Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010886

Physical Location & Seq

Genomic Coordinates Reverse (-)

25894843 .. 25896196

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCATGAATCTGCTTGCCTTGTACACAAATATCTTACTACACTACATTATAGATGCGTGGGGGCTCACATTTCTCTGTTTCTTTCCTCCTTTTCTCTTTTCCAAATTATCAAAACTCAGTGTCTCTTGCCAGACAACCACATATGCAATTGTTGGAGAGAGAGAAGGAGAGGAGAGAAGGAGGATATTAATGTATATATATGCAGTAGAAGATATGTTCCACATGTAAGAGTGCCTGGCCTGCTAGAAATTAGTAAATTCTCCTGCCTCTTTATATGTTCATATCTTTCTCATACAAGTTTGAAAGCCATGGAAGCGTCCCGGCCTCTTTCCATTGAAAGCTTTTCATACAGTTGGTTAGTAAACCTTAAACCAGCTTCTCTGGAGAGCCTTGACAACTCTCTCAGAACCTCGCTTGATGCGTCTGATGAATCTTCCTTCATCGAGATGGACCCAACAATGCCACCCTCTCAGAGATTCTTTATGAATTCCCAGCAGGATTTCAAATTTGACTTCCCTGCTGCCATTTCACAATCTCCTCTCACTACCCTAGTTCATGCCGATGAGCTCATTTCCAACGGCTACCTTTTGCCTCTTTCTGTTGAGTCCTTAATGAAGATGGAAGCATATCATTGTGACGAGGCCTCAAATTTCACTCCAGTCCCTTCACATTTACAAAAAGATGCTGCTCCAACTGATAATCATAATTCTAGATATTGCTCTAAATCATTGAGGAGGTGTAGAAGATTGTCACGACGAATATTCGAGAAGTACTTGAACTTTCTTAGGCCCTTGTATAGAAGGATTAGAGGTGGCCACAACCATCATCACAAAGCGAATCCTAAAGGTGGAAATCTTGATAAAAGGAGCCATTCGGTAAAAAACTGCAGGGTGCATTCATCGGAAACTAGTCAATCCCCAAGAATAAGTGTAGCATATTCAGCCGATGATTGGCGGATGTCTTGTGATTCTGAGAGCTCAATCTATGAGGCAGTTCTCCATTGCAAAAGATCCATAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

39.19

Weight (kDa)

8.95

Isoelectric Point (pI)

69.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52900
fragaria_vesca	FvH4_7g30650
malus_domestica	MD01G1211600.v1.1 MD07G1282200.v1.1
prunus_persica	Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1
pyrus_communis	pycom01g22210 pycom07g25610
rosa_chinensis	RchiOBHm_Chr1g0379591
rosa_laevigata	RLG00000026392
rosa_multiflora	Rmu_sc0011286.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280060
rosa_rugosa	Rorug01G0413100
rosa_samantha	Rh1AG436300 Rh1BG393300 Rh1CG406100 Rh1DG424200
rosa_wichuraiana	Rw1G038090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	955
AclWI	GGATC	1 cut(s)	1005
AcoI	YGGCCR	1 cut(s)	814
AcsI	RAATTY	4 cut(s)	257, 487, 506, 649
AfaI	GTAC	2 cut(s)	24, 773
AfiI	CCNNNNNNNGG	2 cut(s)	848, 951
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	304, 338, 505, 778
AhlI	ACTAGT	1 cut(s)	908
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	4 cut(s)	342, 377, 568, 978
AluI	AGCT	4 cut(s)	342, 377, 568, 978
Alw21I	GWGCWC	2 cut(s)	570, 980
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	1005
AoxI	GGCC	5 cut(s)	238, 323, 642, 788, 814
ApeKI	GCWGC	2 cut(s)	521, 686
ApoI	RAATTY	4 cut(s)	257, 487, 506, 649
AseI	ATTAAT	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	451, 789
AsuC2I	CCSGG	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	816
BanII	GRGCYC	3 cut(s)	67, 570, 980
Bbv12I	GWGCWC	2 cut(s)	570, 980
BbvI	GCAGC	2 cut(s)	508, 673
BccI	CCATC	3 cut(s)	442, 613, 831
BceAI	ACGGC	1 cut(s)	595
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	908
BfaI	CTAG	4 cut(s)	245, 551, 711, 909
BfmI	CTRYAG	1 cut(s)	886
BisI	GCNGC	2 cut(s)	522, 687
BlsI	GCNGC	2 cut(s)	523, 688
BmcAI	AGTACT	1 cut(s)	773
Bme1390I	CCNGG	2 cut(s)	237, 322
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	451, 789
BmiI	GGNNCC	2 cut(s)	453, 869
BmrFI	CCNGG	2 cut(s)	237, 322
BmsI	GCATC	3 cut(s)	44, 409, 673
BpmI	CTGGAG	2 cut(s)	404, 642
BpuMI	CCSGG	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	848, 951
Bse1I	ACTGG	1 cut(s)	659
Bse3DI	GCAATG	1 cut(s)	1000
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	963
BseLI	CCNNNNNNNGG	2 cut(s)	848, 951
BseMI	GCAATG	1 cut(s)	1000
BseMII	CTCAG	4 cut(s)	131, 418, 485, 963
BseNI	ACTGG	1 cut(s)	659
BseRI	GAGGAG	3 cut(s)	186, 528, 748
BseXI	GCAGC	2 cut(s)	508, 673
BseYI	CCCAGC	1 cut(s)	492
BshFI	GGCC	5 cut(s)	240, 325, 644, 790, 816
BsiHKAI	GWGCWC	2 cut(s)	570, 980
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	2 cut(s)	304, 647
BslI	CCNNNNNNNGG	2 cut(s)	848, 951
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	304, 647
BsmI	GAATGC	1 cut(s)	895
BsnI	GGCC	5 cut(s)	240, 325, 644, 790, 816
Bsp1286I	GDGCHC	3 cut(s)	67, 570, 980
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	1010
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	1 cut(s)	955
BspANI	GGCC	5 cut(s)	240, 325, 644, 790, 816
BspCNI	CTCAG	4 cut(s)	130, 417, 484, 964
BspLI	GGNNCC	2 cut(s)	453, 869
BspMAI	CTGCAG	1 cut(s)	890
BspPI	GGATC	1 cut(s)	1005
BsrDI	GCAATG	1 cut(s)	1000
BsrGI	TGTACA	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	659
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	1010
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	16, 242
BstDEI	CTNAG	5 cut(s)	117, 404, 471, 785, 972
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	963
BstKTI	GATC	1 cut(s)	1013
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	1010
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 314, 941
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	235, 320
BstSFI	CTRYAG	1 cut(s)	886
BstV1I	GCAGC	2 cut(s)	508, 673
BstX2I	RGATCY	1 cut(s)	1010
BstYI	RGATCY	1 cut(s)	1010
BsuRI	GGCC	5 cut(s)	240, 325, 644, 790, 816
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	963
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	16, 242
Cfr13I	GGNCC	2 cut(s)	451, 789
CseI	GACGC	2 cut(s)	306, 411
Csp6I	GTAC	2 cut(s)	23, 772
CviAII	CATG	4 cut(s)	5, 224, 310, 557
CviQI	GTAC	2 cut(s)	23, 772
DdeI	CTNAG	5 cut(s)	117, 404, 471, 785, 972
DpnI	GATC	1 cut(s)	1012
DpnII	GATC	1 cut(s)	1010
EaeI	YGGCCR	1 cut(s)	814
EciI	GGCGGA	1 cut(s)	970
Ecl136II	GAGCTC	2 cut(s)	568, 978
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	644
Eco24I	GRGCYC	3 cut(s)	67, 570, 980
Eco47I	GGWCC	1 cut(s)	451
Eco53kI	GAGCTC	2 cut(s)	568, 978
EcoICRI	GAGCTC	2 cut(s)	568, 978
EcoO109I	RGGNCCY	1 cut(s)	789
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	67, 570, 980
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	4 cut(s)	8, 227, 313, 560
FaqI	GGGAC	2 cut(s)	304, 647
FatI	CATG	4 cut(s)	4, 223, 309, 556
FauNDI	CATATG	1 cut(s)	143
Fnu4HI	GCNGC	2 cut(s)	522, 687
FokI	GGATG	1 cut(s)	970
FriOI	GRGCYC	3 cut(s)	67, 570, 980
Fsp4HI	GCNGC	2 cut(s)	522, 687
FspBI	CTAG	4 cut(s)	245, 551, 711, 909
GluI	GCNGC	2 cut(s)	522, 687
GsaI	CCCAGC	1 cut(s)	496
GsuI	CTGGAG	2 cut(s)	404, 642
HaeIII	GGCC	5 cut(s)	240, 325, 644, 790, 816
HapII	CCGG	1 cut(s)	322
HgaI	GACGC	2 cut(s)	306, 411
Hin1II	CATG	4 cut(s)	8, 227, 313, 560
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	6 cut(s)	8, 431, 477, 605, 838, 968
HpaII	CCGG	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	25, 364
Hpy188I	TCNGA	5 cut(s)	407, 427, 474, 904, 973
Hpy188III	TCNNGA	6 cut(s)	383, 445, 711, 753, 766, 857
Hpy8I	GTNNAC	2 cut(s)	25, 364
Hpy99I	CGWCG	1 cut(s)	759
HpyAV	CCTTC	5 cut(s)	159, 172, 448, 675, 795
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	6 cut(s)	4, 147, 204, 888, 895, 1005
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 314, 941
HpyF3I	CTNAG	5 cut(s)	117, 404, 471, 785, 972
Hsp92II	CATG	4 cut(s)	8, 227, 313, 560
Kzo9I	GATC	1 cut(s)	1010
LmnI	GCTCC	2 cut(s)	694, 867
Lsp1109I	GCAGC	2 cut(s)	508, 673
LweI	GCATC	3 cut(s)	44, 409, 673
MaeI	CTAG	4 cut(s)	245, 551, 711, 909
MaeIII	GTNAC	2 cut(s)	635, 750
MalI	GATC	1 cut(s)	1012
MboI	GATC	1 cut(s)	1010
MboII	GAAGA	4 cut(s)	222, 426, 628, 756
MfeI	CAATTG	1 cut(s)	148
MflI	RGATCY	1 cut(s)	1010
MhlI	GDGCHC	3 cut(s)	67, 570, 980
MlsI	TGGCCA	1 cut(s)	816
MluCI	AATT	8 cut(s)	105, 148, 249, 257, 487, 506, 649, 706
MluNI	TGGCCA	1 cut(s)	816
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	3 cut(s)	134, 600, 716
Mox20I	TGGCCA	1 cut(s)	816
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	816
MseI	TTAA	3 cut(s)	189, 369, 611
MslI	CAYNNNNRTG	2 cut(s)	446, 561
Msp20I	TGGCCA	1 cut(s)	816
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	237, 322
MunI	CAATTG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	241, 314, 941
NciI	CCSGG	1 cut(s)	322
NcoI	CCATGG	1 cut(s)	309
NdeI	CATATG	1 cut(s)	143
NdeII	GATC	1 cut(s)	1010
NlaIII	CATG	4 cut(s)	8, 227, 313, 560
NlaIV	GGNNCC	2 cut(s)	453, 869
NmuCI	GTSAC	2 cut(s)	635, 750
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	644
PciI	ACATGT	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PctI	GAATGC	1 cut(s)	895
PfeI	GAWTC	5 cut(s)	8, 431, 477, 838, 968
PkrI	GCNGC	2 cut(s)	523, 688
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PscI	ACATGT	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	189
Psp124BI	GAGCTC	2 cut(s)	570, 980
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	453, 869
PspPI	GGNCC	2 cut(s)	451, 789
PstI	CTGCAG	1 cut(s)	890
PsuI	RGATCY	1 cut(s)	1010
RsaI	GTAC	2 cut(s)	24, 773
RsaNI	GTAC	2 cut(s)	23, 772
RseI	CAYNNNNRTG	2 cut(s)	446, 561
SacI	GAGCTC	2 cut(s)	570, 980
SaqAI	TTAA	3 cut(s)	189, 369, 611
SatI	GCNGC	2 cut(s)	522, 687
Sau3AI	GATC	1 cut(s)	1010
Sau96I	GGNCC	2 cut(s)	451, 789
ScaI	AGTACT	1 cut(s)	773
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	2 cut(s)	237, 322
SduI	GDGCHC	3 cut(s)	67, 570, 980
SfaNI	GCATC	3 cut(s)	44, 409, 673
SfcI	CTRYAG	1 cut(s)	886
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	446, 561
SpeI	ACTAGT	1 cut(s)	908
Sse9I	AATT	8 cut(s)	105, 148, 249, 257, 487, 506, 649, 706
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	1 cut(s)	955
SspI	AATATT	1 cut(s)	762
SspMI	CTAG	4 cut(s)	245, 551, 711, 909
SstI	GAGCTC	2 cut(s)	570, 980
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	235, 320
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	2 cut(s)	444, 765
TasI	AATT	8 cut(s)	105, 148, 249, 257, 487, 506, 649, 706
TatI	WGTACW	2 cut(s)	22, 771
TfiI	GAWTC	5 cut(s)	8, 431, 477, 838, 968
Tru1I	TTAA	3 cut(s)	189, 369, 611
Tru9I	TTAA	3 cut(s)	189, 369, 611
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	2 cut(s)	635, 750
TseI	GCWGC	2 cut(s)	521, 686
Tsp45I	GTSAC	2 cut(s)	635, 750
TspDTI	ATGAA	9 cut(s)	21, 270, 336, 430, 444, 500, 545, 629, 888
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	451
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	4 cut(s)	257, 487, 506, 649
XbaI	TCTAGA	1 cut(s)	710
XceI	RCATGY	1 cut(s)	227
XspI	CTAG	4 cut(s)	245, 551, 711, 909
ZrmI	AGTACT	1 cut(s)	773
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.