI CASTG 3 cut(s) 190, 284, 511
XapI RAATTY 1 cut(s) 439
XbaI TCTAGA 2 cut(s) 44, 445
XceI RCATGY 1 cut(s) 324
XhoI CTCGAG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 1091
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 4 cut(s) 45, 263, 446, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.