AT4G09920

microtubule motor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000140
Physical Location & Seq
Forward (+)
6224344 .. 6226116
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09920.4

Sequence Viewer

Length: 951 bp
ATGGACAGAATCATTGGGTTACCTGATGAAGTACTGGTTAAGATACTGTCGTTTGTTCCGACTAAAGTTGCTGTGTCAACGAGCATTTTGTCGAAACGATGGGAGTTTCTTTGGATGTGGTTGACGAAACTTAAGTTTGGTAGTAAACGTTATTCAGAGTCTGAATTCAAGAGGTTACAGTGTTTTCTTGATAGGAATCTGCCATTACATAGAGCTCCCGTTATAGAAAGTTTCCGTCTTGTGTTAAGTGATTCGCATTTTAAACCTGAGGATATCAGAATGTGGGTTGTAGTAGCAGTTTCTCGCTACATACGTGAGCTGAAGATTTATAGTTCTCACTATGGGGAGAAGCAAAACATATTGCCAAGTAGCTTATATACCTGCAAATCGCTCGTGATCTTGAAACTCGATGGCGGGGTTCTCTTGGATGTTCCTCGAATGGTTTGTCTTCCCTCTTTAAAAACTTTGGAACTGAAAGGTGTGAGATACTTCAAGCAAGGATCTCTTCAGCGGCTTCTATGTAATTGCCCTGTTCTTGAAGATCTATTCGTGTTGTTACTTCGTTGTGACGACATAGGAATGTTTATTGTTATTGTCCCATCTTTGCAACGTTTGTCACTCTATTTAAGTCCTCGTTGTAATTTAGAAGGGTTTGTCATAGTCTTAGATACTCCTTTAGAATATTTCAAACTTGTGGATCGTAATTATGATCGTCACCCATATATGATTGAGAATATGCCTAAGCTGACGTCAGCATATGTTGAGGTTATATCCGCTGATCTTAAGAGTCTTGTCGAATCAATCACTTCTGTCAAGTACCTAACAATATTCTCAGAGAATTATGACGATTTTGTGTTTCCCTGGAATCAACCTAGTACTGTTCCTAAATGCTTTTGTCCAGTCTACAAAAGTTCACCAGTCTACAAAAGTTCACCTGGACAAAATACTTAG

Protein Analysis

316

Amino Acids

36.58

Weight (kDa)

8.93

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 42 2.6e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 84 - 279 9e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 94 - 234 2.5e-12 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 152 - 177 7.8e-06 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 752
Acc36I ACCTGC 1 cut(s) 389
AccI GTMKAC 2 cut(s) 903, 921
AciI CCGC 3 cut(s) 414, 511, 774
AclI AACGTT 2 cut(s) 148, 610
AclWI GGATC 2 cut(s) 508, 705
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 2 cut(s) 341, 491
AcyI GRCGYC 1 cut(s) 749
AfaI GTAC 3 cut(s) 33, 818, 877
AflII CTTAAG 2 cut(s) 131, 782
AgsI TTSAA 5 cut(s) 169, 403, 493, 539, 688
AjnI CCWGG 2 cut(s) 860, 934
AluBI AGCT 4 cut(s) 215, 319, 372, 745
AluI AGCT 4 cut(s) 215, 319, 372, 745
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 2 cut(s) 508, 705
AlwNI CAGNNNCTG 1 cut(s) 161
ApoI RAATTY 1 cut(s) 164
ArsI GACNNNNNNTTYG 2 cut(s) 430, 462
AsuHPI GGTGA 3 cut(s) 707, 906, 924
AxyI CCTNAGG 1 cut(s) 267
BaeI ACNNNNGTAYC 2 cut(s) 35, 68
BanII GRGCYC 1 cut(s) 217
BauI CACGAG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 3 cut(s) 93, 404, 607
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BciT130I CCWGG 2 cut(s) 862, 936
BfaI CTAG 1 cut(s) 873
BfrI CTTAAG 2 cut(s) 131, 782
BfuAI ACCTGC 1 cut(s) 389
BglII AGATCT 1 cut(s) 541
BisI GCNGC 1 cut(s) 512
BlsI GCNGC 1 cut(s) 513
BmcAI AGTACT 2 cut(s) 33, 877
Bme1390I CCNGG 2 cut(s) 862, 936
BmrFI CCNGG 2 cut(s) 862, 936
BpiI GAAGAC 1 cut(s) 440
Bpu10I CCTNAGC 1 cut(s) 741
BsaAI YACGTR 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 749
BsaJI CCNNGG 1 cut(s) 860
Bse1I ACTGG 3 cut(s) 39, 899, 917
Bse21I CCTNAGG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 2 cut(s) 862, 936
BseDI CCNNGG 1 cut(s) 860
BseGI GGATG 2 cut(s) 120, 433
BseJI GATNNNNATC 1 cut(s) 195
BseMII CTCAG 2 cut(s) 258, 846
BseNI ACTGG 3 cut(s) 39, 899, 917
BsiHKAI GWGCWC 1 cut(s) 217
BslFI GGGAC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 581
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 6 cut(s) 396, 500, 541, 697, 709, 778
BspACI CCGC 3 cut(s) 414, 511, 774
BspCNI CTCAG 2 cut(s) 259, 845
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 2 cut(s) 508, 705
BspTI CTTAAG 2 cut(s) 131, 782
BsrI ACTGG 3 cut(s) 39, 899, 917
BssECI CCNNGG 1 cut(s) 860
BssMI GATC 6 cut(s) 396, 500, 541, 697, 709, 778
BssNI GRCGYC 1 cut(s) 749
BssSI CACGAG 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 2 cut(s) 862, 936
Bst4CI ACNGT 3 cut(s) 48, 180, 880
Bst6I CTCTTC 1 cut(s) 510
BstACI GRCGYC 1 cut(s) 749
BstAFI CTTAAG 2 cut(s) 131, 782
BstBAI YACGTR 1 cut(s) 314
BstDEI CTNAG 5 cut(s) 267, 664, 741, 832, 948
BstEII GGTNACC 1 cut(s) 18
BstF5I GGATG 2 cut(s) 120, 433
BstKTI GATC 6 cut(s) 399, 503, 544, 700, 712, 781
BstMBI GATC 6 cut(s) 396, 500, 541, 697, 709, 778
BstNI CCWGG 2 cut(s) 862, 936
BstPI GGTNACC 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 860, 934
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 2 cut(s) 500, 541
BstYI RGATCY 2 cut(s) 500, 541
Bsu36I CCTNAGG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 120, 433
BtsIMutI CAGTG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 389
CaiI CAGNNNCTG 1 cut(s) 161
Csp6I GTAC 3 cut(s) 32, 817, 876
CviJI RGCY 5 cut(s) 215, 319, 372, 514, 745
CviKI_1 RGCY 5 cut(s) 215, 319, 372, 514, 745
CviQI GTAC 3 cut(s) 32, 817, 876
DdeI CTNAG 5 cut(s) 267, 664, 741, 832, 948
DpnI GATC 6 cut(s) 398, 502, 543, 699, 711, 780
DpnII GATC 6 cut(s) 396, 500, 541, 697, 709, 778
DraI TTTAAA 2 cut(s) 262, 459
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 2 cut(s) 341, 491
Eco81I CCTNAGG 1 cut(s) 267
Eco91I GGTNACC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 860, 934
EcoRV GATATC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 217
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 1 cut(s) 581
FauI CCCGC 1 cut(s) 407
FauNDI CATATG 1 cut(s) 757
FblI GTMKAC 2 cut(s) 903, 921
Fnu4HI GCNGC 1 cut(s) 512
FokI GGATG 2 cut(s) 127, 440
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 512
FspBI CTAG 1 cut(s) 873
GluI GCNGC 1 cut(s) 512
Hin1I GRCGYC 1 cut(s) 749
HincII GTYRAC 2 cut(s) 78, 123
HindII GTYRAC 2 cut(s) 78, 123
HinfI GANTC 7 cut(s) 9, 158, 196, 251, 787, 797, 865
HphI GGTGA 3 cut(s) 707, 906, 924
Hpy166II GTNNAC 7 cut(s) 78, 123, 146, 904, 914, 922, 932
Hpy188I TCNGA 5 cut(s) 60, 157, 163, 278, 835
Hpy188III TCNNGA 5 cut(s) 169, 188, 394, 400, 536
Hpy8I GTNNAC 7 cut(s) 78, 123, 146, 904, 914, 922, 932
HpyAV CCTTC 1 cut(s) 641
HpyCH4III ACNGT 3 cut(s) 48, 180, 880
HpyCH4IV ACGT 4 cut(s) 148, 313, 610, 749
HpyCH4V TGCA 2 cut(s) 384, 607
HpyF3I CTNAG 5 cut(s) 267, 664, 741, 832, 948
HpySE526I ACGT 4 cut(s) 148, 313, 610, 749
Hsp92I GRCGYC 1 cut(s) 749
Kzo9I GATC 6 cut(s) 396, 500, 541, 697, 709, 778
LmnI GCTCC 1 cut(s) 220
MaeI CTAG 1 cut(s) 873
MaeII ACGT 4 cut(s) 148, 313, 610, 749
MaeIII GTNAC 6 cut(s) 18, 174, 555, 566, 615, 713
MalI GATC 6 cut(s) 398, 502, 543, 699, 711, 780
MboI GATC 6 cut(s) 396, 500, 541, 697, 709, 778
MboII GAAGA 4 cut(s) 334, 440, 497, 551
MflI RGATCY 2 cut(s) 500, 541
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 5 cut(s) 164, 523, 640, 703, 838
MlyI GAGTC 2 cut(s) 167, 796
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 6 cut(s) 165, 262, 444, 463, 642, 757
MseI TTAA 7 cut(s) 39, 132, 245, 261, 458, 626, 783
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 2 cut(s) 511, 776
MspCI CTTAAG 2 cut(s) 131, 782
MspR9I CCNGG 2 cut(s) 862, 936
MvaI CCWGG 2 cut(s) 862, 936
NdeI CATATG 1 cut(s) 757
NdeII GATC 6 cut(s) 396, 500, 541, 697, 709, 778
NmuCI GTSAC 3 cut(s) 566, 615, 713
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 310
PfeI GAWTC 5 cut(s) 9, 196, 251, 797, 865
PkrI GCNGC 1 cut(s) 513
PleI GAGTC 2 cut(s) 166, 795
PpsI GAGTC 2 cut(s) 166, 795
Ppu21I YACGTR 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 217
Psp1406I AACGTT 2 cut(s) 148, 610
Psp6I CCWGG 2 cut(s) 860, 934
PspEI GGTNACC 1 cut(s) 18
PspGI CCWGG 2 cut(s) 860, 934
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 2 cut(s) 500, 541
RsaI GTAC 3 cut(s) 33, 818, 877
RsaNI GTAC 3 cut(s) 32, 817, 876
RseI CAYNNNNRTG 1 cut(s) 578
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 7 cut(s) 39, 132, 245, 261, 458, 626, 783
SatI GCNGC 1 cut(s) 512
Sau3AI GATC 6 cut(s) 396, 500, 541, 697, 709, 778
ScaI AGTACT 2 cut(s) 33, 877
SchI GAGTC 2 cut(s) 167, 796
ScrFI CCNGG 2 cut(s) 862, 936
SduI GDGCHC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 2 cut(s) 131, 782
SmoI CTYRAG 2 cut(s) 131, 782
Sse9I AATT 5 cut(s) 164, 523, 640, 703, 838
SsiI CCGC 3 cut(s) 414, 511, 774
SspI AATATT 2 cut(s) 683, 828
SspMI CTAG 1 cut(s) 873
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 860, 934
TaaI ACNGT 3 cut(s) 48, 180, 880
TaiI ACGT 4 cut(s) 151, 316, 613, 752
TaqI TCGA 4 cut(s) 92, 408, 436, 795
TasI AATT 5 cut(s) 164, 523, 640, 703, 838
TatI WGTACW 2 cut(s) 31, 875
TauI GCSGC 1 cut(s) 514
TfiI GAWTC 5 cut(s) 9, 196, 251, 797, 865
Tru1I TTAA 7 cut(s) 39, 132, 245, 261, 458, 626, 783
Tru9I TTAA 7 cut(s) 39, 132, 245, 261, 458, 626, 783
TscAI CASTG 1 cut(s) 185
TseFI GTSAC 3 cut(s) 566, 615, 713
Tsp45I GTSAC 3 cut(s) 566, 615, 713
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 185
Vha464I CTTAAG 2 cut(s) 131, 782
XapI RAATTY 1 cut(s) 164
XmiI GTMKAC 2 cut(s) 903, 921
XspI CTAG 1 cut(s) 873
ZraI GACGTC 1 cut(s) 750
ZrmI AGTACT 2 cut(s) 33, 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.