Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010886

Physical Location & Seq

Genomic Coordinates Reverse (-)

19911446 .. 19912272

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAGCATCCCAGCCTCTTTCCATTGAAAGCTTTTCATATAGTTGGTTAGTAAACCTTAAACCAGCTTCTCTGGAGAGCCTTGACAACTCTGTCAGAACCTCGCTTGATGCGTACGATGAGGCTTCCTTCATCGAGATGGACCCAACAATGCCGCCCTCTCAGAGGTTCTTTATGAATTCCCAGCAGGATTTCAAATTTGACTTCCCAGCTGCCATTTCACAATCTCCTCTCACTACCCTTGTTCATGCTGATGAGCTCATTTCCAACGGCTATGTTTTGCCTCTTTCTGTTGAGTCCTTAATGAAGATGGAGGCATATCATCGTGACGAGGCCTCAAATTCCAGTCCACTCCCTTCCCATTTACAAAAAGATGCTGCTCCAACCGGTAATCATAATTCTAGAGATTGCTCTAAATCATTGAGGAGGTGTAGAAGATTGTCGCGACGAATATTCGAGAAGTACTTGAATTTTCTTAGGCCCTTGTACAAAAGGATCAGAGGTGATCACAACCATCAACACAAAGCAAATCCTAAAGGTGGAAATCTTGATAAAAGGAGCCATTCGGTAAAGAACTGCAGGGTGCGTTCATCGGAAACTAGTCAATCTCCAAGAATAAGTATAGCATATTCCGCCGATGATTGGCGGATGTCATGTGATTCTGAGAGCTCAATCTATGAGGCAGTTATCCATTGCAAAAGATCCATAGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

27.09

Weight (kDa)

8.56

Isoelectric Point (pI)

73.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52900
fragaria_vesca	FvH4_7g30650
malus_domestica	MD01G1211600.v1.1 MD07G1282200.v1.1
prunus_persica	Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1
pyrus_communis	pycom01g22210 pycom07g25610
rosa_chinensis	RchiOBHm_Chr1g0379591
rosa_laevigata	RLG00000026392
rosa_multiflora	Rmu_sc0011286.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280060
rosa_rugosa	Rorug01G0413100
rosa_samantha	Rh1AG436300 Rh1BG393300 Rh1CG406100 Rh1DG424200
rosa_wichuraiana	Rw1G038090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccII	CGCG	1 cut(s)	445
AciI	CCGC	3 cut(s)	155, 633, 646
AclWI	GGATC	2 cut(s)	503, 696
AcsI	RAATTY	4 cut(s)	178, 197, 340, 469
AfaI	GTAC	3 cut(s)	116, 464, 488
AfiI	CCNNNNNNNGG	3 cut(s)	165, 539, 642
AgeI	ACCGGT	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	29, 196, 469
AhlI	ACTAGT	1 cut(s)	599
AluBI	AGCT	5 cut(s)	33, 68, 212, 259, 669
AluI	AGCT	5 cut(s)	33, 68, 212, 259, 669
Alw21I	GWGCWC	2 cut(s)	261, 671
AlwI	GGATC	2 cut(s)	503, 696
AoxI	GGCC	2 cut(s)	333, 479
ApeKI	GCWGC	2 cut(s)	212, 377
ApoI	RAATTY	4 cut(s)	178, 197, 340, 469
AsiGI	ACCGGT	1 cut(s)	386
AspS9I	GGNCC	2 cut(s)	142, 480
AsuHPI	GGTGA	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	2 cut(s)	261, 671
Bbv12I	GWGCWC	2 cut(s)	261, 671
BbvI	GCAGC	2 cut(s)	199, 364
BccI	CCATC	3 cut(s)	133, 304, 522
BceAI	ACGGC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	505
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	2 cut(s)	402, 600
BfmI	CTRYAG	1 cut(s)	577
BisI	GCNGC	3 cut(s)	155, 213, 378
BlsI	GCNGC	3 cut(s)	156, 214, 379
BmcAI	AGTACT	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	2 cut(s)	142, 480
BmiI	GGNNCC	2 cut(s)	144, 560
BmsI	GCATC	3 cut(s)	17, 100, 364
BpmI	CTGGAG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 539, 642
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	691
BseGI	GGATG	2 cut(s)	8, 654
BseLI	CCNNNNNNNGG	3 cut(s)	165, 539, 642
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	2 cut(s)	176, 654
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	2 cut(s)	219, 439
BseXI	GCAGC	2 cut(s)	199, 364
BseYI	CCCAGC	3 cut(s)	12, 183, 208
Bsh1236I	CGCG	1 cut(s)	445
BshFI	GGCC	2 cut(s)	335, 481
BshTI	ACCGGT	1 cut(s)	386
BsiHKAI	GWGCWC	2 cut(s)	261, 671
BsiSI	CCGG	1 cut(s)	387
BsiWI	CGTACG	1 cut(s)	114
BslI	CCNNNNNNNGG	3 cut(s)	165, 539, 642
BsnI	GGCC	2 cut(s)	335, 481
Bsp1286I	GDGCHC	2 cut(s)	261, 671
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	495, 505, 701
Bsp68I	TCGCGA	1 cut(s)	445
BspACI	CCGC	3 cut(s)	155, 633, 646
BspANI	GGCC	2 cut(s)	335, 481
BspCNI	CTCAG	2 cut(s)	175, 655
BspFNI	CGCG	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	144, 560
BspMAI	CTGCAG	1 cut(s)	581
BspPI	GGATC	2 cut(s)	503, 696
BsrDI	GCAATG	1 cut(s)	691
BsrFI	RCCGGY	1 cut(s)	386
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	386
BssMI	GATC	3 cut(s)	495, 505, 701
BstAUI	TGTACA	1 cut(s)	486
BstDEI	CTNAG	3 cut(s)	162, 476, 663
BstENI	CCTNNNNNAGG	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	8, 654
BstFNI	CGCG	1 cut(s)	445
BstKTI	GATC	3 cut(s)	498, 508, 704
BstMBI	GATC	3 cut(s)	495, 505, 701
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	577
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	199, 364
BstX2I	RGATCY	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	701
BsuRI	GGCC	2 cut(s)	335, 481
BtsCI	GGATG	2 cut(s)	8, 654
BtuMI	TCGCGA	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	386
Cfr13I	GGNCC	2 cut(s)	142, 480
Csp6I	GTAC	3 cut(s)	115, 463, 487
CspAI	ACCGGT	1 cut(s)	386
CviAII	CATG	2 cut(s)	248, 654
CviQI	GTAC	3 cut(s)	115, 463, 487
DdeI	CTNAG	3 cut(s)	162, 476, 663
DpnI	GATC	3 cut(s)	497, 507, 703
DpnII	GATC	3 cut(s)	495, 505, 701
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EciI	GGCGGA	2 cut(s)	622, 661
Ecl136II	GAGCTC	2 cut(s)	259, 669
Eco147I	AGGCCT	1 cut(s)	335
Eco24I	GRGCYC	2 cut(s)	261, 671
Eco47I	GGWCC	1 cut(s)	142
Eco53kI	GAGCTC	2 cut(s)	259, 669
EcoICRI	GAGCTC	2 cut(s)	259, 669
EcoNI	CCTNNNNNAGG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	178
EcoT38I	GRGCYC	2 cut(s)	261, 671
FaeI	CATG	2 cut(s)	251, 657
FatI	CATG	2 cut(s)	247, 653
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	155, 213, 378
FokI	GGATG	1 cut(s)	661
FriOI	GRGCYC	2 cut(s)	261, 671
Fsp4HI	GCNGC	3 cut(s)	155, 213, 378
FspBI	CTAG	2 cut(s)	402, 600
GluI	GCNGC	3 cut(s)	155, 213, 378
GsaI	CCCAGC	3 cut(s)	16, 187, 212
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	335, 481
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	2 cut(s)	251, 657
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	2 cut(s)	296, 659
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	55, 350
Hpy188I	TCNGA	5 cut(s)	98, 165, 500, 595, 664
Hpy188III	TCNNGA	7 cut(s)	74, 136, 326, 402, 444, 457, 548
Hpy8I	GTNNAC	2 cut(s)	55, 350
Hpy99I	CGWCG	1 cut(s)	450
HpyAV	CCTTC	2 cut(s)	139, 366
HpyCH4V	TGCA	2 cut(s)	579, 696
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	3 cut(s)	162, 476, 663
Hsp92II	CATG	2 cut(s)	251, 657
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	495, 505, 701
LmnI	GCTCC	2 cut(s)	385, 558
LpnPI	CCDG	9 cut(s)	26, 59, 78, 173, 197, 222, 358, 400, 565
Lsp1109I	GCAGC	2 cut(s)	199, 364
LweI	GCATC	3 cut(s)	17, 100, 364
MaeI	CTAG	2 cut(s)	402, 600
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	3 cut(s)	497, 507, 703
MboI	GATC	3 cut(s)	495, 505, 701
MboII	GAAGA	2 cut(s)	319, 447
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	2 cut(s)	261, 671
MluCI	AATT	6 cut(s)	178, 197, 340, 397, 469, 712
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	291, 407
MseI	TTAA	3 cut(s)	60, 302, 715
MslI	CAYNNNNRTG	2 cut(s)	137, 252
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	387
MvnI	CGCG	1 cut(s)	445
MwoI	GCNNNNNNNGC	1 cut(s)	632
NdeII	GATC	3 cut(s)	495, 505, 701
NlaIII	CATG	2 cut(s)	251, 657
NlaIV	GGNNCC	2 cut(s)	144, 560
NmuCI	GTSAC	1 cut(s)	326
NruI	TCGCGA	1 cut(s)	445
PceI	AGGCCT	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	659
Pfl23II	CGTACG	1 cut(s)	114
PinAI	ACCGGT	1 cut(s)	386
PkrI	GCNGC	3 cut(s)	156, 214, 379
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp124BI	GAGCTC	2 cut(s)	261, 671
PspFI	CCCAGC	3 cut(s)	12, 183, 208
PspLI	CGTACG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	144, 560
PspPI	GGNCC	2 cut(s)	142, 480
PstI	CTGCAG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	212
RruI	TCGCGA	1 cut(s)	445
RsaI	GTAC	3 cut(s)	116, 464, 488
RsaNI	GTAC	3 cut(s)	115, 463, 487
RseI	CAYNNNNRTG	2 cut(s)	137, 252
SacI	GAGCTC	2 cut(s)	261, 671
SaqAI	TTAA	3 cut(s)	60, 302, 715
SatI	GCNGC	3 cut(s)	155, 213, 378
Sau3AI	GATC	3 cut(s)	495, 505, 701
Sau96I	GGNCC	2 cut(s)	142, 480
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	2 cut(s)	261, 671
SfaNI	GCATC	3 cut(s)	17, 100, 364
SfcI	CTRYAG	1 cut(s)	577
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	137, 252
SpeI	ACTAGT	1 cut(s)	599
Sse9I	AATT	6 cut(s)	178, 197, 340, 397, 469, 712
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	3 cut(s)	155, 633, 646
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	2 cut(s)	402, 600
SstI	GAGCTC	2 cut(s)	261, 671
StuI	AGGCCT	1 cut(s)	335
TaqI	TCGA	2 cut(s)	135, 456
TasI	AATT	6 cut(s)	178, 197, 340, 397, 469, 712
TatI	WGTACW	2 cut(s)	462, 486
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	3 cut(s)	60, 302, 715
Tru9I	TTAA	3 cut(s)	60, 302, 715
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	212, 377
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	6 cut(s)	27, 121, 191, 236, 320, 579
VpaK11BI	GGWCC	1 cut(s)	142
XagI	CCTNNNNNAGG	1 cut(s)	163
XapI	RAATTY	4 cut(s)	178, 197, 340, 469
XbaI	TCTAGA	1 cut(s)	401
XspI	CTAG	2 cut(s)	402, 600
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.