AT5G56390

FBD-associated F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000140
Physical Location & Seq
Reverse (-)
22842790 .. 22844273
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56390.1

Sequence Viewer

Length: 1287 bp
ATGGACAAGATAAGTCAGTTGCATGATGAGCTTCTTTTGGGAATATTGTCGTTACTTCCTAATGCTAAAGATGTTGTGGCCACAATGGTTTTGTCAAAACGGTGGCGATATCTTTGGATGATGGTTCCAAGTCTTGTGTACGATGATAGCTATCAAGATATTGATTATGGAAGGTTTTCGCGGTTTGTAGACAGGTCTTTGGCCTTGCACAAGGCTCCCGTCATAGATACTTTGCATTTCAAACTTGGTCATATCTGTGGTAGTGGAGATACTCTGATTGGAGCTGCAGAGAAATGTTGTGTGCGTAAACTGATTATCAAGATTGATGACACTTCTTCTCGTAGTAGTAAAACTGATCAAGTCATTCTTCCGATGAGCTTGTGTAGTGGGGTTCATATAATGCTTGCGGACCTGAAACTACAAAACGTGGTTCTGGTGGACGTTTCTACTCCAGTTTCTTTCCCATCCTTAAAAAGGTTAAGGCTTAAATCCGTGAAGTACCCAGGTAATGAATTTGTCAACAATCTTATATCGAGTTGTCCTGTTCTTGAAGACTTGGTTGTGAAGCAATGTTCAGATGACAATGTCACCATTTTGACCGTTAGAGTGCCATCTCTAAAGCGTTTATCCTTAATACAAAGAGCTGAACTTGAAATCGATGTTCCTCATGATTTTGTGATAGATACTCCTTCTTTGGAACACTTAAAGATAGTTGATTATACGTATGGGTCTCGTGTCGTTAAGAGTACTATGAATAGGATTATCACCGCAAGTATGGACGTTTTTTCTCCCCAAACTAAGGAGATTTTGGGCTCTCTAACTTCAACCAAACGTCTTTTTCTCTGCTTACCAACTTCAAAGGATGCGTATCCTGTTGGTAATATATTTGGCTCTCTTATACATTTAACTATATGCACATGTGAGACAGAATGGTTGAATGTACTTATACGTGTGCTCAGAGATTCCCCTAATTTAAAAACACTCAAAATTGAACAGTATCATAACCTTCGGGATGAAGACCCACGCCCGTGCTGGAACGAAACGAGCTTGGTGCCTGAATATCTGTTACCTAGTCTTGAAACCTTTGAATGGGTAGATTATGAAGGAACAAAAACAGAGAAACAAGTCGTAGCATTCATCTTGAGAATTGCAAGCTGTTTAAAGCAGGCAACTATTGTCTCCTTTAAATACATTGACCATGACAAGAAACTTGAGATGCTCAATGATTTTCCCGTATCATCGAGGCGTTCCCCAGCATGTATGCTTGCATTCTCCTGGAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

428

Amino Acids

48.56

Weight (kDa)

7.11

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 117 - 334 1.1e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 120 - 257 1.2e-10 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 156 - 181 8.2e-07 Leucine Rich Repeat
FBD PF08387 349 - 392 1.5e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1051
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 181
AciI CCGC 3 cut(s) 181, 407, 768
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 512
AfaI GTAC 4 cut(s) 140, 500, 748, 942
AfiI CCNNNNNNNGG 3 cut(s) 474, 799, 1089
AflIII ACRYGT 2 cut(s) 917, 949
AgsI TTSAA 9 cut(s) 241, 551, 653, 825, 858, 937, 992, 1079, 1088
AjnI CCWGG 2 cut(s) 502, 1274
AleI CACNNNNGTG 1 cut(s) 1027
AluBI AGCT 7 cut(s) 31, 150, 284, 378, 644, 1047, 1155
AluI AGCT 7 cut(s) 31, 150, 284, 378, 644, 1047, 1155
Alw21I GWGCWC 1 cut(s) 957
Alw26I GTCTC 3 cut(s) 735, 917, 1183
AoxI GGCC 2 cut(s) 78, 201
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 512
Asp700I GAANNNNTTC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 2 cut(s) 580, 757
AvaII GGWCC 1 cut(s) 409
BalI TGGCCA 1 cut(s) 80
BanI GGYRCC 1 cut(s) 1051
BanII GRGCYC 1 cut(s) 815
BauI CACGAG 1 cut(s) 732
BbsI GAAGAC 2 cut(s) 558, 1023
Bbv12I GWGCWC 1 cut(s) 957
BbvI GCAGC 1 cut(s) 271
BccI CCATC 3 cut(s) 115, 472, 619
BcgI CGANNNNNNTGC 2 cut(s) 1033, 1067
BciT130I CCWGG 2 cut(s) 504, 1276
BciVI GTATCC 1 cut(s) 879
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 3 cut(s) 735, 917, 1183
BfaI CTAG 1 cut(s) 1071
BfmI CTRYAG 1 cut(s) 285
BfuI GTATCC 1 cut(s) 879
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BmcAI AGTACT 1 cut(s) 748
Bme1390I CCNGG 2 cut(s) 504, 1276
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 3 cut(s) 126, 216, 1053
BmrFI CCNGG 2 cut(s) 504, 1276
BmsI GCATC 2 cut(s) 853, 1206
BpiI GAAGAC 2 cut(s) 558, 1023
BpmI CTGGAG 1 cut(s) 435
BpuEI CTTGAG 2 cut(s) 1162, 1232
Bsa29I ATCGAT 1 cut(s) 657
BsaAI YACGTR 2 cut(s) 723, 950
BsaBI GATNNNNATC 2 cut(s) 150, 867
BsaI GGTCTC 1 cut(s) 735
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 3 cut(s) 474, 799, 1089
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 575
Bse8I GATNNNNATC 2 cut(s) 150, 867
BseBI CCWGG 2 cut(s) 504, 1276
BseCI ATCGAT 1 cut(s) 657
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 4 cut(s) 123, 464, 868, 1018
BseJI GATNNNNATC 2 cut(s) 150, 867
BseLI CCNNNNNNNGG 3 cut(s) 474, 799, 1089
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 970
BseNI ACTGG 1 cut(s) 452
BseXI GCAGC 1 cut(s) 271
BseYI CCCAGC 1 cut(s) 1252
Bsh1236I CGCG 1 cut(s) 181
BshFI GGCC 2 cut(s) 80, 203
BshNI GGYRCC 1 cut(s) 1051
BshVI ATCGAT 1 cut(s) 657
BsiHKAI GWGCWC 1 cut(s) 957
BslI CCNNNNNNNGG 3 cut(s) 474, 799, 1089
BsmAI GTCTC 3 cut(s) 735, 917, 1183
BsmI GAATGC 2 cut(s) 1133, 1268
BsnI GGCC 2 cut(s) 80, 203
Bso31I GGTCTC 1 cut(s) 735
Bsp1286I GDGCHC 2 cut(s) 815, 957
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 3 cut(s) 181, 407, 768
BspANI GGCC 2 cut(s) 80, 203
BspCNI CTCAG 1 cut(s) 969
BspDI ATCGAT 1 cut(s) 657
BspFNI CGCG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 3 cut(s) 126, 216, 1053
BspMAI CTGCAG 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 1051
BspTNI GGTCTC 1 cut(s) 735
BsrDI GCAATG 1 cut(s) 575
BsrI ACTGG 1 cut(s) 452
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 1 cut(s) 355
BssSI CACGAG 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 504, 1276
Bst4CI ACNGT 3 cut(s) 102, 601, 996
BstBAI YACGTR 2 cut(s) 723, 950
BstC8I GCNNGC 4 cut(s) 405, 1153, 1167, 1266
BstDEI CTNAG 2 cut(s) 798, 956
BstENI CCTNNNNNAGG 1 cut(s) 472
BstF5I GGATG 4 cut(s) 123, 464, 868, 1018
BstFNI CGCG 1 cut(s) 181
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 3 cut(s) 735, 917, 1183
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 2 cut(s) 504, 1276
BstNSI RCATGY 2 cut(s) 921, 1260
BstSCI CCNGG 2 cut(s) 502, 1274
BstSFI CTRYAG 1 cut(s) 285
BstSNI TACGTA 1 cut(s) 723
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 2 cut(s) 558, 1023
Bsu15I ATCGAT 1 cut(s) 657
BsuI GTATCC 1 cut(s) 879
BsuRI GGCC 2 cut(s) 80, 203
BsuTUI ATCGAT 1 cut(s) 657
BtsCI GGATG 4 cut(s) 123, 464, 868, 1018
Cac8I GCNNGC 4 cut(s) 405, 1153, 1167, 1266
CciI TCATGA 1 cut(s) 667
Cfr13I GGNCC 1 cut(s) 409
ClaI ATCGAT 1 cut(s) 657
Csp6I GTAC 4 cut(s) 139, 499, 747, 941
CviAII CATG 5 cut(s) 23, 668, 918, 1199, 1257
CviQI GTAC 4 cut(s) 139, 499, 747, 941
DdeI CTNAG 2 cut(s) 798, 956
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DraI TTTAAA 3 cut(s) 975, 1161, 1186
EaeI YGGCCR 1 cut(s) 78
Eco105I TACGTA 1 cut(s) 723
Eco24I GRGCYC 1 cut(s) 815
Eco31I GGTCTC 1 cut(s) 735
Eco32I GATATC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 409
EcoNI CCTNNNNNAGG 1 cut(s) 472
EcoRII CCWGG 2 cut(s) 502, 1274
EcoRV GATATC 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 815
FaeI CATG 5 cut(s) 26, 671, 921, 1202, 1260
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 5 cut(s) 22, 667, 917, 1198, 1256
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 4 cut(s) 130, 451, 875, 1025
FriOI GRGCYC 1 cut(s) 815
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 1071
GluI GCNGC 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 1256
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 2 cut(s) 80, 203
Hin1II CATG 5 cut(s) 26, 671, 921, 1202, 1260
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 2 cut(s) 962, 1279
HphI GGTGA 2 cut(s) 580, 757
Hpy166II GTNNAC 5 cut(s) 139, 190, 308, 439, 520
Hpy188I TCNGA 4 cut(s) 276, 372, 577, 959
Hpy188III TCNNGA 7 cut(s) 155, 319, 548, 668, 1010, 1076, 1141
Hpy8I GTNNAC 5 cut(s) 139, 190, 308, 439, 520
HpyAV CCTTC 4 cut(s) 165, 699, 1016, 1097
HpyCH4III ACNGT 3 cut(s) 102, 601, 996
HpyCH4IV ACGT 6 cut(s) 426, 441, 722, 780, 832, 949
HpyCH4V TGCA 7 cut(s) 22, 208, 235, 287, 915, 1151, 1268
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 2 cut(s) 798, 956
HpySE526I ACGT 6 cut(s) 426, 441, 722, 780, 832, 949
Hsp92II CATG 5 cut(s) 26, 671, 921, 1202, 1260
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 220, 281
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 2 cut(s) 853, 1206
MaeI CTAG 1 cut(s) 1071
MaeII ACGT 6 cut(s) 426, 441, 722, 780, 832, 949
MaeIII GTNAC 3 cut(s) 51, 586, 1065
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 4 cut(s) 327, 359, 563, 1028
MhlI GDGCHC 2 cut(s) 815, 957
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 4 cut(s) 512, 970, 987, 1146
MluNI TGGCCA 1 cut(s) 80
MnlI CCTC 2 cut(s) 675, 1236
Mox20I TGGCCA 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 175
MscI TGGCCA 1 cut(s) 80
MslI CAYNNNNRTG 2 cut(s) 255, 1027
Msp20I TGGCCA 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 504, 1276
Mva1269I GAATGC 2 cut(s) 1133, 1268
MvaI CCWGG 2 cut(s) 504, 1276
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 28
NdeII GATC 1 cut(s) 355
NlaIII CATG 5 cut(s) 26, 671, 921, 1202, 1260
NlaIV GGNNCC 3 cut(s) 126, 216, 1053
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 2 cut(s) 921, 1260
OliI CACNNNNGTG 1 cut(s) 1027
PagI TCATGA 1 cut(s) 667
PciI ACATGT 1 cut(s) 917
PctI GAATGC 2 cut(s) 1133, 1268
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 962, 1279
PflFI GACNNNGTC 1 cut(s) 584
PfoI TCCNGGA 1 cut(s) 1274
PkrI GCNGC 1 cut(s) 286
Ppu21I YACGTR 2 cut(s) 723, 950
PscI ACATGT 1 cut(s) 917
Psp6I CCWGG 2 cut(s) 502, 1274
PspFI CCCAGC 1 cut(s) 1252
PspGI CCWGG 2 cut(s) 502, 1274
PspN4I GGNNCC 3 cut(s) 126, 216, 1053
PspPI GGNCC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 584
RsaI GTAC 4 cut(s) 140, 500, 748, 942
RsaNI GTAC 4 cut(s) 139, 499, 747, 941
RseI CAYNNNNRTG 2 cut(s) 255, 1027
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 1 cut(s) 409
ScaI AGTACT 1 cut(s) 748
ScrFI CCNGG 2 cut(s) 504, 1276
SduI GDGCHC 2 cut(s) 815, 957
SfaNI GCATC 2 cut(s) 853, 1206
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 2 cut(s) 255, 1027
SmlI CTYRAG 2 cut(s) 1141, 1211
SmoI CTYRAG 2 cut(s) 1141, 1211
SnaBI TACGTA 1 cut(s) 723
Sse9I AATT 4 cut(s) 512, 970, 987, 1146
SsiI CCGC 3 cut(s) 181, 407, 768
SspI AATATT 1 cut(s) 45
SspMI CTAG 1 cut(s) 1071
StyD4I CCNGG 2 cut(s) 502, 1274
TaaI ACNGT 3 cut(s) 102, 601, 996
TaiI ACGT 6 cut(s) 429, 444, 725, 783, 835, 952
TaqI TCGA 3 cut(s) 533, 657, 1241
TasI AATT 4 cut(s) 512, 970, 987, 1146
TatI WGTACW 2 cut(s) 746, 940
TfiI GAWTC 2 cut(s) 962, 1279
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 6 cut(s) 383, 525, 767, 1029, 1116, 1126
TspGWI ACGGA 1 cut(s) 481
Tth111I GACNNNGTC 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 409
XagI CCTNNNNNAGG 1 cut(s) 472
XapI RAATTY 1 cut(s) 512
XceI RCATGY 2 cut(s) 921, 1260
XcmI CCANNNNNNNNNTGG 1 cut(s) 1029
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 1 cut(s) 1071
ZrmI AGTACT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.