AT4G15075

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000140
Physical Location & Seq
Forward (+)
8607777 .. 8608519
743 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15075.1

Sequence Viewer

Length: 507 bp
ATGCCTAAGTTAGGGGAGGCGGATATCGAAACGACATACCCCGATATCAACAAGTTTGTAACATCAATCACATCTGTCAACCGGCTTTCATTATGTGTAAGAGTCAACTCTGCGGAAGAGCTTGAGAATCTGAAGCTTTGTCCATGTGATGCAAATTGGTCAAAGTTACTTGTCCGTTTTCTCGAAAATTCGCATAATTTACTAGAGCTAGAGATCGATCTGAACGATGATCATATAGATAGTTGTGTGGTCGATCCACTGGTTTGCTTGGAGAATCAGTTGAACTATGTTCCTGAATGTTTGAGGTCGAATCTCGAAACTAAGTGGACAGGGATGCATGGATCACAGAAAGAGATAGATATGCTTAAATATATTTTGAGAAATGCTTGTTGCTTAAAGACTGCGACAATCTTGTTTAAGTCTACTCCAGATACAGAGGATAAACATAAGACGATGATCCAGGAGTTGTTACTTTCTTCAACAACATGCCAACTCGTATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

168

Amino Acids

19.15

Weight (kDa)

4.82

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 95 - 137 1.1e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 422
AciI CCGC 2 cut(s) 20, 113
AclWI GGATC 3 cut(s) 248, 349, 451
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 283, 480
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 3 cut(s) 121, 136, 208
AluI AGCT 3 cut(s) 121, 136, 208
AlwI GGATC 3 cut(s) 248, 349, 451
ApoI RAATTY 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 461
BclI TGATCA 1 cut(s) 229
BfaI CTAG 2 cut(s) 203, 209
Bme1390I CCNGG 1 cut(s) 461
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 2 cut(s) 139, 324
BpmI CTGGAG 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse118I RCCGGY 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 461
BseCI ATCGAT 1 cut(s) 216
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 216
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 11
Bsp143I GATC 6 cut(s) 213, 217, 229, 253, 341, 456
BspACI CCGC 2 cut(s) 20, 113
BspDI ATCGAT 1 cut(s) 216
BspPI GGATC 3 cut(s) 248, 349, 451
BspQI GCTCTTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 81
BsrI ACTGG 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 81
BssMI GATC 6 cut(s) 213, 217, 229, 253, 341, 456
Bst2UI CCWGG 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 6, 321
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 339
BstKTI GATC 6 cut(s) 216, 220, 232, 256, 344, 459
BstMBI GATC 6 cut(s) 213, 217, 229, 253, 341, 456
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 459
Bsu15I ATCGAT 1 cut(s) 216
BsuTUI ATCGAT 1 cut(s) 216
BtsCI GGATG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 81
ClaI ATCGAT 1 cut(s) 216
CviAII CATG 3 cut(s) 144, 338, 486
CviJI RGCY 4 cut(s) 85, 121, 136, 208
CviKI_1 RGCY 4 cut(s) 85, 121, 136, 208
DdeI CTNAG 2 cut(s) 6, 321
DpnI GATC 6 cut(s) 215, 219, 231, 255, 343, 458
DpnII GATC 6 cut(s) 213, 217, 229, 253, 341, 456
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 35
Eco32I GATATC 2 cut(s) 25, 46
Eco57I CTGAAG 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 459
EcoRV GATATC 2 cut(s) 25, 46
EcoT22I ATGCAT 1 cut(s) 339
FaeI CATG 3 cut(s) 147, 341, 489
FatI CATG 3 cut(s) 143, 337, 485
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 422
FokI GGATG 1 cut(s) 346
FspBI CTAG 2 cut(s) 203, 209
GsuI CTGGAG 1 cut(s) 411
HapII CCGG 1 cut(s) 82
Hin1II CATG 3 cut(s) 147, 341, 489
HincII GTYRAC 2 cut(s) 79, 106
HindII GTYRAC 2 cut(s) 79, 106
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 4 cut(s) 102, 127, 274, 310
HpaII CCGG 1 cut(s) 82
Hpy166II GTNNAC 4 cut(s) 79, 106, 327, 423
Hpy188I TCNGA 2 cut(s) 132, 222
Hpy188III TCNNGA 4 cut(s) 182, 293, 314, 428
Hpy8I GTNNAC 4 cut(s) 79, 106, 327, 423
HpyCH4V TGCA 2 cut(s) 152, 337
HpyF3I CTNAG 2 cut(s) 6, 321
Hsp92II CATG 3 cut(s) 147, 341, 489
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 6 cut(s) 213, 217, 229, 253, 341, 456
LguI GCTCTTC 1 cut(s) 111
LpnPI CCDG 7 cut(s) 95, 245, 306, 315, 441, 446, 473
LweI GCATC 2 cut(s) 139, 324
MaeI CTAG 2 cut(s) 203, 209
MaeIII GTNAC 3 cut(s) 58, 165, 468
MalI GATC 6 cut(s) 215, 219, 231, 255, 343, 458
MboI GATC 6 cut(s) 213, 217, 229, 253, 341, 456
MboII GAAGA 2 cut(s) 128, 468
MluCI AATT 3 cut(s) 154, 187, 196
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 3 cut(s) 10, 297, 430
Mph1103I ATGCAT 1 cut(s) 339
MseI TTAA 3 cut(s) 366, 395, 417
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 461
MvaI CCWGG 1 cut(s) 461
NdeII GATC 6 cut(s) 213, 217, 229, 253, 341, 456
NlaIII CATG 3 cut(s) 147, 341, 489
NsiI ATGCAT 1 cut(s) 339
NspI RCATGY 1 cut(s) 489
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 3 cut(s) 127, 274, 310
PfoI TCCNGGA 1 cut(s) 459
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 366, 395, 417
Sau3AI GATC 6 cut(s) 213, 217, 229, 253, 341, 456
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 461
SetI ASST 4 cut(s) 123, 138, 210, 308
SfaNI GCATC 2 cut(s) 139, 324
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 3 cut(s) 154, 187, 196
SsiI CCGC 2 cut(s) 20, 113
SspMI CTAG 2 cut(s) 203, 209
StyD4I CCNGG 1 cut(s) 459
TaqI TCGA 6 cut(s) 27, 183, 216, 252, 308, 315
TasI AATT 3 cut(s) 154, 187, 196
TfiI GAWTC 3 cut(s) 127, 274, 310
Tru1I TTAA 3 cut(s) 366, 395, 417
Tru9I TTAA 3 cut(s) 366, 395, 417
TscAI CASTG 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 1 cut(s) 264
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 1 cut(s) 187
XceI RCATGY 1 cut(s) 489
XmiI GTMKAC 1 cut(s) 422
XspI CTAG 2 cut(s) 203, 209
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.