RchiOBHm_Chr5g0003811

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000140
Physical Location & Seq
Reverse (-)
2351139 .. 2352503
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28510

Sequence Viewer

Length: 1140 bp
ATGTTGTTAGAAATTCTCTCCCTGCTCCCAACAAAAGATGCTATTAGAACAAGCATACTGTCTAAAAGATGGGAACACATGTGGACATCACTTCCTCATTTTCAGTTTGATGAGGGACCGCTACTTCAGAGATATCTCTTGGTAAATGTTGTGGATAGAGCACTTCTTCTTCATGGCCCTGCTAATATAGAAGCTTTTGGTTTTAGTTTTATAGTGCTAGGTGATTCACATCGTGTTAATGCATGGATCTCTGCTATAGTAAAATGGAACGTTGAAGAGCTTTCTATAAGCCTGCAAATCATTGATGAACCAGTTTTATTGCCTGATTCCTTATTTACTTCTGCAACACTGGTGGTCTTAGATCTAGATATGCCCTGTGTTTTCAAGGTTCCTCGTACTATTTGCTTCTCAAGTCTAAAGTGCTTGAGTCTCAAGTCTGTGGTGTTTCCTGATGACTGCTTAACCCAGCAGTTGTTTTCTGGTTTCCCAGTCCTAGAAGATCTATCTCTAACAGATTGCAATTGGACGAATATTATCAAGTTTGTGAGTATTTATACTCCCAAGCTTTTGATCTTGACCATGATCGAAGGAGGTGTGGAAGTTGTGAGAGCTTCAAAATCTTCTGATGGATGTCAGATGATGGTATTTGGAGATAATCTCAAACAGTTTAATTACAAGGGTGAGTTCCTAAATGAATGTTGCATTTGCAATTCATCCTCACTAAATGAGGCTAAAATTCGTGTTGTTGATTATTCCTCCAAGAGATTGAGACGTACTGCTTACCGTTTGTATAAGCTTCTTAGAGGGCTCTCTACTGTGAAGCATCTAACTATCTCTTATTATATCTTTGAGGTGGTTCTAGATGATGCACCAGAACTTCTTGCCCAGCTGCCTTTGTTCAATGATCTAATCACTTTAGAATTTGAAGGAAGTGTAAACATTGGTAGCAAACCATTCTTATCGATGCTCCACAACTGTCCTTGTCTTCAAACTTTGATATTCCTTGAGGGGATTGAGGAGTCCTTAAATGTTGCTAAAGATGGAGATTTGGAGCCTTTGCCTCCATGCTTCCTCTCACGTATGAAAGAGATTGAAGTCTATGAATTTTATGGAGATCTGAGGATCACATACATGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

379

Amino Acids

43.07

Weight (kDa)

5.12

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 32 7.7e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 76 - 369 6.9e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 80 - 190 2.8e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 119
AclI AACGTT 1 cut(s) 270
AclWI GGATC 2 cut(s) 254, 1130
AcsI RAATTY 4 cut(s) 12, 735, 920, 1103
AcuI CTGAAG 1 cut(s) 110
AdeI CACNNNGTG 1 cut(s) 233
AfaI GTAC 2 cut(s) 397, 775
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 7 cut(s) 275, 385, 615, 901, 926, 989, 1094
AluBI AGCT 6 cut(s) 194, 280, 565, 611, 796, 889
AluI AGCT 6 cut(s) 194, 280, 565, 611, 796, 889
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 434, 763
AlwI GGATC 2 cut(s) 254, 1130
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 889
ApoI RAATTY 4 cut(s) 12, 735, 920, 1103
AspS9I GGNCC 2 cut(s) 116, 176
AsuHPI GGTGA 2 cut(s) 233, 692
AvaII GGWCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 977
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 876
BccI CCATC 4 cut(s) 63, 620, 634, 1034
BcoDI GTCTC 2 cut(s) 434, 763
BfaI CTAG 4 cut(s) 218, 365, 494, 860
BfmI CTRYAG 1 cut(s) 255
BglII AGATCT 3 cut(s) 361, 499, 1114
BisI GCNGC 1 cut(s) 890
BlsI GCNGC 1 cut(s) 891
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 116, 176
BmiI GGNNCC 3 cut(s) 117, 390, 1053
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 4 cut(s) 28, 832, 856, 954
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 977
BplI GAGNNNNNCTC 2 cut(s) 642, 674
BpuEI CTTGAG 4 cut(s) 394, 416, 445, 1025
Bsa29I ATCGAT 1 cut(s) 962
BsaAI YACGTR 1 cut(s) 1079
BsaBI GATNNNNATC 1 cut(s) 228
Bse1I ACTGG 3 cut(s) 311, 354, 488
Bse8I GATNNNNATC 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 962
BseGI GGATG 2 cut(s) 635, 713
BseJI GATNNNNATC 1 cut(s) 228
BseMII CTCAG 1 cut(s) 1109
BseNI ACTGG 3 cut(s) 311, 354, 488
BseRI GAGGAG 1 cut(s) 1031
BseXI GCAGC 1 cut(s) 876
BseYI CCCAGC 2 cut(s) 465, 885
BshFI GGCC 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 962
BsiHKAI GWGCWC 1 cut(s) 163
BslFI GGGAC 1 cut(s) 129
BsmAI GTCTC 2 cut(s) 434, 763
BsmBI CGTCTC 1 cut(s) 763
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 163, 810
Bsp143I GATC 8 cut(s) 246, 361, 499, 570, 582, 904, 1114, 1122
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 1110
BspDI ATCGAT 1 cut(s) 962
BspLI GGNNCC 3 cut(s) 117, 390, 1053
BspPI GGATC 2 cut(s) 254, 1130
BspQI GCTCTTC 1 cut(s) 270
BsrI ACTGG 3 cut(s) 311, 354, 488
BssMI GATC 8 cut(s) 246, 361, 499, 570, 582, 904, 1114, 1122
Bst4CI ACNGT 5 cut(s) 60, 666, 785, 817, 977
Bst6I CTCTTC 1 cut(s) 270
BstBAI YACGTR 1 cut(s) 1079
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 3 cut(s) 358, 800, 1118
BstF5I GGATG 2 cut(s) 635, 713
BstKTI GATC 8 cut(s) 249, 364, 502, 573, 585, 907, 1117, 1125
BstMAI GTCTC 2 cut(s) 434, 763
BstMBI GATC 8 cut(s) 246, 361, 499, 570, 582, 904, 1114, 1122
BstNSI RCATGY 2 cut(s) 82, 1135
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 876
BstV2I GAAGAC 1 cut(s) 977
BstX2I RGATCY 4 cut(s) 246, 361, 499, 1114
BstYI RGATCY 4 cut(s) 246, 361, 499, 1114
Bsu15I ATCGAT 1 cut(s) 962
BsuRI GGCC 1 cut(s) 177
BsuTUI ATCGAT 1 cut(s) 962
BtsCI GGATG 2 cut(s) 635, 713
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 116, 176
ClaI ATCGAT 1 cut(s) 962
Csp6I GTAC 2 cut(s) 396, 774
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 6 cut(s) 79, 173, 243, 580, 1065, 1132
CviQI GTAC 2 cut(s) 396, 774
DdeI CTNAG 3 cut(s) 358, 800, 1118
DpnI GATC 8 cut(s) 248, 363, 501, 572, 584, 906, 1116, 1124
DpnII GATC 8 cut(s) 246, 361, 499, 570, 582, 904, 1114, 1122
DraIII CACNNNGTG 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 810
Eco32I GATATC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 110
EcoRV GATATC 1 cut(s) 134
EcoT22I ATGCAT 2 cut(s) 244, 1137
EcoT38I GRGCYC 1 cut(s) 810
Esp3I CGTCTC 1 cut(s) 763
FaeI CATG 6 cut(s) 82, 176, 246, 583, 1068, 1135
FaqI GGGAC 1 cut(s) 129
FatI CATG 6 cut(s) 78, 172, 242, 579, 1064, 1131
Fnu4HI GCNGC 1 cut(s) 890
FokI GGATG 2 cut(s) 642, 700
FriOI GRGCYC 1 cut(s) 810
Fsp4HI GCNGC 1 cut(s) 890
FspBI CTAG 4 cut(s) 218, 365, 494, 860
GluI GCNGC 1 cut(s) 890
GsaI CCCAGC 2 cut(s) 469, 889
HaeIII GGCC 1 cut(s) 177
Hin1II CATG 6 cut(s) 82, 176, 246, 583, 1068, 1135
HindIII AAGCTT 3 cut(s) 192, 563, 794
HinfI GANTC 4 cut(s) 224, 326, 427, 1019
HphI GGTGA 2 cut(s) 233, 692
Hpy166II GTNNAC 2 cut(s) 84, 937
Hpy188I TCNGA 4 cut(s) 129, 625, 636, 1119
Hpy188III TCNNGA 4 cut(s) 365, 449, 574, 860
Hpy8I GTNNAC 2 cut(s) 84, 937
HpyAV CCTTC 2 cut(s) 581, 920
HpyCH4III ACNGT 5 cut(s) 60, 666, 785, 817, 977
HpyCH4IV ACGT 3 cut(s) 270, 772, 1078
HpyCH4V TGCA 8 cut(s) 242, 295, 344, 519, 702, 708, 869, 1135
HpyF3I CTNAG 3 cut(s) 358, 800, 1118
HpySE526I ACGT 3 cut(s) 270, 772, 1078
Hsp92II CATG 6 cut(s) 82, 176, 246, 583, 1068, 1135
Kzo9I GATC 8 cut(s) 246, 361, 499, 570, 582, 904, 1114, 1122
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 3 cut(s) 30, 972, 1051
Lsp1109I GCAGC 1 cut(s) 876
LweI GCATC 4 cut(s) 28, 832, 856, 954
MaeI CTAG 4 cut(s) 218, 365, 494, 860
MaeII ACGT 3 cut(s) 270, 772, 1078
MalI GATC 8 cut(s) 248, 363, 501, 572, 584, 906, 1116, 1124
MboI GATC 8 cut(s) 246, 361, 499, 570, 582, 904, 1114, 1122
MboII GAAGA 6 cut(s) 158, 161, 287, 509, 612, 977
MfeI CAATTG 1 cut(s) 520
MflI RGATCY 4 cut(s) 246, 361, 499, 1114
MhlI GDGCHC 2 cut(s) 163, 810
MluCI AATT 7 cut(s) 12, 520, 670, 709, 735, 920, 1103
MlyI GAGTC 2 cut(s) 436, 1028
Mph1103I ATGCAT 2 cut(s) 244, 1137
MseI TTAA 4 cut(s) 237, 461, 669, 1025
MslI CAYNNNNRTG 1 cut(s) 1130
MspA1I CMGCKG 1 cut(s) 889
MunI CAATTG 1 cut(s) 520
NdeII GATC 8 cut(s) 246, 361, 499, 570, 582, 904, 1114, 1122
NlaIII CATG 6 cut(s) 82, 176, 246, 583, 1068, 1135
NlaIV GGNNCC 3 cut(s) 117, 390, 1053
NsiI ATGCAT 2 cut(s) 244, 1137
NspI RCATGY 2 cut(s) 82, 1135
PciI ACATGT 1 cut(s) 78
PciSI GCTCTTC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 224, 326
PkrI GCNGC 1 cut(s) 891
PleI GAGTC 2 cut(s) 435, 1027
PpsI GAGTC 2 cut(s) 435, 1027
Ppu21I YACGTR 1 cut(s) 1079
PscI ACATGT 1 cut(s) 78
Psp1406I AACGTT 1 cut(s) 270
PspFI CCCAGC 2 cut(s) 465, 885
PspN4I GGNNCC 3 cut(s) 117, 390, 1053
PspPI GGNCC 2 cut(s) 116, 176
PsuI RGATCY 4 cut(s) 246, 361, 499, 1114
PvuII CAGCTG 1 cut(s) 889
RsaI GTAC 2 cut(s) 397, 775
RsaNI GTAC 2 cut(s) 396, 774
RseI CAYNNNNRTG 1 cut(s) 1130
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 4 cut(s) 237, 461, 669, 1025
SatI GCNGC 1 cut(s) 890
Sau3AI GATC 8 cut(s) 246, 361, 499, 570, 582, 904, 1114, 1122
Sau96I GGNCC 2 cut(s) 116, 176
SchI GAGTC 2 cut(s) 436, 1028
SduI GDGCHC 2 cut(s) 163, 810
SfaNI GCATC 4 cut(s) 28, 832, 856, 954
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 1130
SmlI CTYRAG 4 cut(s) 409, 424, 431, 1004
SmoI CTYRAG 4 cut(s) 409, 424, 431, 1004
Sse9I AATT 7 cut(s) 12, 520, 670, 709, 735, 920, 1103
SsiI CCGC 1 cut(s) 119
SspI AATATT 1 cut(s) 532
SspMI CTAG 4 cut(s) 218, 365, 494, 860
TaaI ACNGT 5 cut(s) 60, 666, 785, 817, 977
TaiI ACGT 3 cut(s) 273, 775, 1081
TaqI TCGA 2 cut(s) 585, 962
TasI AATT 7 cut(s) 12, 520, 670, 709, 735, 920, 1103
TfiI GAWTC 2 cut(s) 224, 326
Tru1I TTAA 4 cut(s) 237, 461, 669, 1025
Tru9I TTAA 4 cut(s) 237, 461, 669, 1025
TscAI CASTG 1 cut(s) 354
TseI GCWGC 1 cut(s) 889
TspDTI ATGAA 6 cut(s) 161, 321, 702, 708, 1097, 1116
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 4 cut(s) 12, 735, 920, 1103
XbaI TCTAGA 2 cut(s) 364, 859
XceI RCATGY 2 cut(s) 82, 1135
XspI CTAG 4 cut(s) 218, 365, 494, 860
Zsp2I ATGCAT 2 cut(s) 244, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.