AT4G13965

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000140
Physical Location & Seq
Reverse (-)
8066138 .. 8067576
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13965.1

Sequence Viewer

Length: 1272 bp
AAAAGAGGTCGAGGTATTGTGAATGCGGACAGGATCAGTCAGTTGCCTGAGGCTTTGATTATTCAGATACTGTCTTTGCTTCCTACAGAAGTTGCTGTTACCACGAGTGTTTTGTCTAAGCAATGGCAGTTTCTGTGGAAGATGTTGCCTAAACTCAACTTTGATTCTTTAGATCAGAGACATGAATTCAAAACATTTTCAAAGAATGTTAAAAGGGCTCTGCTTTCACATAAGGCTCCGGTTCTGCATAGTTTGCATCTCATAGTTCATTTACATTTATGTAATTCAATGAATACTGCAAAATTGATTGGCATTGCATTTGCCTGCAATTTGCGTAAGTTGGTACTCGAAGTTGATGGGGGACGCTTCTCAATTCCTGAAAGCTTGTATAACTGTGAAACGCTAGATACCTTGGAACTCAAGTATTCGATTCTTATGGATGTCCCTTCTTCGATTTGTCTGAAATCCCTTAGAACTCTGCACCTTCACTATGTGGACTTCAAAGACAATGAATCAGCTCTTAACCTTTTATCTGGCTGTCCTAATCTTGAAAACTTGGTGGTGCATCGATATCCATTCAGCAGTGTGAAGACATACACTATTGCGGTGTCATCCTTAAAGAGACTAACAATTTATACATCAAGTACTGTTGATCCGCGCGCTGGATATGTGATAAATTCTCCTTCTTTAACATACTTGAAGATTGTAGGTCAAATTGGGTTTTGTCTGATAGAGAACGTACCAGAGCTGGTGGAGGCAAGTATGATTGTTTCCTCTCAGATAATCAATAAGAACCTTCTGGAATCTCTAACTTCAGTCAAACGTCTGTTCTTAGAATTCTCACCCTTGATGATTAAGTTTCCTGCTGGTAGTATCTTCTATCAGCTGGTATATTTGGAGCTACTGACACATGAAGCAGAGTGTTTGAATCTACTTACTCTAATGCTTAATAGTTCTCCTAAATTGCAAATTCTAAAGCTCCTCAGTCCAAAGTATCAAAGTTGGAAAAAAGATGTTGTTGGGAAATGGAATAAGCCAAAGATTGTTCCTGAATGTTTATTGTTTCACCTCGAGACGTTCATGTGGAAAGGATACGAATGGAAACGAAACGATGAGACCGAAGTGGCGAAATACATCCTAAGTAACACAAATCGTTTGAAGAGAGCAACTTTCTTCTCAAAACCCATCAGTTCTGAAGAGAGAGTTAAAATGGTTAAGAATTTGAATAGTGTGGTCAGGGCTTTGAATTCATGTCAGCTTCTCATTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD LRR_2

Protein Analysis

423

Amino Acids

48.26

Weight (kDa)

9.4

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 51 1e-05 F-box domain
LRR_2 PF07723 156 - 181 7.1e-08 Leucine Rich Repeat
FBD PF08387 346 - 391 2.2e-17 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05080 AT1G19410 AT1G22000 AT1G26815 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G26890 AT1G32375 AT1G32375 AT1G50980 AT1G51055 AT1G55030 AT1G55030 AT1G55660 AT1G55660 AT2G04230 AT2G26860 AT2G26860 AT3G10750 AT3G26920 AT3G26920 AT3G26920 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26922 AT3G26930 AT3G26930 AT3G49020 AT3G49030 AT3G49030 AT3G49040 AT3G49045 AT3G49480 AT3G49480 AT3G50710 AT3G51530 AT3G52680 AT3G52680 AT3G52690 AT3G53550 AT3G54910 AT3G54910 AT3G54910 AT3G55670 AT4G00160 AT4G00315 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G09920 AT4G10400 AT4G10400 AT4G10400 AT4G10410 AT4G10420 AT4G13965 AT4G15060 AT4G15060 AT4G15075 AT4G26340 AT4G26350 AT5G11370 AT5G38565 AT5G38570 AT5G38580 AT5G38590 AT5G38590 AT5G38590 AT5G38590 AT5G40750 AT5G44850 AT5G50270 AT5G50270 AT5G52460 AT5G52460 AT5G56325 AT5G56370 AT5G56370 AT5G56370 AT5G56380 AT5G56380 AT5G56390 AT5G56400 AT5G56410 AT5G56420 AT5G56420 AT5G56420 AT5G56430 AT5G56440 AT5G56452 AT5G56452 AT5G56555 AT5G56560 AT5G56560 AT5G56570 AT5G56690 AT5G56700 AT5G56700 AT5G56800 AT5G56810 AT5G56810 AT5G56820 AT5G60610 AT5G60610 AT5G62970
malus_domestica MD10G1316000.v1.1
prunus_persica Prupe.4G024600_v2.0.a1
pyrus_communis pycom10g26820
rosa_chinensis RchiOBHm_Chr1g0383101 RchiOBHm_Chr5g0003811 RchiOBHm_Chr5g0069761 RchiOBHm_Chr5g0069771 RchiOBHm_Chr5g0069781 RchiOBHm_Chr5g0069791 RchiOBHm_Chr5g0069821 RchiOBHm_Chr5g0069831
rosa_laevigata RLG00000026130 RLG00000026375 RLG00000031193 RLG00000036088 RLG00000036089 RLG00000036090 RLG00000036095 RLG00000036096 RLG00000036097 RLG00000036099 RLG00000036100
rosa_multiflora Rmu_co8192842.1_g000001 Rmu_co8209784.1_g000001 Rmu_sc0000726.1_g000001 Rmu_sc0000726.1_g000003 Rmu_sc0000726.1_g000007 Rmu_sc0000726.1_g000008 Rmu_sc0000738.1_g000009 Rmu_sc0000738.1_g000010 Rmu_sc0000738.1_g000011 Rmu_sc0000738.1_g000015 Rmu_sc0000738.1_g000018 Rmu_sc0000738.1_g000019 Rmu_sc0004212.1_g000009 Rmu_sc0017283.1_g000003 Rmu_sc0024481.1_g000001
rosa_roxburghii Rroxscaffold_1G00011240 Rroxscaffold_1G00011270 Rroxscaffold_1G00011280 Rroxscaffold_1G00011300 Rroxscaffold_1G00011310 Rroxscaffold_1G00011320 Rroxscaffold_4G00277590
rosa_rugosa Rorug01G0413100 Rorug01G0438500 Rorug01G0438600 Rorug04G0406800 Rorug05G0399300 Rorug05G0399400 Rorug05G0399500 Rorug05G0399600 Rorug05G0399700 Rorug05G0399900.1 Rorug05G0400000 Rorug05G0400100
rosa_samantha Rh1AG436100 Rh1AG464200 Rh1BG421500 Rh1CG434900 Rh1DG454100 Rh5AG034000 Rh5AG034100 Rh5AG456400 Rh5AG456500 Rh5AG456600 Rh5AG456800 Rh5AG457000 Rh5BG032600 Rh5BG475500 Rh5BG475600 Rh5BG475800 Rh5BG475900 Rh5CG036600 Rh5CG036700 Rh5CG499100 Rh5CG499200 Rh5CG499400 Rh5CG499600 Rh5DG032800 Rh5DG487000 Rh5DG487100 Rh5DG487200 Rh5DG487400 Rh5DG487500
rosa_wichuraiana Rw5G003130 Rw5G042610 Rw5G042630 Rw5G042650 Rw5G042660 Rw5G042670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 658, 660
AciI CCGC 3 cut(s) 26, 605, 656
AclWI GGATC 2 cut(s) 41, 647
AcsI RAATTY 6 cut(s) 185, 676, 836, 969, 1219, 1246
AcuI CTGAAG 2 cut(s) 798, 1215
AdeI CACNNNGTG 1 cut(s) 493
AfaI GTAC 3 cut(s) 345, 646, 741
AfiI CCNNNNNNNGG 1 cut(s) 662
AluBI AGCT 7 cut(s) 384, 518, 748, 886, 901, 979, 1258
AluI AGCT 7 cut(s) 384, 518, 748, 886, 901, 979, 1258
Alw26I GTCTC 4 cut(s) 172, 616, 1067, 1109
AlwI GGATC 2 cut(s) 41, 647
AlwNI CAGNNNCTG 2 cut(s) 70, 133
Ama87I CYCGRG 1 cut(s) 1070
ApoI RAATTY 6 cut(s) 185, 676, 836, 969, 1219, 1246
AspLEI GCGC 2 cut(s) 660, 662
AsuHPI GGTGA 2 cut(s) 834, 1058
AvaI CYCGRG 1 cut(s) 1070
AxyI CCTNAGG 1 cut(s) 48
BanII GRGCYC 1 cut(s) 220
BauI CACGAG 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 596
BccI CCATC 2 cut(s) 350, 1193
BciVI GTATCC 1 cut(s) 1085
BcoDI GTCTC 4 cut(s) 172, 616, 1067, 1109
BfaI CTAG 1 cut(s) 404
BfmI CTRYAG 1 cut(s) 84
BfuI GTATCC 1 cut(s) 1085
BmcAI AGTACT 1 cut(s) 646
BmeT110I CYCGRG 1 cut(s) 1070
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 2 cut(s) 265, 574
BpiI GAAGAC 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 404
Bsa29I ATCGAT 1 cut(s) 568
BsaI GGTCTC 1 cut(s) 1109
BsaJI CCNNGG 1 cut(s) 411
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse21I CCTNAGG 1 cut(s) 48
Bse3DI GCAATG 2 cut(s) 128, 312
BseCI ATCGAT 1 cut(s) 568
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 3 cut(s) 445, 611, 1134
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMI GCAATG 2 cut(s) 128, 312
BseMII CTCAG 3 cut(s) 39, 791, 997
BsePI GCGCGC 1 cut(s) 658
BseRI GAGGAG 1 cut(s) 971
BsgI GTGCAG 1 cut(s) 464
Bsh1236I CGCG 2 cut(s) 658, 660
BshVI ATCGAT 1 cut(s) 568
BsiHKCI CYCGRG 1 cut(s) 1070
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 2 cut(s) 375, 428
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 4 cut(s) 172, 616, 1067, 1109
BsmBI CGTCTC 1 cut(s) 1067
BsmFI GGGAC 2 cut(s) 375, 428
BsmI GAATGC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 1109
BsoBI CYCGRG 1 cut(s) 1070
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 3 cut(s) 33, 172, 652
BspACI CCGC 3 cut(s) 26, 605, 656
BspCNI CTCAG 3 cut(s) 40, 790, 996
BspDI ATCGAT 1 cut(s) 568
BspFNI CGCG 2 cut(s) 658, 660
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 2 cut(s) 41, 647
BspTNI GGTCTC 1 cut(s) 1109
BsrDI GCAATG 2 cut(s) 128, 312
BssECI CCNNGG 1 cut(s) 411
BssHII GCGCGC 1 cut(s) 658
BssMI GATC 3 cut(s) 33, 172, 652
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 103
Bst4CI ACNGT 3 cut(s) 72, 395, 649
Bst6I CTCTTC 2 cut(s) 1154, 1191
BstAPI GCANNNNNTGC 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 325, 660
BstDEI CTNAG 7 cut(s) 48, 117, 470, 777, 832, 983, 1139
BstF5I GGATG 3 cut(s) 445, 611, 1134
BstFNI CGCG 2 cut(s) 658, 660
BstHHI GCGC 2 cut(s) 660, 662
BstKTI GATC 3 cut(s) 36, 175, 655
BstMAI GTCTC 4 cut(s) 172, 616, 1067, 1109
BstMBI GATC 3 cut(s) 33, 172, 652
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 2 cut(s) 658, 660
BstV2I GAAGAC 1 cut(s) 596
Bsu15I ATCGAT 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 48
BsuI GTATCC 1 cut(s) 1085
BsuTUI ATCGAT 1 cut(s) 568
BtsCI GGATG 3 cut(s) 445, 611, 1134
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 589
Cac8I GCNNGC 2 cut(s) 325, 660
CaiI CAGNNNCTG 2 cut(s) 70, 133
CfoI GCGC 2 cut(s) 660, 662
ClaI ATCGAT 1 cut(s) 568
CseI GACGC 1 cut(s) 372
Csp6I GTAC 3 cut(s) 344, 645, 740
CviAII CATG 4 cut(s) 182, 911, 1081, 1251
CviQI GTAC 3 cut(s) 344, 645, 740
DdeI CTNAG 7 cut(s) 48, 117, 470, 777, 832, 983, 1139
DpnI GATC 3 cut(s) 35, 174, 654
DpnII GATC 3 cut(s) 33, 172, 652
DraIII CACNNNGTG 1 cut(s) 493
Eam1104I CTCTTC 2 cut(s) 1154, 1191
EarI CTCTTC 2 cut(s) 1154, 1191
Eco130I CCWWGG 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 1109
Eco32I GATATC 1 cut(s) 572
Eco57I CTGAAG 2 cut(s) 798, 1215
Eco81I CCTNAGG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 1070
EcoRI GAATTC 3 cut(s) 185, 836, 1246
EcoRV GATATC 1 cut(s) 572
EcoT14I CCWWGG 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 411
Esp3I CGTCTC 1 cut(s) 1067
FaeI CATG 4 cut(s) 185, 914, 1084, 1254
FaqI GGGAC 2 cut(s) 375, 428
FatI CATG 4 cut(s) 181, 910, 1080, 1250
FokI GGATG 3 cut(s) 452, 598, 1121
FriOI GRGCYC 1 cut(s) 220
FspBI CTAG 1 cut(s) 404
GlaI GCGC 2 cut(s) 659, 661
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 372
HhaI GCGC 2 cut(s) 660, 662
Hin1II CATG 4 cut(s) 185, 914, 1084, 1254
Hin6I GCGC 2 cut(s) 658, 660
HinP1I GCGC 2 cut(s) 658, 660
HindIII AAGCTT 1 cut(s) 382
HinfI GANTC 5 cut(s) 164, 430, 512, 803, 928
HpaII CCGG 1 cut(s) 239
HphI GGTGA 2 cut(s) 834, 1058
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 6 cut(s) 66, 177, 462, 729, 780, 1195
Hpy188III TCNNGA 5 cut(s) 377, 548, 800, 1049, 1072
Hpy8I GTNNAC 1 cut(s) 496
HpyAV CCTTC 4 cut(s) 456, 494, 693, 806
HpyCH4III ACNGT 3 cut(s) 72, 395, 649
HpyCH4IV ACGT 3 cut(s) 738, 823, 1076
HpyCH4V TGCA 8 cut(s) 247, 256, 299, 317, 327, 481, 565, 967
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 7 cut(s) 48, 117, 470, 777, 832, 983, 1139
HpySE526I ACGT 3 cut(s) 738, 823, 1076
Hsp92II CATG 4 cut(s) 185, 914, 1084, 1254
HspAI GCGC 2 cut(s) 658, 660
Kzo9I GATC 3 cut(s) 33, 172, 652
LmnI GCTCC 3 cut(s) 241, 898, 984
LweI GCATC 2 cut(s) 265, 574
MaeI CTAG 1 cut(s) 404
MaeII ACGT 3 cut(s) 738, 823, 1076
MaeIII GTNAC 2 cut(s) 97, 1142
MalI GATC 3 cut(s) 35, 174, 654
MboI GATC 3 cut(s) 33, 172, 652
MboII GAAGA 8 cut(s) 151, 441, 601, 712, 868, 1165, 1171, 1208
MhlI GDGCHC 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 983
MnlI CCTC 6 cut(s) 5, 43, 748, 784, 992, 1079
MseI TTAA 9 cut(s) 210, 522, 617, 689, 855, 948, 1206, 1215, 1266
MspA1I CMGCKG 1 cut(s) 886
MspI CCGG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 28
MvnI CGCG 2 cut(s) 658, 660
MwoI GCNNNNNNNGC 1 cut(s) 253
NdeII GATC 3 cut(s) 33, 172, 652
NlaIII CATG 4 cut(s) 185, 914, 1084, 1254
NlaIV GGNNCC 1 cut(s) 237
PaeR7I CTCGAG 1 cut(s) 1070
PauI GCGCGC 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 1116
PctI GAATGC 1 cut(s) 28
PfeI GAWTC 5 cut(s) 164, 430, 512, 803, 928
PspN4I GGNNCC 1 cut(s) 237
PstNI CAGNNNCTG 2 cut(s) 70, 133
PteI GCGCGC 1 cut(s) 658
PvuII CAGCTG 1 cut(s) 886
RsaI GTAC 3 cut(s) 345, 646, 741
RsaNI GTAC 3 cut(s) 344, 645, 740
SaqAI TTAA 9 cut(s) 210, 522, 617, 689, 855, 948, 1206, 1215, 1266
Sau3AI GATC 3 cut(s) 33, 172, 652
ScaI AGTACT 1 cut(s) 646
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 2 cut(s) 265, 574
SfcI CTRYAG 1 cut(s) 84
Sfr274I CTCGAG 1 cut(s) 1070
SlaI CTCGAG 1 cut(s) 1070
SmlI CTYRAG 2 cut(s) 419, 1070
SmoI CTYRAG 2 cut(s) 419, 1070
SsiI CCGC 3 cut(s) 26, 605, 656
SspMI CTAG 1 cut(s) 404
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 3 cut(s) 72, 395, 649
TaiI ACGT 3 cut(s) 741, 826, 1079
TaqI TCGA 6 cut(s) 10, 348, 428, 452, 568, 1071
TaqII GACCGA 1 cut(s) 1133
TatI WGTACW 1 cut(s) 644
TfiI GAWTC 5 cut(s) 164, 430, 512, 803, 928
Tru1I TTAA 9 cut(s) 210, 522, 617, 689, 855, 948, 1206, 1215, 1266
Tru9I TTAA 9 cut(s) 210, 522, 617, 689, 855, 948, 1206, 1215, 1266
TscAI CASTG 1 cut(s) 589
TspDTI ATGAA 7 cut(s) 198, 257, 305, 525, 927, 1069, 1239
TspRI CASTG 1 cut(s) 589
XapI RAATTY 6 cut(s) 185, 676, 836, 969, 1219, 1246
XhoI CTCGAG 1 cut(s) 1070
XspI CTAG 1 cut(s) 404
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.