AT4G00315

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000140
Physical Location & Seq
Forward (+)
137404 .. 138888
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00315.1

Sequence Viewer

Length: 1326 bp
ATGGACAAGACAAGTCAGTTGCCTGATGAATTGCTGGTGAAGGTATTATCATTTCTTCCAACAAAAGATGCTGTAAGAACGAGTCTTTTATCGATGCGATGGAAGTCTCTTTGGATGTGGCTGCCGAAACTGGAGTACGATTTTAGGCATTATTCAGTTTCGGAAGGCCAAGGGTTAGCTAGATTTATTACTTTGAGTCTACTAGGACATAAAGCTCCGGCCATTGAAAGCTTGAGTCTCAAGCTTAGGTATGGAGCAATTGGATCAATTAAACCTGAAGATATCTATCTCTGGGTTTCACTTGCAGTTCATGATAGCAACGTCCGTGAGTTAAGTCTCAAGCTTTGTACTTTTGCGGAGCGTCCAACTAAATTGCCCAAAAGCTTATATAAATGCAAATCGATTGTGATCTTGAAACTGAAAGACGAGATTCTCGTTGATGTTCCTCGTAAGGTATGTCTCCCCTCCTTGAAAACATTGTTCCTTGGACGTGTGACTTACTCGGATGAAGATTCTCTTCACCGACTTCTCTCCAACTGCCCTGTTCTTGAGGATCTAGTTGTGGAACGAGATAGAATTGACAATTTGGGGAAATTGAGTGTGGTTGTCAAGTCCTTGCAGAGACTAACCCTAAAGATGTCTTGTCCTTGTCATCTTGATGGGATTATGATGAATACTCCTTCTTTGAAGTATTTGAAAGTCACTGATGAAAGGCAAGAGAGTGATAGTGATAATGAGAGTGATAGTGATAGTCCTCGATACTTCTACGATTTTGAAGATATGCCTAAGTTGGAGGAGGCAGATTTTGTATTGACATTCCAAAATATCAAAAAGTTCTTTAAATTTGTCACATCTATTAAGCGTCTTTCGTTATGCTTGGGAGTCTACACCGAAGAGTCTTTATATCATGAGGGTCTTGTCTTCAACCAGCTTGAACAATTGAAGATATGTTCATGTGATTCAGATTGGTCAATTTTACTTTCTCGGTTACTCGAAAGTTCTCCCAATTTACGAGAGCTCGAGGCTTACGTGATAGAAGATCATCCAGATAGGCGTGTGGATCTACCAAATCAGTGGGGCAATCAGCTGAATTGTGTTCCTAAATGTTTGTTGTCGAGTCTCGAAACGTTCAAGTGGAGTGAGATGTATGGATTGCTGCAGAACCAGATGGATGTGGCTAAATATATCTTGAGAAATGCTCGATGCTTAAAGTCTGCGACAATCTTTTTTCCGACAACCTATGCTAAAGAAACAAGAGATGAGATGATCGAGGAGTTGTCACTTTCTTTTCAAGGTCCAGAGACATGCCAAGTCTTCTTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

441

Amino Acids

50.95

Weight (kDa)

6.0

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 4.7e-10 F-box domain
F-box-like PF12937 5 - 37 2.6e-06 F-box-like
LRR_At5g56370 PF24758 105 - 239 2.6e-15 FBD-associated F-box protein At5g56370, LRR repeats
LRR_2 PF07723 156 - 181 2.8e-09 Leucine Rich Repeat
FBD PF08387 364 - 408 6.8e-19 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 199, 885
AciI CCGC 1 cut(s) 356
AclI AACGTT 1 cut(s) 1127
AclWI GGATC 3 cut(s) 271, 561, 1068
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 842
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 137, 349
AflIII ACRYGT 1 cut(s) 490
AjiI CACGTC 1 cut(s) 491
AluBI AGCT 9 cut(s) 179, 215, 231, 244, 343, 384, 931, 1018, 1087
AluI AGCT 9 cut(s) 179, 215, 231, 244, 343, 384, 931, 1018, 1087
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 7 cut(s) 111, 242, 341, 464, 616, 1124, 1295
AlwI GGATC 3 cut(s) 271, 561, 1068
Ama87I CYCGRG 1 cut(s) 1019
AoxI GGCC 2 cut(s) 166, 219
ApeKI GCWGC 2 cut(s) 121, 1156
ApoI RAATTY 1 cut(s) 842
AspS9I GGNCC 1 cut(s) 1295
AsuHPI GGTGA 2 cut(s) 49, 512
AvaI CYCGRG 1 cut(s) 1019
AvaII GGWCC 1 cut(s) 1295
BanII GRGCYC 1 cut(s) 1020
BbsI GAAGAC 2 cut(s) 913, 1306
Bbv12I GWGCWC 1 cut(s) 1020
BbvI GCAGC 2 cut(s) 108, 1143
BccI CCATC 3 cut(s) 93, 653, 1162
BcoDI GTCTC 7 cut(s) 111, 242, 341, 464, 616, 1124, 1295
BfaI CTAG 3 cut(s) 180, 203, 557
BfmI CTRYAG 1 cut(s) 1157
BisI GCNGC 2 cut(s) 122, 1157
BlsI GCNGC 2 cut(s) 123, 1158
Bme18I GGWCC 1 cut(s) 1295
BmeT110I CYCGRG 1 cut(s) 1019
BmgBI CACGTC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 1295
BmsI GCATC 3 cut(s) 58, 84, 1193
BpiI GAAGAC 2 cut(s) 913, 1306
BplI GAGNNNNNCTC 2 cut(s) 1183, 1215
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 245
BpuEI CTTGAG 5 cut(s) 224, 253, 323, 569, 1210
Bsa29I ATCGAT 2 cut(s) 92, 401
BsaAI YACGTR 1 cut(s) 1030
BsaBI GATNNNNATC 2 cut(s) 285, 407
BsaJI CCNNGG 2 cut(s) 169, 484
Bse1I ACTGG 1 cut(s) 135
Bse8I GATNNNNATC 2 cut(s) 285, 407
BseCI ATCGAT 2 cut(s) 92, 401
BseDI CCNNGG 2 cut(s) 169, 484
BseGI GGATG 4 cut(s) 120, 511, 1042, 1177
BseJI GATNNNNATC 2 cut(s) 285, 407
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 809, 1286
BseXI GCAGC 2 cut(s) 108, 1143
BshFI GGCC 2 cut(s) 168, 221
BshVI ATCGAT 2 cut(s) 92, 401
BsiHKAI GWGCWC 1 cut(s) 1020
BsiHKCI CYCGRG 1 cut(s) 1019
BsiSI CCGG 1 cut(s) 218
BsmAI GTCTC 7 cut(s) 111, 242, 341, 464, 616, 1124, 1295
BsnI GGCC 2 cut(s) 168, 221
BsoBI CYCGRG 1 cut(s) 1019
Bsp1286I GDGCHC 1 cut(s) 1020
Bsp143I GATC 6 cut(s) 263, 408, 553, 1039, 1060, 1266
BspACI CCGC 1 cut(s) 356
BspANI GGCC 2 cut(s) 168, 221
BspDI ATCGAT 2 cut(s) 92, 401
BspHI TCATGA 2 cut(s) 310, 907
BspMAI CTGCAG 1 cut(s) 1161
BspPI GGATC 3 cut(s) 271, 561, 1068
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 169, 484
BssMI GATC 6 cut(s) 263, 408, 553, 1039, 1060, 1266
BssT1I CCWWGG 2 cut(s) 169, 484
Bst6I CTCTTC 2 cut(s) 522, 888
BstBAI YACGTR 1 cut(s) 1030
BstDEI CTNAG 2 cut(s) 245, 786
BstF5I GGATG 4 cut(s) 120, 511, 1042, 1177
BstKTI GATC 6 cut(s) 266, 411, 556, 1042, 1063, 1269
BstMAI GTCTC 7 cut(s) 111, 242, 341, 464, 616, 1124, 1295
BstMBI GATC 6 cut(s) 263, 408, 553, 1039, 1060, 1266
BstNSI RCATGY 1 cut(s) 1308
BstSFI CTRYAG 1 cut(s) 1157
BstV1I GCAGC 2 cut(s) 108, 1143
BstV2I GAAGAC 2 cut(s) 913, 1306
BstX2I RGATCY 2 cut(s) 553, 1060
BstXI CCANNNNNNTGG 1 cut(s) 1074
BstYI RGATCY 2 cut(s) 553, 1060
Bsu15I ATCGAT 2 cut(s) 92, 401
BsuRI GGCC 2 cut(s) 168, 221
BsuTUI ATCGAT 2 cut(s) 92, 401
BtgZI GCGATG 1 cut(s) 112
BtrI CACGTC 1 cut(s) 491
BtsCI GGATG 4 cut(s) 120, 511, 1042, 1177
BtsIMutI CAGTG 2 cut(s) 702, 1079
CciI TCATGA 2 cut(s) 310, 907
Cfr13I GGNCC 1 cut(s) 1295
ClaI ATCGAT 2 cut(s) 92, 401
CseI GACGC 2 cut(s) 350, 851
Csp6I GTAC 2 cut(s) 136, 348
CviAII CATG 4 cut(s) 311, 908, 954, 1305
CviQI GTAC 2 cut(s) 136, 348
DdeI CTNAG 2 cut(s) 245, 786
DpnI GATC 6 cut(s) 265, 410, 555, 1041, 1062, 1268
DpnII GATC 6 cut(s) 263, 408, 553, 1039, 1060, 1266
DraI TTTAAA 1 cut(s) 841
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 522, 888
EarI CTCTTC 2 cut(s) 522, 888
Ecl136II GAGCTC 1 cut(s) 1018
Eco130I CCWWGG 2 cut(s) 169, 484
Eco24I GRGCYC 1 cut(s) 1020
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 1295
Eco53kI GAGCTC 1 cut(s) 1018
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 1019
EcoICRI GAGCTC 1 cut(s) 1018
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 169, 484
EcoT38I GRGCYC 1 cut(s) 1020
ErhI CCWWGG 2 cut(s) 169, 484
FaeI CATG 4 cut(s) 314, 911, 957, 1308
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 4 cut(s) 310, 907, 953, 1304
FblI GTMKAC 2 cut(s) 199, 885
Fnu4HI GCNGC 2 cut(s) 122, 1157
FokI GGATG 4 cut(s) 127, 518, 1029, 1184
FriOI GRGCYC 1 cut(s) 1020
Fsp4HI GCNGC 2 cut(s) 122, 1157
FspBI CTAG 3 cut(s) 180, 203, 557
GluI GCNGC 2 cut(s) 122, 1157
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 168, 221
HapII CCGG 1 cut(s) 218
HgaI GACGC 2 cut(s) 350, 851
Hin1II CATG 4 cut(s) 314, 911, 957, 1308
HindIII AAGCTT 4 cut(s) 229, 242, 341, 382
HinfI GANTC 9 cut(s) 82, 196, 235, 430, 512, 882, 896, 959, 1117
HpaII CCGG 1 cut(s) 218
HphI GGTGA 2 cut(s) 49, 512
Hpy166II GTNNAC 2 cut(s) 200, 886
Hpy188I TCNGA 4 cut(s) 163, 505, 964, 1233
Hpy188III TCNNGA 9 cut(s) 311, 412, 548, 656, 908, 1046, 1121, 1189, 1298
Hpy8I GTNNAC 2 cut(s) 200, 886
HpyAV CCTTC 3 cut(s) 34, 158, 690
HpyCH4IV ACGT 4 cut(s) 321, 490, 1029, 1127
HpyCH4V TGCA 4 cut(s) 305, 396, 619, 1159
HpyF3I CTNAG 2 cut(s) 245, 786
HpySE526I ACGT 4 cut(s) 321, 490, 1029, 1127
Hsp92II CATG 4 cut(s) 314, 911, 957, 1308
Kzo9I GATC 6 cut(s) 263, 408, 553, 1039, 1060, 1266
LmnI GCTCC 3 cut(s) 220, 254, 358
Lsp1109I GCAGC 2 cut(s) 108, 1143
LweI GCATC 3 cut(s) 58, 84, 1193
MaeI CTAG 3 cut(s) 180, 203, 557
MaeII ACGT 4 cut(s) 321, 490, 1029, 1127
MaeIII GTNAC 5 cut(s) 493, 700, 847, 987, 1278
MalI GATC 6 cut(s) 265, 410, 555, 1041, 1062, 1268
MboI GATC 6 cut(s) 263, 408, 553, 1039, 1060, 1266
MfeI CAATTG 2 cut(s) 258, 938
MflI RGATCY 2 cut(s) 553, 1060
MhlI GDGCHC 1 cut(s) 1020
MlyI GAGTC 6 cut(s) 91, 205, 244, 891, 905, 1126
MmeI TCCRAC 5 cut(s) 83, 389, 558, 771, 1256
MnlI CCTC 9 cut(s) 456, 475, 544, 765, 787, 790, 904, 1015, 1264
MseI TTAA 5 cut(s) 270, 332, 840, 858, 1208
MslI CAYNNNNRTG 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 1087
MspI CCGG 1 cut(s) 218
MunI CAATTG 2 cut(s) 258, 938
NdeII GATC 6 cut(s) 263, 408, 553, 1039, 1060, 1266
NlaIII CATG 4 cut(s) 314, 911, 957, 1308
NmuCI GTSAC 4 cut(s) 493, 700, 847, 1278
NspI RCATGY 1 cut(s) 1308
PaeR7I CTCGAG 1 cut(s) 1019
PagI TCATGA 2 cut(s) 310, 907
PcsI WCGNNNNNNNCGW 2 cut(s) 432, 1026
PfeI GAWTC 3 cut(s) 430, 512, 959
PkrI GCNGC 2 cut(s) 123, 1158
PleI GAGTC 6 cut(s) 90, 204, 243, 890, 904, 1125
PpsI GAGTC 6 cut(s) 90, 204, 243, 890, 904, 1125
Ppu21I YACGTR 1 cut(s) 1030
Psp124BI GAGCTC 1 cut(s) 1020
Psp1406I AACGTT 1 cut(s) 1127
PspPI GGNCC 1 cut(s) 1295
PspXI VCTCGAGB 1 cut(s) 1019
PstI CTGCAG 1 cut(s) 1161
PsuI RGATCY 2 cut(s) 553, 1060
PvuII CAGCTG 1 cut(s) 1087
RsaI GTAC 2 cut(s) 137, 349
RsaNI GTAC 2 cut(s) 136, 348
RseI CAYNNNNRTG 1 cut(s) 657
SacI GAGCTC 1 cut(s) 1020
SaqAI TTAA 5 cut(s) 270, 332, 840, 858, 1208
SatI GCNGC 2 cut(s) 122, 1157
Sau3AI GATC 6 cut(s) 263, 408, 553, 1039, 1060, 1266
Sau96I GGNCC 1 cut(s) 1295
SchI GAGTC 6 cut(s) 91, 205, 244, 891, 905, 1126
SduI GDGCHC 1 cut(s) 1020
SfaNI GCATC 3 cut(s) 58, 84, 1193
SfcI CTRYAG 1 cut(s) 1157
Sfr274I CTCGAG 1 cut(s) 1019
SinI GGWCC 1 cut(s) 1295
SlaI CTCGAG 1 cut(s) 1019
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 6 cut(s) 232, 239, 338, 548, 1019, 1189
SmoI CTYRAG 6 cut(s) 232, 239, 338, 548, 1019, 1189
SsiI CCGC 1 cut(s) 356
SspMI CTAG 3 cut(s) 180, 203, 557
SstI GAGCTC 1 cut(s) 1020
StyI CCWWGG 2 cut(s) 169, 484
TaiI ACGT 4 cut(s) 324, 493, 1032, 1130
TaqI TCGA 9 cut(s) 92, 401, 757, 993, 1020, 1115, 1122, 1201, 1269
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 3 cut(s) 430, 512, 959
Tru1I TTAA 5 cut(s) 270, 332, 840, 858, 1208
Tru9I TTAA 5 cut(s) 270, 332, 840, 858, 1208
TscAI CASTG 2 cut(s) 709, 1079
TseFI GTSAC 4 cut(s) 493, 700, 847, 1278
TseI GCWGC 2 cut(s) 121, 1156
Tsp45I GTSAC 4 cut(s) 493, 700, 847, 1278
TspDTI ATGAA 6 cut(s) 42, 299, 522, 686, 723, 942
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 709, 1079
VpaK11BI GGWCC 1 cut(s) 1295
XapI RAATTY 1 cut(s) 842
XceI RCATGY 1 cut(s) 1308
XhoI CTCGAG 1 cut(s) 1019
XmiI GTMKAC 2 cut(s) 199, 885
XspI CTAG 3 cut(s) 180, 203, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.