Rmu_sc0004212.1_g000009

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004212.1
OG0000140
Physical Location & Seq
Forward (+)
15848 .. 16990
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004212.1_g000009.1.cds

Sequence Viewer

Length: 720 bp
atgccctgtgttttcaaggttcctcgtactatttgcttctcaagtctaaagtgcttgagtctcaagtctgtggtgttttctgatgactacttaacccatcagttgttttctggtttcccagtcctggaagatctatctctaacaaattgcaattggacgaatattatcaagtttattagtatttatactcccaagcttttgatcttgaccatgatcgaaggaggtgtggaagttgcgagagcttcaaaatcttctgatggatgtcagatgatggtggttctaaatgatgcaccagaacttcttgcccagctgcctttgttcaatgatctaatcactttggaatttgaaggaagtgtaaacattggtagcaaaccattcttgtcgatgctccacaactgtccttgtcttcaaactttgatattccttgaggggattgaggagtccttaaatgttgctaaagatggagttttggagcctttgcctccatgcttcctctcacgtctaaaagagattgaagtctatgaattttatggagatgaggatcacatacatgcattgaaagttttgctaaagaatgcaatggttttggagaatatgaccataacttggggcacggattttgaagtggagctagagaggaaaagtgatgttcataaacagttattcaatctccctagagtatcaaaaagctgtgaagttgttcttgaacttctggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

239

Amino Acids

26.92

Weight (kDa)

4.84

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 606
AclWI GGATC 1 cut(s) 549
AcsI RAATTY 2 cut(s) 341, 524
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 124, 606
AjiI CACGTC 1 cut(s) 500
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 5 cut(s) 196, 242, 310, 631, 690
AluI AGCT 5 cut(s) 196, 242, 310, 631, 690
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 2 cut(s) 341, 524
Asp700I GAANNNNTTC 1 cut(s) 699
BaeGI GKGCMC 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 297
BccI CCATC 4 cut(s) 105, 251, 265, 455
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 2 cut(s) 632, 675
BglII AGATCT 1 cut(s) 130
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
Bme1390I CCNGG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 500
BmiI GGNNCC 2 cut(s) 21, 474
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 277, 375
BmuI ACTGGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 398
BpuEI CTTGAG 4 cut(s) 25, 47, 76, 446
BsaBI GATNNNNATC 1 cut(s) 540
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 606
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 585
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 266
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 124, 606
BseMI GCAATG 1 cut(s) 585
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 452
BseSI GKGCMC 1 cut(s) 614
BseXI GCAGC 1 cut(s) 297
BseYI CCCAGC 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 124, 606
BsmAI GTCTC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 580
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 5 cut(s) 130, 201, 213, 325, 541
BspLI GGNNCC 2 cut(s) 21, 474
BspPI GGATC 1 cut(s) 549
BsrDI GCAATG 1 cut(s) 585
BsrI ACTGG 1 cut(s) 119
BssMI GATC 5 cut(s) 130, 201, 213, 325, 541
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 398, 660
BstF5I GGATG 1 cut(s) 266
BstKTI GATC 5 cut(s) 133, 204, 216, 328, 544
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 5 cut(s) 130, 201, 213, 325, 541
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 614
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 398
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 27
CviAII CATG 3 cut(s) 211, 486, 551
CviJI RGCY 6 cut(s) 196, 242, 310, 475, 631, 690
CviKI_1 RGCY 6 cut(s) 196, 242, 310, 475, 631, 690
CviQI GTAC 1 cut(s) 27
DpnI GATC 5 cut(s) 132, 203, 215, 327, 543
DpnII GATC 5 cut(s) 130, 201, 213, 325, 541
EcoRII CCWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 556
FaeI CATG 3 cut(s) 214, 489, 554
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FatI CATG 3 cut(s) 210, 485, 550
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 2 cut(s) 632, 675
GluI GCNGC 1 cut(s) 311
GsaI CCCAGC 1 cut(s) 310
Hin1II CATG 3 cut(s) 214, 489, 554
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 58, 440
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 82, 256, 267
Hpy188III TCNNGA 2 cut(s) 205, 704
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 2 cut(s) 212, 341
HpyCH4III ACNGT 2 cut(s) 398, 660
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 4 cut(s) 150, 290, 554, 578
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 3 cut(s) 214, 489, 554
Kzo9I GATC 5 cut(s) 130, 201, 213, 325, 541
LmnI GCTCC 3 cut(s) 393, 472, 628
LpnPI CCDG 8 cut(s) 19, 96, 110, 132, 137, 306, 320, 698
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 277, 375
MaeI CTAG 2 cut(s) 632, 675
MaeII ACGT 1 cut(s) 499
MalI GATC 5 cut(s) 132, 203, 215, 327, 543
MboI GATC 5 cut(s) 130, 201, 213, 325, 541
MboII GAAGA 3 cut(s) 140, 243, 398
MfeI CAATTG 1 cut(s) 151
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 4 cut(s) 145, 151, 341, 524
MlyI GAGTC 2 cut(s) 67, 449
MnlI CCTC 8 cut(s) 33, 215, 421, 430, 492, 503, 532, 630
Mph1103I ATGCAT 1 cut(s) 556
MroXI GAANNNNTTC 1 cut(s) 699
MseI TTAA 2 cut(s) 92, 446
MslI CAYNNNNRTG 1 cut(s) 549
MspA1I CMGCKG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 580
MvaI CCWGG 1 cut(s) 125
NdeII GATC 5 cut(s) 130, 201, 213, 325, 541
NlaIII CATG 3 cut(s) 214, 489, 554
NlaIV GGNNCC 2 cut(s) 21, 474
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 1 cut(s) 554
PctI GAATGC 1 cut(s) 580
PdmI GAANNNNTTC 1 cut(s) 699
PflMI CCANNNNNTGG 1 cut(s) 606
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 2 cut(s) 66, 448
PpsI GAGTC 2 cut(s) 66, 448
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 21, 474
PsuI RGATCY 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 549
SaqAI TTAA 2 cut(s) 92, 446
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 5 cut(s) 130, 201, 213, 325, 541
SchI GAGTC 2 cut(s) 67, 449
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 614
SetI ASST 8 cut(s) 21, 198, 226, 244, 312, 502, 633, 692
SfaNI GCATC 2 cut(s) 277, 375
SmiMI CAYNNNNRTG 1 cut(s) 549
SmlI CTYRAG 4 cut(s) 40, 55, 62, 425
SmoI CTYRAG 4 cut(s) 40, 55, 62, 425
Sse9I AATT 4 cut(s) 145, 151, 341, 524
SspI AATATT 1 cut(s) 163
SspMI CTAG 2 cut(s) 632, 675
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 398, 660
TaiI ACGT 1 cut(s) 502
TaqI TCGA 2 cut(s) 216, 383
TasI AATT 4 cut(s) 145, 151, 341, 524
Tru1I TTAA 2 cut(s) 92, 446
Tru9I TTAA 2 cut(s) 92, 446
TseI GCWGC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 537, 641
TspGWI ACGGA 1 cut(s) 629
Van91I CCANNNNNTGG 1 cut(s) 606
XapI RAATTY 2 cut(s) 341, 524
XceI RCATGY 1 cut(s) 554
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 2 cut(s) 632, 675
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.