AT1G50980

FBD-associated F-box protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
18900541 .. 18902057
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50980.1

Sequence Viewer

Length: 1113 bp
ATGGCGAACAAGAACTTTTCACTAACTGTGTATGATTCTGAGTATATGGAAACTAACAACAAAATTTACCAGGAAAACATGGAGAAGAAGATTCGGACAATCAGCGAGTTTCCAGATAAAGTGTTGTTGAAGATATTATCTTTACTTCCTAGTAAAGATGTCGTAGCCACTGGTGTCTTGTCAAAACGGTGGCGATCTCTTTGGAAGGATGTGAAGACATTCAGAACATCAAGCGTAGAGAGCCTGCAGCTCAAGATTAATCCATCTGCTACGAATAAAGACATCCAATCATTGGTTAATATGGCAGTTGCTCGCTCTATGAGAGAGCTGAGAATTGAGATGATTTGTAAGAACTTCGAGTTGCCCAAAAGCTTTTACATGTTTTCACAACTTGAAACTGTTATACTCGACAAAGTAAGTTTGATGGATCCTCCACCTGATGTTCATTTGCCTTGCCTCAAACGTCTCCACCTTTTATCGGTCAACTCCCTTACCAATGTTATGATATTTACTATCGATGTGCCTACGCTGAGGATATTATCTATCGATAATACTTCTGGGAAATCTCGGCCTAAAGGTGTTCATGGATTTGTGATAAATACCCCTTCTTTGAGTGTCAATGTTGTTTTTGACAACCCTTACAAGTTTCTAGCACCTCTTGGCTCAACCCAATATCTTTCTCTGTGCTCTGTCACTTCACATACTACATATCGTCCTGCGGTGTTTTCCTTCATCTTTCTTGACCATCTAGAGCTATGTTTATGTTCTGCGGAGCAGTGGAATCTACTTACCCGTATACTCAACTATGCTCCGAGACTTCGAGTTCTCCAGCTCAAACTGTATCATAAGCACTGTGTCAAGGACACTAAAAATCTGATGGGGAACCAACCAGATTTGATTCCTAAAAGTTTATCATCTCATCTGGAGATCTTGGAATGGAGACAATACAACGACACAGCGCAAGAGAGAGAAGCTGCAAAGTACATCCTAGCAAACGCGAGTGGTCTAAGAAAGGCGACATTCTACACAGAATCTACAGAGAAGCATGGGATGTTGAAAGAAGTTAGAATGTGTGGCCAGAGGTTCAAAAACATGTCAGCTTGTGTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

370

Amino Acids

42.44

Weight (kDa)

9.39

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 34 - 74 6.5e-10 F-box domain
FBD PF08387 296 - 341 1.4e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 292
AccI GTMKAC 1 cut(s) 796
AccII CGCG 1 cut(s) 998
AciI CCGC 2 cut(s) 719, 770
AclWI GGATC 2 cut(s) 422, 435
AcoI YGGCCR 1 cut(s) 1075
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 2 cut(s) 292, 478
AflIII ACRYGT 2 cut(s) 378, 1092
AgsI TTSAA 4 cut(s) 130, 395, 1057, 1087
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 7 cut(s) 250, 328, 372, 754, 832, 974, 1100
AluI AGCT 7 cut(s) 250, 328, 372, 754, 832, 974, 1100
Alw21I GWGCWC 1 cut(s) 689
Alw26I GTCTC 3 cut(s) 470, 808, 934
AlwI GGATC 2 cut(s) 422, 435
AoxI GGCC 2 cut(s) 569, 1075
ApeKI GCWGC 2 cut(s) 247, 974
ApoI RAATTY 1 cut(s) 63
AseI ATTAAT 1 cut(s) 258
Asp700I GAANNNNTTC 1 cut(s) 218
AspLEI GCGC 1 cut(s) 961
BalI TGGCCA 1 cut(s) 1077
BamHI GGATCC 1 cut(s) 427
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 689
BbvCI CCTCAGC 1 cut(s) 530
BbvI GCAGC 2 cut(s) 259, 961
BccI CCATC 4 cut(s) 271, 418, 753, 871
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 470, 808, 934
BfaI CTAG 4 cut(s) 150, 650, 749, 989
BfmI CTRYAG 2 cut(s) 245, 1035
BglII AGATCT 1 cut(s) 927
BisI GCNGC 2 cut(s) 248, 975
BlsI GCNGC 2 cut(s) 249, 976
Bme1390I CCNGG 1 cut(s) 71
BmiI GGNNCC 2 cut(s) 429, 884
BmrFI CCNGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 221
BpmI CTGGAG 2 cut(s) 812, 944
Bpu10I CCTNAGC 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 236
Bsa29I ATCGAT 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 478
Bse1I ACTGG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 71
BseCI ATCGAT 2 cut(s) 516, 546
BseGI GGATG 4 cut(s) 214, 282, 984, 1056
BseLI CCNNNNNNNGG 2 cut(s) 292, 478
BseMII CTCAG 3 cut(s) 30, 320, 521
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 259, 961
Bsh1236I CGCG 1 cut(s) 998
BshFI GGCC 2 cut(s) 571, 1077
BshVI ATCGAT 2 cut(s) 516, 546
BsiHKAI GWGCWC 1 cut(s) 689
BslI CCNNNNNNNGG 2 cut(s) 292, 478
BsmAI GTCTC 3 cut(s) 470, 808, 934
BsmBI CGTCTC 1 cut(s) 470
BsnI GGCC 2 cut(s) 571, 1077
Bsp1286I GDGCHC 1 cut(s) 689
Bsp143I GATC 3 cut(s) 194, 427, 927
BspACI CCGC 2 cut(s) 719, 770
BspANI GGCC 2 cut(s) 571, 1077
BspCNI CTCAG 3 cut(s) 31, 321, 522
BspDI ATCGAT 2 cut(s) 516, 546
BspFNI CGCG 1 cut(s) 998
BspLI GGNNCC 2 cut(s) 429, 884
BspMAI CTGCAG 1 cut(s) 249
BspPI GGATC 2 cut(s) 422, 435
BsrI ACTGG 1 cut(s) 175
BssMI GATC 3 cut(s) 194, 427, 927
BssNAI GTATAC 1 cut(s) 797
Bst1107I GTATAC 1 cut(s) 797
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 5 cut(s) 28, 189, 400, 840, 854
BstC8I GCNNGC 2 cut(s) 245, 313
BstDEI CTNAG 4 cut(s) 39, 329, 530, 1007
BstF5I GGATG 4 cut(s) 214, 282, 984, 1056
BstFNI CGCG 1 cut(s) 998
BstHHI GCGC 1 cut(s) 961
BstKTI GATC 3 cut(s) 197, 430, 930
BstMAI GTCTC 3 cut(s) 470, 808, 934
BstMBI GATC 3 cut(s) 194, 427, 927
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 2 cut(s) 382, 1096
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 2 cut(s) 245, 1035
BstUI CGCG 1 cut(s) 998
BstV1I GCAGC 2 cut(s) 259, 961
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 2 cut(s) 427, 927
BstYI RGATCY 2 cut(s) 427, 927
BstZ17I GTATAC 1 cut(s) 797
Bsu15I ATCGAT 2 cut(s) 516, 546
BsuRI GGCC 2 cut(s) 571, 1077
BsuTUI ATCGAT 2 cut(s) 516, 546
BtsCI GGATG 4 cut(s) 214, 282, 984, 1056
BtsI GCAGTG 1 cut(s) 782
BtsIMutI CAGTG 3 cut(s) 168, 782, 850
Cac8I GCNNGC 2 cut(s) 245, 313
CfoI GCGC 1 cut(s) 961
ClaI ATCGAT 2 cut(s) 516, 546
Csp6I GTAC 1 cut(s) 982
CviAII CATG 5 cut(s) 79, 379, 584, 1046, 1093
CviQI GTAC 1 cut(s) 982
DdeI CTNAG 4 cut(s) 39, 329, 530, 1007
DpnI GATC 3 cut(s) 196, 429, 929
DpnII GATC 3 cut(s) 194, 427, 927
EaeI YGGCCR 1 cut(s) 1075
EcoRII CCWGG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 5 cut(s) 82, 382, 587, 1049, 1096
FatI CATG 5 cut(s) 78, 378, 583, 1045, 1092
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 2 cut(s) 248, 975
FokI GGATG 4 cut(s) 221, 269, 971, 1063
Fsp4HI GCNGC 2 cut(s) 248, 975
FspBI CTAG 4 cut(s) 150, 650, 749, 989
GlaI GCGC 1 cut(s) 960
GluI GCNGC 2 cut(s) 248, 975
GsuI CTGGAG 2 cut(s) 812, 944
HaeIII GGCC 2 cut(s) 571, 1077
HhaI GCGC 1 cut(s) 961
Hin1II CATG 5 cut(s) 82, 382, 587, 1049, 1096
Hin6I GCGC 1 cut(s) 959
HinP1I GCGC 1 cut(s) 959
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 370
HinfI GANTC 5 cut(s) 35, 91, 781, 898, 1031
Hpy166II GTNNAC 2 cut(s) 484, 797
Hpy188I TCNGA 5 cut(s) 40, 96, 224, 813, 876
Hpy188III TCNNGA 5 cut(s) 113, 253, 740, 749, 923
Hpy8I GTNNAC 2 cut(s) 484, 797
HpyAV CCTTC 3 cut(s) 199, 615, 739
HpyCH4III ACNGT 5 cut(s) 28, 189, 400, 840, 854
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 2 cut(s) 247, 977
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 4 cut(s) 39, 329, 530, 1007
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 5 cut(s) 82, 382, 587, 1049, 1096
HspAI GCGC 1 cut(s) 959
Kzo9I GATC 3 cut(s) 194, 427, 927
LmnI GCTCC 2 cut(s) 772, 814
Lsp1109I GCAGC 2 cut(s) 259, 961
MaeI CTAG 4 cut(s) 150, 650, 749, 989
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 691
MalI GATC 3 cut(s) 196, 429, 929
MboI GATC 3 cut(s) 194, 427, 927
MboII GAAGA 4 cut(s) 97, 100, 142, 226
MflI RGATCY 2 cut(s) 427, 927
MhlI GDGCHC 1 cut(s) 689
MlsI TGGCCA 1 cut(s) 1077
MluCI AATT 2 cut(s) 63, 333
MluNI TGGCCA 1 cut(s) 1077
MnlI CCTC 5 cut(s) 441, 467, 525, 666, 1074
Mox20I TGGCCA 1 cut(s) 1077
MroXI GAANNNNTTC 1 cut(s) 218
MscI TGGCCA 1 cut(s) 1077
MseI TTAA 3 cut(s) 258, 297, 1107
Msp20I TGGCCA 1 cut(s) 1077
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 998
MwoI GCNNNNNNNGC 1 cut(s) 240
NdeII GATC 3 cut(s) 194, 427, 927
NlaIII CATG 5 cut(s) 82, 382, 587, 1049, 1096
NlaIV GGNNCC 2 cut(s) 429, 884
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 691
NspI RCATGY 2 cut(s) 382, 1096
PciI ACATGT 2 cut(s) 378, 1092
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 5 cut(s) 35, 91, 781, 898, 1031
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 2 cut(s) 249, 976
PscI ACATGT 2 cut(s) 378, 1092
PshBI ATTAAT 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 429, 884
PstI CTGCAG 1 cut(s) 249
PsuI RGATCY 2 cut(s) 427, 927
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
SaqAI TTAA 3 cut(s) 258, 297, 1107
SatI GCNGC 2 cut(s) 248, 975
Sau3AI GATC 3 cut(s) 194, 427, 927
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 689
SfcI CTRYAG 2 cut(s) 245, 1035
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 2 cut(s) 63, 333
SsiI CCGC 2 cut(s) 719, 770
SspMI CTAG 4 cut(s) 150, 650, 749, 989
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 5 cut(s) 28, 189, 400, 840, 854
TaiI ACGT 1 cut(s) 466
TaqI TCGA 5 cut(s) 357, 408, 516, 546, 820
TaqII GACCGA 1 cut(s) 469
TasI AATT 2 cut(s) 63, 333
TatI WGTACW 1 cut(s) 981
TfiI GAWTC 5 cut(s) 35, 91, 781, 898, 1031
Tru1I TTAA 3 cut(s) 258, 297, 1107
Tru9I TTAA 3 cut(s) 258, 297, 1107
TscAI CASTG 3 cut(s) 175, 782, 857
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 2 cut(s) 247, 974
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 3 cut(s) 434, 572, 721
TspRI CASTG 3 cut(s) 175, 782, 857
Van91I CCANNNNNTGG 1 cut(s) 292
VspI ATTAAT 1 cut(s) 258
XapI RAATTY 1 cut(s) 63
XbaI TCTAGA 1 cut(s) 748
XceI RCATGY 2 cut(s) 382, 1096
XmiI GTMKAC 1 cut(s) 796
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 4 cut(s) 150, 650, 749, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.