Rh1AG436300

membrane-associated kinase regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010886
Physical Location & Seq
Reverse (-)
66079197 .. 66082972
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG436300.1

Sequence Viewer

Length: 588 bp
ATGCATCCGATGAAGCCTCCTTCATCGAGATGGACCCAACAATGCCACCCTCTCAGAGATTCTTTAGGAATTCCCAGCAGGATTTCAAATTTGATTCACAATCTCCTCTCTCTACTCTTGTTCATGCTGATGAGCTCATTTCCAATGGTTATCTTTTGCCACTTTCGGTTGAAGAATATGGAGTCATATGATGATTATTATGATCAAGCCTCGAATTCCAGTACTGCAAACCTTCCAGTCTCTTCATCAAAAGAAGCTGCTCCAACAGAAAATTCTTCTTCAGATTGCTCTAATTCCTTGAGAAGGTGCAGAAGATTATCAAAAAGAATATTTGAGAAGTACTTGGATTTTCTCAGACCGTTGTACAAAAGGATTAGAGGAGGTCATAAAGCAAATCCTAAAGTAGCTGGGAATCATGTTGATAAAAGGTTCCATTCATCGAAGAACAGCAGGGTGTATTCATCAGAAACTGCATCGCCGCGAATAAGCGTAGCCTATTCTGCTCCCGATGATTGGCGAAGGTCCTGTGATTCCGAGAGCTCAATATATGAGGCAGTTCTTCATTGCAAAAGATCCATAGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.31

Weight (kDa)

9.66

Isoelectric Point (pI)

76.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 481
AciI CCGC 1 cut(s) 479
AclWI GGATC 1 cut(s) 567
AcsI RAATTY 4 cut(s) 69, 88, 214, 271
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 3 cut(s) 223, 341, 365
AfiI CCNNNNNNNGG 2 cut(s) 303, 513
AgsI TTSAA 2 cut(s) 87, 172
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AluBI AGCT 4 cut(s) 135, 257, 407, 540
AluI AGCT 4 cut(s) 135, 257, 407, 540
Alw21I GWGCWC 2 cut(s) 137, 542
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 1 cut(s) 567
AlwNI CAGNNNCTG 1 cut(s) 470
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 4 cut(s) 69, 88, 214, 271
AspS9I GGNCC 2 cut(s) 33, 522
AvaII GGWCC 2 cut(s) 33, 522
BanII GRGCYC 2 cut(s) 137, 542
Bbv12I GWGCWC 2 cut(s) 137, 542
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 24
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 244
BisI GCNGC 2 cut(s) 258, 479
BlsI GCNGC 2 cut(s) 259, 480
BmcAI AGTACT 2 cut(s) 223, 341
Bme18I GGWCC 2 cut(s) 33, 522
BmgT120I GGNCC 2 cut(s) 33, 522
BmiI GGNNCC 2 cut(s) 35, 431
BmsI GCATC 2 cut(s) 13, 482
BpuEI CTTGAG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 513
Bse1I ACTGG 2 cut(s) 219, 236
Bse3DI GCAATG 1 cut(s) 562
BseGI GGATG 1 cut(s) 4
BseLI CCNNNNNNNGG 2 cut(s) 303, 513
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 2 cut(s) 67, 367
BseNI ACTGG 2 cut(s) 219, 236
BseRI GAGGAG 2 cut(s) 95, 393
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 2 cut(s) 74, 407
BsgI GTGCAG 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 481
BsiHKAI GWGCWC 2 cut(s) 137, 542
BslI CCNNNNNNNGG 2 cut(s) 303, 513
BsmAI GTCTC 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 137, 542
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 2 cut(s) 202, 572
BspACI CCGC 1 cut(s) 479
BspCNI CTCAG 2 cut(s) 66, 366
BspFNI CGCG 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 35, 431
BspPI GGATC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 562
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 2 cut(s) 219, 236
BssMI GATC 2 cut(s) 202, 572
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 247
BstAUI TGTACA 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 53, 353
BstENI CCTNNNNNAGG 1 cut(s) 301
BstF5I GGATG 1 cut(s) 4
BstFNI CGCG 1 cut(s) 481
BstKTI GATC 2 cut(s) 205, 575
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 202, 572
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstUI CGCG 1 cut(s) 481
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 1 cut(s) 4
CaiI CAGNNNCTG 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 33, 522
Csp6I GTAC 3 cut(s) 222, 340, 364
CviAII CATG 2 cut(s) 124, 416
CviJI RGCY 7 cut(s) 16, 135, 209, 257, 407, 494, 540
CviKI_1 RGCY 7 cut(s) 16, 135, 209, 257, 407, 494, 540
CviQI GTAC 3 cut(s) 222, 340, 364
DdeI CTNAG 2 cut(s) 53, 353
DpnI GATC 2 cut(s) 204, 574
DpnII GATC 2 cut(s) 202, 572
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Ecl136II GAGCTC 2 cut(s) 135, 540
Eco24I GRGCYC 2 cut(s) 137, 542
Eco47I GGWCC 2 cut(s) 33, 522
Eco53kI GAGCTC 2 cut(s) 135, 540
Eco57I CTGAAG 1 cut(s) 264
EcoICRI GAGCTC 2 cut(s) 135, 540
EcoNI CCTNNNNNAGG 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 522
EcoRI GAATTC 2 cut(s) 69, 214
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 137, 542
FaeI CATG 2 cut(s) 127, 419
FatI CATG 2 cut(s) 123, 415
FauNDI CATATG 1 cut(s) 187
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 258, 479
FriOI GRGCYC 2 cut(s) 137, 542
Fsp4HI GCNGC 2 cut(s) 258, 479
GluI GCNGC 2 cut(s) 258, 479
GsaI CCCAGC 2 cut(s) 78, 411
Hin1II CATG 2 cut(s) 127, 419
HinfI GANTC 5 cut(s) 59, 94, 182, 412, 530
Hpy188I TCNGA 6 cut(s) 9, 56, 283, 356, 466, 535
Hpy188III TCNNGA 2 cut(s) 27, 506
HpyAV CCTTC 4 cut(s) 30, 242, 297, 513
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4V TGCA 5 cut(s) 4, 227, 309, 473, 567
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 2 cut(s) 53, 353
Hsp92II CATG 2 cut(s) 127, 419
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 2 cut(s) 202, 572
LmnI GCTCC 2 cut(s) 265, 508
LpnPI CCDG 7 cut(s) 64, 88, 232, 249, 393, 436, 538
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 2 cut(s) 13, 482
MalI GATC 2 cut(s) 204, 574
MboI GATC 2 cut(s) 202, 572
MboII GAAGA 7 cut(s) 184, 234, 267, 270, 324, 454, 551
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 2 cut(s) 137, 542
MluCI AATT 5 cut(s) 69, 88, 214, 271, 292
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 7 cut(s) 27, 60, 116, 220, 371, 374, 544
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 2 cut(s) 28, 128
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 500
NdeI CATATG 1 cut(s) 187
NdeII GATC 2 cut(s) 202, 572
NlaIII CATG 2 cut(s) 127, 419
NlaIV GGNNCC 2 cut(s) 35, 431
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 4 cut(s) 59, 94, 412, 530
PkrI GCNGC 2 cut(s) 259, 480
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 522
Psp124BI GAGCTC 2 cut(s) 137, 542
Psp5II RGGWCCY 1 cut(s) 522
PspFI CCCAGC 2 cut(s) 74, 407
PspN4I GGNNCC 2 cut(s) 35, 431
PspPI GGNCC 2 cut(s) 33, 522
PspPPI RGGWCCY 1 cut(s) 522
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 3 cut(s) 223, 341, 365
RsaNI GTAC 3 cut(s) 222, 340, 364
RseI CAYNNNNRTG 2 cut(s) 28, 128
SacI GAGCTC 2 cut(s) 137, 542
SatI GCNGC 2 cut(s) 258, 479
Sau3AI GATC 2 cut(s) 202, 572
Sau96I GGNCC 2 cut(s) 33, 522
ScaI AGTACT 2 cut(s) 223, 341
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 2 cut(s) 137, 542
SetI ASST 9 cut(s) 137, 234, 259, 308, 385, 409, 431, 524, 542
SfaNI GCATC 2 cut(s) 13, 482
SinI GGWCC 2 cut(s) 33, 522
SmiMI CAYNNNNRTG 2 cut(s) 28, 128
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 5 cut(s) 69, 88, 214, 271, 292
SsiI CCGC 1 cut(s) 479
SspI AATATT 1 cut(s) 330
SstI GAGCTC 2 cut(s) 137, 542
TaaI ACNGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 26, 212, 440
TasI AATT 5 cut(s) 69, 88, 214, 271, 292
TatI WGTACW 3 cut(s) 221, 339, 363
TauI GCSGC 1 cut(s) 481
TfiI GAWTC 4 cut(s) 59, 94, 412, 530
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 7 cut(s) 12, 26, 112, 234, 426, 450, 551
VpaK11BI GGWCC 2 cut(s) 33, 522
XagI CCTNNNNNAGG 1 cut(s) 301
XapI RAATTY 4 cut(s) 69, 88, 214, 271
ZrmI AGTACT 2 cut(s) 223, 341
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.