Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010886

Physical Location & Seq

Genomic Coordinates Reverse (-)

29063554 .. 29067476

Gene Structure 3923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G304400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCTAGTCAAAACGACGTCACGGGCATCTGGCACGCGCACTCCGCGCGCTTTCTCTCCATCCAACCCTCCCAATTCTAGGGTTAGGGATTGTCTGAAGACTCGTTGGATCAGATTGTTCACTCAATTTTCAATTCCAGCTAGGCCTCAATTCAATAACAAGGTGGAAGCCATGGAAGCATCTCAGCCTCTTTCCATTGAAAGCTTTTCATACAGTTGGTTAGTGAACCTGAAACCTTCTTTGGAAAGCCTTGACAATTCTCTCAGAACCTCACTCGATGCGTCCGATGAATCTTCCTTCATCGAGATGGACCCAACAATGTCACCCTCTAAGAGATTCTTTATGAATTCCCAGCAGGATTTCAAATTTGACTTCCCTGCTGTCTCCCAATCTCCTCTCACCACTCTTGTTCATGCTGATGAGCTCATTTCCAATGGCTACCTTTTGCCGCTTTCTGTTGACTCATTGAAGAACATGGAGGCATATGATCATGAGGCCTCAAAGTCCACTGGTGCAAATTTTCCGGCCTCTGCATCACATTCAGCAAGAGATGTTGATCCAACAGATAATTCTAGAGACTCCTCTAATTCATTGAGAAGGTGTAGAAGATTGTCGAGACGAATATTGGAGAAGTACTTGAATTTTCTTAGGCCGTTGTACAAAAAGATTAGAGGTGATCATCATCATCATCATCATCACAAAGCAAATCCTAAAGCTGGATTTAGTGCTGATAAAAGGAGCCATTCAGTGAAGAACTGCAGGGTGCATTCATCAGACACTAGTCAATCTCCCAGAATAAGTGTAGCCTATTCTGCCGATGATTGGCGGAGGTCTTGTGATTCCGAGAGCTCAATTTATGAGGCAGTTCTCCATTGCAAAAGATCCATAGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

33.77

Weight (kDa)

9.47

Isoelectric Point (pI)

61.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52900
fragaria_vesca	FvH4_7g30650
malus_domestica	MD01G1211600.v1.1 MD07G1282200.v1.1
prunus_persica	Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1
pyrus_communis	pycom01g22210 pycom07g25610
rosa_chinensis	RchiOBHm_Chr1g0379591
rosa_laevigata	RLG00000026392
rosa_multiflora	Rmu_sc0011286.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280060
rosa_rugosa	Rorug01G0413100
rosa_samantha	Rh1AG436300 Rh1BG393300 Rh1CG406100 Rh1DG424200
rosa_wichuraiana	Rw1G038090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	20
AccII	CGCG	3 cut(s)	37, 46, 48
AciI	CCGC	3 cut(s)	44, 449, 826
AclWI	GGATC	3 cut(s)	116, 551, 876
AcsI	RAATTY	4 cut(s)	346, 365, 517, 640
AcuI	CTGAAG	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	2 cut(s)	635, 659
AfiI	CCNNNNNNNGG	3 cut(s)	78, 716, 822
AgsI	TTSAA	6 cut(s)	132, 154, 200, 364, 469, 640
AhlI	ACTAGT	1 cut(s)	779
AjuI	GAANNNNNNNTTGG	4 cut(s)	224, 256, 553, 585
AluBI	AGCT	5 cut(s)	140, 204, 424, 716, 849
AluI	AGCT	5 cut(s)	140, 204, 424, 716, 849
Alw21I	GWGCWC	2 cut(s)	426, 851
Alw26I	GTCTC	3 cut(s)	388, 570, 610
AlwI	GGATC	3 cut(s)	116, 551, 876
AoxI	GGCC	4 cut(s)	143, 495, 525, 650
ApoI	RAATTY	4 cut(s)	346, 365, 517, 640
AspLEI	GCGC	3 cut(s)	39, 48, 50
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	3 cut(s)	315, 391, 686
AvaII	GGWCC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	426, 851
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	2 cut(s)	426, 851
BccI	CCATC	2 cut(s)	67, 301
BceAI	ACGGC	1 cut(s)	637
BclI	TGATCA	2 cut(s)	487, 676
BcoDI	GTCTC	3 cut(s)	388, 570, 610
BcuI	ACTAGT	1 cut(s)	779
BfaI	CTAG	5 cut(s)	5, 78, 141, 573, 780
BfmI	CTRYAG	1 cut(s)	757
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
BmcAI	AGTACT	1 cut(s)	635
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	312, 740
BmsI	GCATC	4 cut(s)	35, 188, 268, 542
BoxI	GACNNNNGTC	1 cut(s)	780
BpiI	GAAGAC	1 cut(s)	104
BsaBI	GATNNNNATC	2 cut(s)	555, 681
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 820, 850
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 716, 822
Bse1I	ACTGG	1 cut(s)	514
Bse3DI	GCAATG	1 cut(s)	871
Bse8I	GATNNNNATC	2 cut(s)	555, 681
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	59
BseJI	GATNNNNATC	2 cut(s)	555, 681
BseLI	CCNNNNNNNGG	3 cut(s)	78, 716, 822
BseMI	GCAATG	1 cut(s)	871
BseMII	CTCAG	2 cut(s)	197, 277
BseNI	ACTGG	1 cut(s)	514
BsePI	GCGCGC	1 cut(s)	46
BseRI	GAGGAG	2 cut(s)	384, 571
BseYI	CCCAGC	1 cut(s)	351
Bsh1236I	CGCG	3 cut(s)	37, 46, 48
BshFI	GGCC	4 cut(s)	145, 497, 527, 652
BsiHKAI	GWGCWC	2 cut(s)	426, 851
BsiSI	CCGG	1 cut(s)	524
BslI	CCNNNNNNNGG	3 cut(s)	78, 716, 822
BsmAI	GTCTC	3 cut(s)	388, 570, 610
BsmBI	CGTCTC	1 cut(s)	610
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	4 cut(s)	145, 497, 527, 652
Bsp1286I	GDGCHC	2 cut(s)	426, 851
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	5 cut(s)	108, 487, 556, 676, 881
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	3 cut(s)	44, 449, 826
BspANI	GGCC	4 cut(s)	145, 497, 527, 652
BspCNI	CTCAG	2 cut(s)	196, 276
BspFNI	CGCG	3 cut(s)	37, 46, 48
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	2 cut(s)	312, 740
BspMAI	CTGCAG	1 cut(s)	761
BspPI	GGATC	3 cut(s)	116, 551, 876
BsrDI	GCAATG	1 cut(s)	871
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	1 cut(s)	171
BssHII	GCGCGC	1 cut(s)	46
BssMI	GATC	5 cut(s)	108, 487, 556, 676, 881
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	657
BstC8I	GCNNGC	2 cut(s)	35, 48
BstDEI	CTNAG	4 cut(s)	183, 263, 330, 647
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	3 cut(s)	37, 46, 48
BstHHI	GCGC	3 cut(s)	39, 48, 50
BstKTI	GATC	5 cut(s)	111, 490, 559, 679, 884
BstMAI	GTCTC	3 cut(s)	388, 570, 610
BstMBI	GATC	5 cut(s)	108, 487, 556, 676, 881
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 45, 176, 812
BstPAI	GACNNNNGTC	1 cut(s)	780
BstSFI	CTRYAG	1 cut(s)	757
BstUI	CGCG	3 cut(s)	37, 46, 48
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	881
BstYI	RGATCY	1 cut(s)	881
BsuRI	GGCC	4 cut(s)	145, 497, 527, 652
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	507, 753
Cac8I	GCNNGC	2 cut(s)	35, 48
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	3 cut(s)	39, 48, 50
Cfr13I	GGNCC	1 cut(s)	310
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	634, 658
CviAII	CATG	4 cut(s)	172, 413, 475, 491
CviQI	GTAC	2 cut(s)	634, 658
DdeI	CTNAG	4 cut(s)	183, 263, 330, 647
DpnI	GATC	5 cut(s)	110, 489, 558, 678, 883
DpnII	GATC	5 cut(s)	108, 487, 556, 676, 881
EciI	GGCGGA	1 cut(s)	841
Ecl136II	GAGCTC	2 cut(s)	424, 849
Eco130I	CCWWGG	1 cut(s)	171
Eco147I	AGGCCT	2 cut(s)	145, 497
Eco24I	GRGCYC	2 cut(s)	426, 851
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	2 cut(s)	424, 849
Eco57I	CTGAAG	1 cut(s)	116
EcoICRI	GAGCTC	2 cut(s)	424, 849
EcoRI	GAATTC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	426, 851
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	610
FaeI	CATG	4 cut(s)	175, 416, 478, 494
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FatI	CATG	4 cut(s)	171, 412, 474, 490
FauNDI	CATATG	1 cut(s)	484
FbaI	TGATCA	2 cut(s)	487, 676
Fnu4HI	GCNGC	1 cut(s)	449
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	2 cut(s)	426, 851
Fsp4HI	GCNGC	1 cut(s)	449
FspBI	CTAG	5 cut(s)	5, 78, 141, 573, 780
GlaI	GCGC	3 cut(s)	38, 47, 49
GluI	GCNGC	1 cut(s)	449
GsaI	CCCAGC	1 cut(s)	355
HaeIII	GGCC	4 cut(s)	145, 497, 527, 652
HapII	CCGG	1 cut(s)	524
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	3 cut(s)	39, 48, 50
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	4 cut(s)	175, 416, 478, 494
Hin6I	GCGC	3 cut(s)	37, 46, 48
HinP1I	GCGC	3 cut(s)	37, 46, 48
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	6 cut(s)	100, 290, 336, 461, 578, 839
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	3 cut(s)	315, 391, 686
Hpy166II	GTNNAC	4 cut(s)	120, 226, 460, 507
Hpy188I	TCNGA	6 cut(s)	96, 113, 266, 286, 775, 844
Hpy188III	TCNNGA	4 cut(s)	304, 491, 573, 615
Hpy8I	GTNNAC	4 cut(s)	120, 226, 460, 507
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	3 cut(s)	246, 307, 591
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	5 cut(s)	515, 533, 759, 766, 876
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 45, 176, 812
HpyF3I	CTNAG	4 cut(s)	183, 263, 330, 647
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	175, 416, 478, 494
HspAI	GCGC	3 cut(s)	37, 46, 48
Ksp22I	TGATCA	2 cut(s)	487, 676
Kzo9I	GATC	5 cut(s)	108, 487, 556, 676, 881
LmnI	GCTCC	1 cut(s)	738
LweI	GCATC	4 cut(s)	35, 188, 268, 542
MaeI	CTAG	5 cut(s)	5, 78, 141, 573, 780
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	18, 321
MalI	GATC	5 cut(s)	110, 489, 558, 678, 883
MboI	GATC	5 cut(s)	108, 487, 556, 676, 881
MboII	GAAGA	5 cut(s)	109, 285, 481, 618, 763
MflI	RGATCY	1 cut(s)	881
MhlI	GDGCHC	2 cut(s)	426, 851
MlyI	GAGTC	3 cut(s)	94, 455, 572
MmeI	TCCRAC	3 cut(s)	86, 87, 584
MseI	TTAA	1 cut(s)	895
MslI	CAYNNNNRTG	2 cut(s)	305, 417
MspI	CCGG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	766
MvnI	CGCG	3 cut(s)	37, 46, 48
MwoI	GCNNNNNNNGC	4 cut(s)	43, 45, 176, 812
NcoI	CCATGG	1 cut(s)	171
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	5 cut(s)	108, 487, 556, 676, 881
NlaIII	CATG	4 cut(s)	175, 416, 478, 494
NlaIV	GGNNCC	2 cut(s)	312, 740
NmuCI	GTSAC	2 cut(s)	18, 321
PagI	TCATGA	1 cut(s)	490
PauI	GCGCGC	1 cut(s)	46
PceI	AGGCCT	2 cut(s)	145, 497
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PctI	GAATGC	1 cut(s)	766
PfeI	GAWTC	3 cut(s)	290, 336, 839
PkrI	GCNGC	1 cut(s)	450
PleI	GAGTC	3 cut(s)	94, 455, 572
PpsI	GAGTC	3 cut(s)	94, 455, 572
PshAI	GACNNNNGTC	1 cut(s)	780
Psp124BI	GAGCTC	2 cut(s)	426, 851
PspFI	CCCAGC	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	312, 740
PspPI	GGNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	881
PteI	GCGCGC	1 cut(s)	46
RsaI	GTAC	2 cut(s)	635, 659
RsaNI	GTAC	2 cut(s)	634, 658
RseI	CAYNNNNRTG	2 cut(s)	305, 417
SacI	GAGCTC	2 cut(s)	426, 851
SaqAI	TTAA	1 cut(s)	895
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	5 cut(s)	108, 487, 556, 676, 881
Sau96I	GGNCC	1 cut(s)	310
ScaI	AGTACT	1 cut(s)	635
SchI	GAGTC	3 cut(s)	94, 455, 572
SduI	GDGCHC	2 cut(s)	426, 851
SfaNI	GCATC	4 cut(s)	35, 188, 268, 542
SfcI	CTRYAG	1 cut(s)	757
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	2 cut(s)	305, 417
SpeI	ACTAGT	1 cut(s)	779
SseBI	AGGCCT	2 cut(s)	145, 497
SsiI	CCGC	3 cut(s)	44, 449, 826
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	5 cut(s)	5, 78, 141, 573, 780
SstI	GAGCTC	2 cut(s)	426, 851
StuI	AGGCCT	2 cut(s)	145, 497
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	3 cut(s)	276, 303, 614
TatI	WGTACW	2 cut(s)	633, 657
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	3 cut(s)	290, 336, 839
Tru1I	TTAA	1 cut(s)	895
Tru9I	TTAA	1 cut(s)	895
TscAI	CASTG	2 cut(s)	514, 753
TseFI	GTSAC	2 cut(s)	18, 321
Tsp45I	GTSAC	2 cut(s)	18, 321
TspDTI	ATGAA	7 cut(s)	198, 289, 303, 359, 401, 579, 759
TspRI	CASTG	2 cut(s)	514, 753
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	4 cut(s)	346, 365, 517, 640
XbaI	TCTAGA	1 cut(s)	572
XspI	CTAG	5 cut(s)	5, 78, 141, 573, 780
ZraI	GACGTC	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.