Rorug05G0399700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000140
Physical Location & Seq
Forward (+)
54945411 .. 54946891
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0399700.1

Sequence Viewer

Length: 930 bp
ATGATACCTATGCCAAAATCTTCCCCACAACATGAGGAAGATTTTGGGATATACTTTGATGCTCTTGAATCTGGTGTCATCGACTCAGCAGATTGTGTACAAAGGATTTCTTACTGTTTTTGGTGGGGACTGCAAAACCTGAGCTCCCTCGGCCAAAGCCTGAAAACAAGTACCTATGTGTGGGAAATCTACTATGCTGTTTTCATTTCGGTTTCTGGTTTGGTACTATTTTCATCTCTTATTGGAAATATGCAGGTGCCATTCTTTGAAAACTTGGATAAGCAAGTGCTGGATGCAATGTCTGATAGTCTCAAGCCGGTACTTTACAAAGAAGAAAGTAATATTGTTCGGGAAGGAGAACCAATGGATGCGATGCTCTTCATAATGCGAGGCAGACTCTTGAGTGTGACTACTTATGGTGGAAGGACTGGTTTCTTCTTCAACTCGGTAAATCTCAAGGCTGGTGACTTTTGTGGTGAAGAGCTCCTCACATGGTCTCTTGATCCACTCCCCTATTCTACTCTTCCAATCTCCACTAGAACTGTCCAAGCCCTTAGTGAAATTGAAGCCTTTGCTCTGAAAGCAGATGACTTGAAGTCCGTAGCCTCTCAGTTCCTGCGGCTTCACACATTCAGATTTTACTCAAATCCCTGGAGGACTTGGGCAGCTTGCTATATTCAAGCAACTTGGTGCCACCATTATAAGAAGAAGCTAGAGAAGTCTTTGCGGAAAGAGGAGAATAGGTTGCAAGATGCACTAGTCAAGGCTGGTGGAAACTCCCCAACTCTAGGTTCCACCATATACGCCTTGCGTTTTGCTGCCAATGCACTTCATGCTATTAGGCGCAACGATAGGCCATTGCTACTCCAGAAGCCAGCAGAGCCTGATATATCTGCTCAAAAGCAACATGTAGTAGCCTTTCGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

309

Amino Acids

35.05

Weight (kDa)

7.01

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 702
AarI CACCTGC 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 244
AccB1I GGYRCC 2 cut(s) 256, 690
AciI CCGC 2 cut(s) 619, 727
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 151
AfaI GTAC 4 cut(s) 99, 172, 225, 321
AfiI CCNNNNNNNGG 2 cut(s) 180, 788
AflIII ACRYGT 1 cut(s) 907
AgsI TTSAA 6 cut(s) 68, 269, 442, 566, 595, 680
AhdI GACNNNNNGTC 1 cut(s) 595
AhlI ACTAGT 1 cut(s) 757
AjnI CCWGG 1 cut(s) 650
AjuI GAANNNNNNNTTGG 2 cut(s) 775, 807
AluBI AGCT 4 cut(s) 144, 484, 668, 712
AluI AGCT 4 cut(s) 144, 484, 668, 712
Alw21I GWGCWC 2 cut(s) 146, 486
Alw26I GTCTC 2 cut(s) 314, 501
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 2 cut(s) 616, 884
AoxI GGCC 2 cut(s) 151, 854
ApeKI GCWGC 2 cut(s) 665, 818
AspLEI GCGC 1 cut(s) 846
AsuHPI GGTGA 2 cut(s) 476, 488
BanI GGYRCC 2 cut(s) 256, 690
BanII GRGCYC 2 cut(s) 146, 486
Bbv12I GWGCWC 2 cut(s) 146, 486
BbvI GCAGC 2 cut(s) 677, 805
BciT130I CCWGG 1 cut(s) 652
BcoDI GTCTC 2 cut(s) 314, 501
BcuI ACTAGT 1 cut(s) 757
BfaI CTAG 4 cut(s) 537, 713, 758, 788
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 3 cut(s) 620, 666, 819
BlsI GCNGC 3 cut(s) 621, 667, 820
Bme1390I CCNGG 1 cut(s) 652
BmeRI GACNNNNNGTC 1 cut(s) 595
BmiI GGNNCC 3 cut(s) 258, 692, 793
BmrFI CCNGG 1 cut(s) 652
BmsI GCATC 5 cut(s) 49, 283, 358, 363, 742
BplI GAGNNNNNCTC 2 cut(s) 381, 413
BpmI CTGGAG 2 cut(s) 673, 851
Bpu10I CCTNAGC 1 cut(s) 140
BpuEI CTTGAG 3 cut(s) 296, 421, 440
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 148, 650
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 728, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 788
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 433
Bse3DI GCAATG 2 cut(s) 303, 857
BseBI CCWGG 1 cut(s) 652
BseDI CCNNGG 2 cut(s) 148, 650
BseGI GGATG 2 cut(s) 298, 373
BseLI CCNNNNNNNGG 2 cut(s) 180, 788
BseMI GCAATG 2 cut(s) 303, 857
BseMII CTCAG 3 cut(s) 99, 131, 623
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 2 cut(s) 476, 749
BseXI GCAGC 2 cut(s) 677, 805
BshFI GGCC 2 cut(s) 153, 856
BshNI GGYRCC 2 cut(s) 256, 690
BsiHKAI GWGCWC 2 cut(s) 146, 486
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 180, 788
BsmAI GTCTC 2 cut(s) 314, 501
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 2 cut(s) 153, 856
Bso31I GGTCTC 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 146, 486
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 2 cut(s) 619, 727
BspANI GGCC 2 cut(s) 153, 856
BspCNI CTCAG 3 cut(s) 98, 132, 622
BspLI GGNNCC 3 cut(s) 258, 692, 793
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 497
BspQI GCTCTTC 2 cut(s) 383, 474
BspT107I GGYRCC 2 cut(s) 256, 690
BspTNI GGTCTC 1 cut(s) 501
BsrDI GCAATG 2 cut(s) 303, 857
BsrFI RCCGGY 1 cut(s) 316
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 148, 650
BssMI GATC 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 652
Bst4CI ACNGT 2 cut(s) 116, 544
Bst6I CTCTTC 3 cut(s) 383, 474, 528
BstAPI GCANNNNNTGC 1 cut(s) 833
BstAUI TGTACA 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 670, 876
BstDEI CTNAG 4 cut(s) 85, 140, 554, 609
BstF5I GGATG 2 cut(s) 298, 373
BstHHI GCGC 1 cut(s) 846
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 2 cut(s) 314, 501
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 5 cut(s) 150, 581, 824, 833, 880
BstNI CCWGG 1 cut(s) 652
BstNSI RCATGY 1 cut(s) 911
BstSCI CCNGG 1 cut(s) 650
BstV1I GCAGC 2 cut(s) 677, 805
BsuRI GGCC 2 cut(s) 153, 856
BtgZI GCGATG 1 cut(s) 386
BtsCI GGATG 2 cut(s) 298, 373
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 2 cut(s) 670, 876
CaiI CAGNNNCTG 2 cut(s) 616, 884
CfoI GCGC 1 cut(s) 846
Cfr10I RCCGGY 1 cut(s) 316
Csp6I GTAC 4 cut(s) 98, 171, 224, 320
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviAII CATG 4 cut(s) 32, 492, 833, 908
CviQI GTAC 4 cut(s) 98, 171, 224, 320
DdeI CTNAG 4 cut(s) 85, 140, 554, 609
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
DriI GACNNNNNGTC 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 3 cut(s) 383, 474, 528
Eam1105I GACNNNNNGTC 1 cut(s) 595
EarI CTCTTC 3 cut(s) 383, 474, 528
Ecl136II GAGCTC 2 cut(s) 144, 484
Eco24I GRGCYC 2 cut(s) 146, 486
Eco31I GGTCTC 1 cut(s) 501
Eco53kI GAGCTC 2 cut(s) 144, 484
EcoICRI GAGCTC 2 cut(s) 144, 484
EcoRII CCWGG 1 cut(s) 650
EcoT38I GRGCYC 2 cut(s) 146, 486
FaeI CATG 4 cut(s) 35, 495, 836, 911
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FaqI GGGAC 1 cut(s) 141
FatI CATG 4 cut(s) 31, 491, 832, 907
Fnu4HI GCNGC 3 cut(s) 620, 666, 819
FokI GGATG 2 cut(s) 305, 380
FriOI GRGCYC 2 cut(s) 146, 486
Fsp4HI GCNGC 3 cut(s) 620, 666, 819
FspBI CTAG 4 cut(s) 537, 713, 758, 788
GlaI GCGC 1 cut(s) 845
GluI GCNGC 3 cut(s) 620, 666, 819
GsuI CTGGAG 2 cut(s) 673, 851
HaeIII GGCC 2 cut(s) 153, 856
HapII CCGG 1 cut(s) 317
HhaI GCGC 1 cut(s) 846
Hin1II CATG 4 cut(s) 35, 495, 836, 911
Hin6I GCGC 1 cut(s) 844
HinP1I GCGC 1 cut(s) 844
HinfI GANTC 3 cut(s) 68, 83, 396
HpaII CCGG 1 cut(s) 317
HphI GGTGA 2 cut(s) 476, 488
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 3 cut(s) 304, 579, 635
Hpy188III TCNNGA 5 cut(s) 65, 350, 400, 500, 868
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 347, 417
HpyCH4III ACNGT 2 cut(s) 116, 544
HpyCH4V TGCA 6 cut(s) 133, 253, 296, 748, 755, 827
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 581, 824, 833, 880
HpyF3I CTNAG 4 cut(s) 85, 140, 554, 609
Hsp92II CATG 4 cut(s) 35, 495, 836, 911
HspAI GCGC 1 cut(s) 844
Kzo9I GATC 1 cut(s) 502
LguI GCTCTTC 2 cut(s) 383, 474
LmnI GCTCC 2 cut(s) 149, 489
Lsp1109I GCAGC 2 cut(s) 677, 805
LweI GCATC 5 cut(s) 49, 283, 358, 363, 742
MaeI CTAG 4 cut(s) 537, 713, 758, 788
MaeIII GTNAC 2 cut(s) 406, 464
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 9 cut(s) 12, 50, 344, 370, 427, 430, 491, 515, 718
MhlI GDGCHC 2 cut(s) 146, 486
MluCI AATT 1 cut(s) 561
MlyI GAGTC 2 cut(s) 77, 390
MnlI CCTC 7 cut(s) 28, 158, 383, 497, 616, 648, 727
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 652
MvaI CCWGG 1 cut(s) 652
MwoI GCNNNNNNNGC 5 cut(s) 150, 581, 824, 833, 880
NdeII GATC 1 cut(s) 502
NlaIII CATG 4 cut(s) 35, 495, 836, 911
NlaIV GGNNCC 3 cut(s) 258, 692, 793
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 2 cut(s) 406, 464
NspI RCATGY 1 cut(s) 911
PaqCI CACCTGC 1 cut(s) 244
PciI ACATGT 1 cut(s) 907
PciSI GCTCTTC 2 cut(s) 383, 474
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 3 cut(s) 621, 667, 820
PleI GAGTC 2 cut(s) 77, 390
PpsI GAGTC 2 cut(s) 77, 390
PscI ACATGT 1 cut(s) 907
PsiI TTATAA 1 cut(s) 702
Psp124BI GAGCTC 2 cut(s) 146, 486
Psp6I CCWGG 1 cut(s) 650
PspGI CCWGG 1 cut(s) 650
PspN4I GGNNCC 3 cut(s) 258, 692, 793
PstNI CAGNNNCTG 2 cut(s) 616, 884
RsaI GTAC 4 cut(s) 99, 172, 225, 321
RsaNI GTAC 4 cut(s) 98, 171, 224, 320
SacI GAGCTC 2 cut(s) 146, 486
SapI GCTCTTC 2 cut(s) 383, 474
SatI GCNGC 3 cut(s) 620, 666, 819
Sau3AI GATC 1 cut(s) 502
SchI GAGTC 2 cut(s) 77, 390
ScrFI CCNGG 1 cut(s) 652
SduI GDGCHC 2 cut(s) 146, 486
SfaNI GCATC 5 cut(s) 49, 283, 358, 363, 742
SmlI CTYRAG 3 cut(s) 311, 400, 455
SmoI CTYRAG 3 cut(s) 311, 400, 455
SpeI ACTAGT 1 cut(s) 757
Sse9I AATT 1 cut(s) 561
SsiI CCGC 2 cut(s) 619, 727
SspI AATATT 1 cut(s) 343
SspMI CTAG 4 cut(s) 537, 713, 758, 788
SstI GAGCTC 2 cut(s) 146, 486
StyD4I CCNGG 1 cut(s) 650
TaaI ACNGT 2 cut(s) 116, 544
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 561
TatI WGTACW 1 cut(s) 97
TauI GCSGC 1 cut(s) 622
TfiI GAWTC 1 cut(s) 68
TseFI GTSAC 2 cut(s) 406, 464
TseI GCWGC 2 cut(s) 665, 818
Tsp45I GTSAC 2 cut(s) 406, 464
TspDTI ATGAA 4 cut(s) 193, 222, 370, 821
TspGWI ACGGA 1 cut(s) 589
XceI RCATGY 1 cut(s) 911
XspI CTAG 4 cut(s) 537, 713, 758, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.