RLG00000036100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000140
Physical Location & Seq
Forward (+)
75740759 .. 75742533
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036100

Sequence Viewer

Length: 1110 bp
ATGGATGCAAGTTCTCGAATGCGCAATGTTGAAGATCTTTCTTTAGTCCTGCACAGTTTCAAGGACCCAGTTTCTTTGCCTCGTTCTTTATTTACGTCTGCGACATTGAAAGTGCTCCTGCTGGAACTGCCCTGTATTTTCAAAGTTCCCTCTACTATTTGTTTCTCAAGCCTAAGGAGCTTAACTCTTTCGTCCGTGGTGTTTTCTGACGACTACTCGGCCCAGAAGTTGTTTTCTGGTTGCTCAGTTCTTGAGGAAATATTTCTATATGGTTGCAATTGGGCAAATCTCAACTTTGTGAGTATTTCTGCTCCGAAGCTTTTGAGGTTTACCATAGATGAAGGGGATTCACAAATGTTAAGAGGTTCAGATGGTTGTCAGATTATGGTACTTGGAGTTAGACTCTCATATTTTTCTTACACAGGTGAGTTCCTAGATGACTATTGCTTTTGTAACTCATCAGCAAATGAAGCTCTGATATCTCTTAATTCTATCAAGAGGGTCCAACATGTTAGTTACCGGTTGTATAAGCTTCTTAATGGGCTCTCTAGTGTGAAGCACCTAACCATCTGTGATACGTCCTTTGAGGTGGTTCAGACTAATGCTTCAGAACATCTTATGCCCTCGTTCAATAATCTAACCACCTTGATATTTGAACGAGTGGAAGTAGATCTCGGTTGCAAAGGACTGTTGACCTTTCTTCAAAATTGTCCTTGTCTTAAGTATCTTATATTTTGTGAGGGGATTGGTCTGTACTCAGATGATGCAAAAGATGATGGGATGTTGGAGCCACTGCCTCCATGTTTCTTGAATAGTCTTGAAGAGATTGATGTCTTAGAATTTTGTGGAGATGAGGATGAGCTTCATGCAATGAAGGTCTTGCTAAAATGTGCAATGGTCTTGAAAAAGGTTACTATTAATTGGTGCAGTGGTGTTCAAGTGGAACCAGAAACGATGAAGGACATTAACAAACAGTTATTAGATCTCCCCAGAGGGTTGAACATTAGCTTTCAACTTGAATTCTCCAAGTTGAATCTTTCTAAACCGAAACTAGCCTATAGACAATTCGATGTAGCTAGAACATGGATTGCAAAGGGTGCTGCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

370

Amino Acids

41.4

Weight (kDa)

5.13

Isoelectric Point (pI)

24.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 7 - 108 2.5e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
AcsI RAATTY 2 cut(s) 839, 1019
AcuI CTGAAG 1 cut(s) 591
AfaI GTAC 2 cut(s) 390, 755
AflII CTTAAG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 508
AgeI ACCGGT 1 cut(s) 519
AluBI AGCT 7 cut(s) 180, 319, 473, 532, 862, 1008, 1076
AluI AGCT 7 cut(s) 180, 319, 473, 532, 862, 1008, 1076
Alw21I GWGCWC 1 cut(s) 117
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 1100
ApoI RAATTY 2 cut(s) 839, 1019
AseI ATTAAT 1 cut(s) 918
AsiGI ACCGGT 1 cut(s) 519
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 64, 220, 502
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 2 cut(s) 64, 502
AxyI CCTNAGG 1 cut(s) 173
BanII GRGCYC 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 1087
BccI CCATC 3 cut(s) 365, 575, 770
BfaI CTAG 4 cut(s) 434, 549, 1052, 1077
BfmI CTRYAG 1 cut(s) 1057
BfrI CTTAAG 1 cut(s) 719
BglII AGATCT 3 cut(s) 34, 670, 982
BisI GCNGC 1 cut(s) 1101
BlsI GCNGC 1 cut(s) 1102
Bme18I GGWCC 2 cut(s) 64, 502
BmgT120I GGNCC 3 cut(s) 64, 220, 502
BmiI GGNNCC 4 cut(s) 66, 503, 789, 945
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 754
BmuI ACTGGG 1 cut(s) 62
BplI GAGNNNNNCTC 4 cut(s) 169, 201, 387, 419
BpuEI CTTGAG 2 cut(s) 151, 272
BsaJI CCNNGG 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 519
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 173
Bse3DI GCAATG 3 cut(s) 31, 876, 900
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 3 cut(s) 10, 786, 862
BseMI GCAATG 3 cut(s) 31, 876, 900
BseMII CTCAG 2 cut(s) 258, 771
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 1087
BsgI GTGCAG 2 cut(s) 35, 946
BshFI GGCC 1 cut(s) 221
BshTI ACCGGT 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 520
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 117, 546
Bsp143I GATC 3 cut(s) 34, 670, 982
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 257, 770
BspLI GGNNCC 4 cut(s) 66, 503, 789, 945
BspTI CTTAAG 1 cut(s) 719
BsrDI GCAATG 3 cut(s) 31, 876, 900
BsrFI RCCGGY 1 cut(s) 519
BsrI ACTGG 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 3 cut(s) 34, 670, 982
Bst4CI ACNGT 3 cut(s) 56, 690, 975
Bst6I CTCTTC 1 cut(s) 816
BstAFI CTTAAG 1 cut(s) 719
BstAPI GCANNNNNTGC 1 cut(s) 1097
BstDEI CTNAG 4 cut(s) 173, 244, 757, 835
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 3 cut(s) 10, 786, 862
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 3 cut(s) 37, 673, 985
BstMBI GATC 3 cut(s) 34, 670, 982
BstMWI GCNNNNNNNGC 4 cut(s) 127, 177, 470, 1097
BstNSI RCATGY 1 cut(s) 512
BstSFI CTRYAG 1 cut(s) 1057
BstV1I GCAGC 1 cut(s) 1087
BstX2I RGATCY 3 cut(s) 34, 670, 982
BstYI RGATCY 3 cut(s) 34, 670, 982
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 1 cut(s) 221
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 3 cut(s) 10, 786, 862
BtsI GCAGTG 2 cut(s) 791, 934
BtsIMutI CAGTG 2 cut(s) 791, 934
CfoI GCGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 3 cut(s) 64, 220, 502
Csp6I GTAC 2 cut(s) 389, 754
CspAI ACCGGT 1 cut(s) 519
CviAII CATG 4 cut(s) 509, 801, 866, 1083
CviQI GTAC 2 cut(s) 389, 754
DdeI CTNAG 4 cut(s) 173, 244, 757, 835
DpnI GATC 3 cut(s) 36, 672, 984
DpnII GATC 3 cut(s) 34, 670, 982
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
Eco24I GRGCYC 1 cut(s) 546
Eco32I GATATC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 64, 502
Eco57I CTGAAG 1 cut(s) 591
Eco81I CCTNAGG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 1019
EcoRV GATATC 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 546
FaeI CATG 4 cut(s) 512, 804, 869, 1086
FatI CATG 4 cut(s) 508, 800, 865, 1082
Fnu4HI GCNGC 1 cut(s) 1101
FokI GGATG 3 cut(s) 17, 793, 869
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 1 cut(s) 1101
FspBI CTAG 4 cut(s) 434, 549, 1052, 1077
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 1101
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 520
HhaI GCGC 1 cut(s) 24
Hin1II CATG 4 cut(s) 512, 804, 869, 1086
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HindIII AAGCTT 2 cut(s) 317, 530
HinfI GANTC 3 cut(s) 347, 402, 1033
HpaII CCGG 1 cut(s) 520
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 330, 693
Hpy188I TCNGA 8 cut(s) 208, 315, 370, 381, 477, 597, 610, 760
Hpy188III TCNNGA 6 cut(s) 15, 251, 496, 808, 818, 901
Hpy8I GTNNAC 2 cut(s) 330, 693
HpyAV CCTTC 3 cut(s) 335, 868, 952
HpyCH4III ACNGT 3 cut(s) 56, 690, 975
HpyCH4IV ACGT 2 cut(s) 95, 578
HpyCH4V TGCA 9 cut(s) 8, 52, 276, 681, 767, 869, 893, 927, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 177, 470, 1097
HpyF3I CTNAG 4 cut(s) 173, 244, 757, 835
HpySE526I ACGT 2 cut(s) 95, 578
Hsp92II CATG 4 cut(s) 512, 804, 869, 1086
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 34, 670, 982
LmnI GCTCC 4 cut(s) 120, 177, 316, 787
Lsp1109I GCAGC 1 cut(s) 1087
LweI GCATC 1 cut(s) 754
MaeI CTAG 4 cut(s) 434, 549, 1052, 1077
MaeII ACGT 2 cut(s) 95, 578
MaeIII GTNAC 3 cut(s) 452, 515, 910
MalI GATC 3 cut(s) 36, 672, 984
MboI GATC 3 cut(s) 34, 670, 982
MboII GAAGA 3 cut(s) 44, 692, 833
MfeI CAATTG 1 cut(s) 277
MflI RGATCY 3 cut(s) 34, 670, 982
MhlI GDGCHC 2 cut(s) 117, 546
MluCI AATT 7 cut(s) 277, 487, 706, 839, 919, 1019, 1064
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 2 cut(s) 529, 765
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 7 cut(s) 182, 359, 486, 537, 720, 918, 966
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 1 cut(s) 520
MunI CAATTG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 24
MwoI GCNNNNNNNGC 4 cut(s) 127, 177, 470, 1097
NdeII GATC 3 cut(s) 34, 670, 982
NlaIII CATG 4 cut(s) 512, 804, 869, 1086
NlaIV GGNNCC 4 cut(s) 66, 503, 789, 945
NmeAIII GCCGAG 1 cut(s) 197
NsbI TGCGCA 1 cut(s) 23
NspI RCATGY 1 cut(s) 512
PciI ACATGT 1 cut(s) 508
PctI GAATGC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 347, 1033
PinAI ACCGGT 1 cut(s) 519
PkrI GCNGC 1 cut(s) 1102
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PpuMI RGGWCCY 1 cut(s) 64
PscI ACATGT 1 cut(s) 508
PshBI ATTAAT 1 cut(s) 918
Psp5II RGGWCCY 1 cut(s) 64
PspN4I GGNNCC 4 cut(s) 66, 503, 789, 945
PspPI GGNCC 3 cut(s) 64, 220, 502
PspPPI RGGWCCY 1 cut(s) 64
PsuI RGATCY 3 cut(s) 34, 670, 982
RsaI GTAC 2 cut(s) 390, 755
RsaNI GTAC 2 cut(s) 389, 754
SaqAI TTAA 7 cut(s) 182, 359, 486, 537, 720, 918, 966
SatI GCNGC 1 cut(s) 1101
Sau3AI GATC 3 cut(s) 34, 670, 982
Sau96I GGNCC 3 cut(s) 64, 220, 502
SchI GAGTC 1 cut(s) 396
SduI GDGCHC 2 cut(s) 117, 546
SfaNI GCATC 1 cut(s) 754
SfcI CTRYAG 1 cut(s) 1057
SinI GGWCC 2 cut(s) 64, 502
SmlI CTYRAG 3 cut(s) 166, 251, 719
SmoI CTYRAG 3 cut(s) 166, 251, 719
Sse9I AATT 7 cut(s) 277, 487, 706, 839, 919, 1019, 1064
SspI AATATT 1 cut(s) 261
SspMI CTAG 4 cut(s) 434, 549, 1052, 1077
TaaI ACNGT 3 cut(s) 56, 690, 975
TaiI ACGT 2 cut(s) 98, 581
TaqI TCGA 2 cut(s) 16, 1068
TasI AATT 7 cut(s) 277, 487, 706, 839, 919, 1019, 1064
TatI WGTACW 1 cut(s) 753
TfiI GAWTC 2 cut(s) 347, 1033
Tru1I TTAA 7 cut(s) 182, 359, 486, 537, 720, 918, 966
Tru9I TTAA 7 cut(s) 182, 359, 486, 537, 720, 918, 966
TscAI CASTG 2 cut(s) 798, 934
TseI GCWGC 1 cut(s) 1100
TspDTI ATGAA 5 cut(s) 354, 483, 854, 887, 971
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 2 cut(s) 798, 934
Vha464I CTTAAG 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 64, 502
VspI ATTAAT 1 cut(s) 918
XapI RAATTY 2 cut(s) 839, 1019
XceI RCATGY 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 4 cut(s) 434, 549, 1052, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.