Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0010886

Physical Location & Seq

Genomic Coordinates Reverse (-)

51897601 .. 51902142

Gene Structure 4542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG393300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAAACATCTCAGCAACCTCTCTCCATTGAAAGCTTTTCATACAGTTGGTTAGTGAATCTCAAGCCTCCTTCTTTTGAAAGCCTTGACAACTCCCTTAGGACTTCACTAGATGCATCCGATGAAGCCTCCTTCATCGAGATGGACCCAACAATGCCACCCTCTCAGAGATTCTTTAGGAATTCCCAGCAGGATTTCAAATTTGATTCACAATCTCCTCTCTCTACTCTTGTTCATGCTGATGAGCTCATTTCCAATGGTTATCTTTTGCCACTTTCGGTTGATGACCCATTGAAGAATATGGAGTCATATGATGATTATTATGATCAAGCCTCGAATTCCAGTACTGCAAACCTTCCAGTCTCTTCATCAAAAGAAGCTGCTCCAACAGAAAATTCTTCTTCAGATTGCTCTAATTCCTTGAGAAGGTGCAGAAGATTATCAAAAAGAATATTTGAGAAGTACTTGGATTTTCTCAGACCGTTGTACAAAAAGATTAGACAAGGTCATAAAGCAAATCCTAAAGTAGCTGGGAATCATGTTGATAAAAGGTTCCATTCATCGAAGAACAGCAGGGTGTATTCATCAGAAACTGCATCGCCGCGAATAAGCGTAGCCTATTCTGCTCCCGATGATTGGCGAAGGTCCTGTGATTCCGAGAGCTCAATATATGAGGCAGTTCTTCATTGCAAAAGATCCATAGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

26.75

Weight (kDa)

6.22

Isoelectric Point (pI)

68.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52900
fragaria_vesca	FvH4_7g30650
malus_domestica	MD01G1211600.v1.1 MD07G1282200.v1.1
prunus_persica	Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1 Prupe.2G304400_v2.0.a1
pyrus_communis	pycom01g22210 pycom07g25610
rosa_chinensis	RchiOBHm_Chr1g0379591
rosa_laevigata	RLG00000026392
rosa_multiflora	Rmu_sc0011286.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280060
rosa_rugosa	Rorug01G0413100
rosa_samantha	Rh1AG436300 Rh1BG393300 Rh1CG406100 Rh1DG424200
rosa_wichuraiana	Rw1G038090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	604
AciI	CCGC	1 cut(s)	602
AclWI	GGATC	1 cut(s)	690
AcsI	RAATTY	4 cut(s)	181, 200, 337, 394
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	3 cut(s)	346, 464, 488
AfiI	CCNNNNNNNGG	2 cut(s)	426, 636
AgsI	TTSAA	4 cut(s)	32, 80, 199, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AluBI	AGCT	5 cut(s)	36, 247, 380, 530, 663
AluI	AGCT	5 cut(s)	36, 247, 380, 530, 663
Alw21I	GWGCWC	2 cut(s)	249, 665
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	690
AlwNI	CAGNNNCTG	1 cut(s)	593
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	4 cut(s)	181, 200, 337, 394
AspS9I	GGNCC	2 cut(s)	145, 645
AvaII	GGWCC	2 cut(s)	145, 645
AxyI	CCTNAGG	1 cut(s)	98
BanII	GRGCYC	2 cut(s)	249, 665
Bbv12I	GWGCWC	2 cut(s)	249, 665
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	110
BisI	GCNGC	2 cut(s)	381, 602
BlsI	GCNGC	2 cut(s)	382, 603
BmcAI	AGTACT	2 cut(s)	346, 464
Bme18I	GGWCC	2 cut(s)	145, 645
BmgT120I	GGNCC	2 cut(s)	145, 645
BmiI	GGNNCC	2 cut(s)	147, 554
BmsI	GCATC	3 cut(s)	103, 125, 605
BpuEI	CTTGAG	2 cut(s)	47, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 636
Bse1I	ACTGG	2 cut(s)	342, 359
Bse21I	CCTNAGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	685
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	426, 636
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	3 cut(s)	26, 179, 490
BseNI	ACTGG	2 cut(s)	342, 359
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	2 cut(s)	186, 530
BsgI	GTGCAG	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	604
BsiHKAI	GWGCWC	2 cut(s)	249, 665
BslI	CCNNNNNNNGG	2 cut(s)	426, 636
BsmAI	GTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	249, 665
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	2 cut(s)	325, 695
BspACI	CCGC	1 cut(s)	602
BspCNI	CTCAG	3 cut(s)	25, 178, 489
BspFNI	CGCG	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	147, 554
BspPI	GGATC	1 cut(s)	690
BsrDI	GCAATG	1 cut(s)	685
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	342, 359
BssMI	GATC	2 cut(s)	325, 695
Bst4CI	ACNGT	2 cut(s)	47, 483
Bst6I	CTCTTC	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	486
BstDEI	CTNAG	4 cut(s)	12, 98, 165, 476
BstENI	CCTNNNNNAGG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	116
BstFNI	CGCG	1 cut(s)	604
BstKTI	GATC	2 cut(s)	328, 698
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	325, 695
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	695
Bsu36I	CCTNAGG	1 cut(s)	98
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	1 cut(s)	116
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	2 cut(s)	145, 645
Csp6I	GTAC	3 cut(s)	345, 463, 487
CviAII	CATG	2 cut(s)	236, 539
CviQI	GTAC	3 cut(s)	345, 463, 487
DdeI	CTNAG	4 cut(s)	12, 98, 165, 476
DpnI	GATC	2 cut(s)	327, 697
DpnII	GATC	2 cut(s)	325, 695
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Ecl136II	GAGCTC	2 cut(s)	247, 663
Eco24I	GRGCYC	2 cut(s)	249, 665
Eco47I	GGWCC	2 cut(s)	145, 645
Eco53kI	GAGCTC	2 cut(s)	247, 663
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	98
EcoICRI	GAGCTC	2 cut(s)	247, 663
EcoNI	CCTNNNNNAGG	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRI	GAATTC	2 cut(s)	181, 337
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	2 cut(s)	249, 665
FaeI	CATG	2 cut(s)	239, 542
FatI	CATG	2 cut(s)	235, 538
FauNDI	CATATG	1 cut(s)	310
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	381, 602
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	2 cut(s)	249, 665
Fsp4HI	GCNGC	2 cut(s)	381, 602
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	2 cut(s)	381, 602
GsaI	CCCAGC	2 cut(s)	190, 534
Hin1II	CATG	2 cut(s)	239, 542
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	6 cut(s)	58, 171, 206, 305, 535, 653
Hpy188I	TCNGA	6 cut(s)	121, 168, 406, 479, 589, 658
Hpy188III	TCNNGA	2 cut(s)	139, 629
HpyAV	CCTTC	5 cut(s)	81, 142, 365, 420, 636
HpyCH4III	ACNGT	2 cut(s)	47, 483
HpyCH4V	TGCA	5 cut(s)	116, 350, 432, 596, 690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	4 cut(s)	12, 98, 165, 476
Hsp92II	CATG	2 cut(s)	239, 542
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	325, 695
LmnI	GCTCC	2 cut(s)	388, 631
LpnPI	CCDG	7 cut(s)	176, 200, 355, 372, 516, 559, 661
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	3 cut(s)	103, 125, 605
MaeI	CTAG	1 cut(s)	110
MalI	GATC	2 cut(s)	327, 697
MboI	GATC	2 cut(s)	325, 695
MboII	GAAGA	7 cut(s)	307, 357, 390, 393, 447, 577, 674
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	2 cut(s)	249, 665
MluCI	AATT	5 cut(s)	181, 200, 337, 394, 415
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	7 cut(s)	30, 78, 139, 172, 228, 343, 667
Mph1103I	ATGCAT	1 cut(s)	118
MslI	CAYNNNNRTG	2 cut(s)	140, 240
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	1 cut(s)	623
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	2 cut(s)	325, 695
NlaIII	CATG	2 cut(s)	239, 542
NlaIV	GGNNCC	2 cut(s)	147, 554
NsiI	ATGCAT	1 cut(s)	118
PfeI	GAWTC	5 cut(s)	58, 171, 206, 535, 653
PflFI	GACNNNGTC	1 cut(s)	504
PkrI	GCNGC	2 cut(s)	382, 603
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PpuMI	RGGWCCY	1 cut(s)	645
Psp124BI	GAGCTC	2 cut(s)	249, 665
Psp5II	RGGWCCY	1 cut(s)	645
PspFI	CCCAGC	2 cut(s)	186, 530
PspN4I	GGNNCC	2 cut(s)	147, 554
PspPI	GGNCC	2 cut(s)	145, 645
PspPPI	RGGWCCY	1 cut(s)	645
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	695
PsyI	GACNNNGTC	1 cut(s)	504
RsaI	GTAC	3 cut(s)	346, 464, 488
RsaNI	GTAC	3 cut(s)	345, 463, 487
RseI	CAYNNNNRTG	2 cut(s)	140, 240
SacI	GAGCTC	2 cut(s)	249, 665
SatI	GCNGC	2 cut(s)	381, 602
Sau3AI	GATC	2 cut(s)	325, 695
Sau96I	GGNCC	2 cut(s)	145, 645
ScaI	AGTACT	2 cut(s)	346, 464
SchI	GAGTC	1 cut(s)	314
SduI	GDGCHC	2 cut(s)	249, 665
SfaNI	GCATC	3 cut(s)	103, 125, 605
SinI	GGWCC	2 cut(s)	145, 645
SmiMI	CAYNNNNRTG	2 cut(s)	140, 240
SmlI	CTYRAG	2 cut(s)	62, 421
SmoI	CTYRAG	2 cut(s)	62, 421
Sse9I	AATT	5 cut(s)	181, 200, 337, 394, 415
SsiI	CCGC	1 cut(s)	602
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	2 cut(s)	249, 665
TaaI	ACNGT	2 cut(s)	47, 483
TaqI	TCGA	3 cut(s)	138, 335, 563
TasI	AATT	5 cut(s)	181, 200, 337, 394, 415
TatI	WGTACW	3 cut(s)	344, 462, 486
TauI	GCSGC	1 cut(s)	604
TfiI	GAWTC	5 cut(s)	58, 171, 206, 535, 653
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	8 cut(s)	30, 124, 138, 224, 357, 549, 573, 674
Tth111I	GACNNNGTC	1 cut(s)	504
VpaK11BI	GGWCC	2 cut(s)	145, 645
XagI	CCTNNNNNAGG	1 cut(s)	424
XapI	RAATTY	4 cut(s)	181, 200, 337, 394
XspI	CTAG	1 cut(s)	110
ZrmI	AGTACT	2 cut(s)	346, 464
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.