FvH4_7g32320

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012655
Physical Location & Seq
Reverse (-)
23245770 .. 23247876
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32320.t1

Sequence Viewer

Length: 1458 bp
ATGATGGTATTGGGGACTTTGGGTTCTGTTGTCCATGGTATGGCTTTTCCAGTTGGATATCTACTGCTTGGCAGAGCACTCAATGCCTTTGGGAGCAATATTAACGACACAGCTGCCATAGTTAAAGCACTGAACAAGGTTATTCCCTTTGTGTGGTACATGGCCTTCGCCACATTTCCGGCTGGAATACTTGAAGTTGGATGCTGGATGTATTCAAGTGAAAGACAAGTGGCACGTCTAAGACTGGCATATCTAAGAGCAGTGCTCAGCCAGGAGGTTGGGGCTTTCGATACAGACTTAACCAGTGGAAAAGTGATCACCGGAATTAGTAACCACACGAGTATCATACACGATGCAATCGGAGAGAAGTTGGGTCATTTTCTTTCAAGTTTGGCAACTTTCTTTTCGGGAATTTTGATTGCTGCAATATGCTGTTGGGAAGTTGCACTGCTTACCTTGTTGGTTGTTCCTTTGATTCTTGTAATCGGAGCCACTTACACTAAGAAAATGAACGCCATTTCGGCTGCTAGGATGGTTTACCTGTCGGAAACTACCTCTATGGTAGAACAGACCATATGTCAGATCAAGACAGTATACGCATTCGTTGGAGAAAACTCGGCGATCAAATCTTTCTCAAACTGCATGGCCAAACAGTATTTGCTAAGCAAAGGAGAGGCTCTAATCAAGGGAGTTGGAACAGGAATGCTTCAAACTGTGACCTTCATTTCTTGGGCTATCATCATTTGGGTTGGTGCTGTTGTAGTCACTGCCAAGAGGGCAAGCGGTGGGGATATTATAGCTGCTGTCATGAGCATTCTCTTTGAAGCCATTTCACTCACTTATGCTGCGCCGGACATGCAAGTCTTCAATCAGGCAAAGGCTGCAGGAACTGAAGTTTTCAAGGTGATCAATAGAAAGCCAGCTATAAGTTATGATTCACCCGGGAAGGAACTTGATAAGATTTACGGCAACATTGACATACGCGATGTTTACTTTTCCTACCCTTCCCGGCCTGACAGAGCCATCCTTCAAGGCTTTTCATTATCAATTCCAGCAGGAAAAACGGTAGTCTTTGTAGGTAGCAGTGGCTGTGGAAAGAGTACTATCATCTCACTAGTTGCAAGATTCTATGATCCTGCAAAAGGGGAGATTCTGATTGACAACCACAACATCAAGGATCTTGACTTGAAATTCCTGAGGAAAAACATAGGAGCTGTTTCGCAAGAACCATCACTGTTTGCAGGCACCATTGCAGACAATATGAAAGTTGGTAAGATGGATGCGGAAGATGTAGAGATCCAGAAAATGCACACACTTTCATATCCCAACTTCCAAATCAGTACTCCACAGAGGGGAGTACAGTTATCTGGAGGACAGAAGCAGAGAATCGCCATAGCAAGAGCCATTCTCAAGAATCCTCCTATTCTTCTGCTTGAAAAAGGCAACAAGTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

486

Amino Acids

52.41

Weight (kDa)

9.17

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 3 - 274 1.1e-43 ABC transporter transmembrane region
ABC_tran PF00005 343 - 478 1.2e-30 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32300 FvH4_7g32320 FvH4_7g33380
malus_domestica MD01G1232000.v1.1 MD01G1232100.v1.1
prunus_persica Prupe.2G322600_v2.0.a1
pyrus_communis pycom01g24050
rosa_chinensis RchiOBHm_Chr1g0383351
rosa_laevigata RLG00000026110
rosa_multiflora Rmu_sc0007173.1_g000013
rosa_roxburghii Rroxscaffold_4G00277370
rosa_rugosa Rorug01G0440700
rosa_samantha Rh1AG466600 Rh1BG423900 Rh1BG424000 Rh1CG437100 Rh1DG456600 Rh1DG456700
rosa_wichuraiana Rw1G040590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 860
AccB1I GGYRCC 1 cut(s) 1244
AccB7I CCANNNNNTGG 1 cut(s) 40
AccI GTMKAC 1 cut(s) 594
AccII CGCG 1 cut(s) 984
AciI CCGC 2 cut(s) 783, 1283
AclWI GGATC 3 cut(s) 1127, 1185, 1291
AcoI YGGCCR 1 cut(s) 645
AcsI RAATTY 2 cut(s) 411, 1190
AcuI CTGAAG 1 cut(s) 912
AfaI GTAC 4 cut(s) 158, 1102, 1342, 1359
AfiI CCNNNNNNNGG 4 cut(s) 40, 153, 1142, 1352
AhdI GACNNNNNGTC 1 cut(s) 576
AhlI ACTAGT 1 cut(s) 1114
AjiI CACGTC 1 cut(s) 236
AjnI CCWGG 1 cut(s) 270
AloI GAACNNNNNNTCC 2 cut(s) 7, 39
AluBI AGCT 4 cut(s) 113, 800, 923, 1214
AluI AGCT 4 cut(s) 113, 800, 923, 1214
Alw21I GWGCWC 3 cut(s) 79, 267, 1454
AlwI GGATC 3 cut(s) 1127, 1185, 1291
AlwNI CAGNNNCTG 2 cut(s) 890, 1089
Ama87I CYCGRG 1 cut(s) 941
AoxI GGCC 3 cut(s) 162, 645, 1010
ApeKI GCWGC 6 cut(s) 113, 422, 524, 800, 845, 881
ApoI RAATTY 2 cut(s) 411, 1190
AspLEI GCGC 1 cut(s) 850
AsuC2I CCSGG 3 cut(s) 942, 943, 1009
AsuHPI GGTGA 3 cut(s) 310, 916, 930
AvaI CYCGRG 1 cut(s) 941
AxyI CCTNAGG 1 cut(s) 1196
BaeI ACNNNNGTAYC 2 cut(s) 325, 358
BalI TGGCCA 1 cut(s) 647
BanI GGYRCC 1 cut(s) 1244
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BauI CACGAG 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 856
Bbv12I GWGCWC 3 cut(s) 79, 267, 1454
BbvI GCAGC 6 cut(s) 100, 409, 511, 787, 832, 868
BccI CCATC 4 cut(s) 526, 1031, 1237, 1270
BceAI ACGGC 1 cut(s) 982
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 1 cut(s) 272
BclI TGATCA 2 cut(s) 315, 906
BcnI CCSGG 3 cut(s) 942, 943, 1009
BcuI ACTAGT 1 cut(s) 1114
BfaI CTAG 2 cut(s) 528, 1115
BfmI CTRYAG 1 cut(s) 882
BglI GCCNNNNNGGC 2 cut(s) 521, 776
BisI GCNGC 6 cut(s) 114, 423, 525, 801, 846, 882
BlpI GCTNAGC 2 cut(s) 266, 662
BlsI GCNGC 6 cut(s) 115, 424, 526, 802, 847, 883
BmcAI AGTACT 2 cut(s) 1102, 1342
Bme1390I CCNGG 4 cut(s) 272, 942, 943, 1009
BmeRI GACNNNNNGTC 1 cut(s) 576
BmeT110I CYCGRG 1 cut(s) 941
BmgBI CACGTC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 490, 1246
BmrFI CCNGG 4 cut(s) 272, 942, 943, 1009
BmsI GCATC 3 cut(s) 191, 343, 1270
BpiI GAAGAC 1 cut(s) 856
BplI GAGNNNNNCTC 4 cut(s) 249, 281, 1392, 1424
BpmI CTGGAG 1 cut(s) 1389
Bpu1102I GCTNAGC 2 cut(s) 266, 662
BpuEI CTTGAG 1 cut(s) 1394
BpuMI CCSGG 3 cut(s) 942, 943, 1009
BsaJI CCNNGG 2 cut(s) 34, 941
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 153, 1142, 1352
Bse1I ACTGG 3 cut(s) 50, 249, 303
Bse21I CCTNAGG 1 cut(s) 1196
Bse3DI GCAATG 1 cut(s) 1248
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 34, 941
BseGI GGATG 5 cut(s) 206, 213, 537, 1023, 1285
BseLI CCNNNNNNNGG 4 cut(s) 40, 153, 1142, 1352
BseMI GCAATG 1 cut(s) 1248
BseMII CTCAG 2 cut(s) 280, 1187
BseNI ACTGG 3 cut(s) 50, 249, 303
BseXI GCAGC 6 cut(s) 100, 409, 511, 787, 832, 868
Bsh1236I CGCG 1 cut(s) 984
BshFI GGCC 3 cut(s) 164, 647, 1012
BshNI GGYRCC 1 cut(s) 1244
BsiHKAI GWGCWC 3 cut(s) 79, 267, 1454
BsiHKCI CYCGRG 1 cut(s) 941
BsiSI CCGG 5 cut(s) 179, 321, 851, 942, 1009
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 4 cut(s) 40, 153, 1142, 1352
BsmFI GGGAC 1 cut(s) 28
BsmI GAATGC 3 cut(s) 599, 708, 813
BsnI GGCC 3 cut(s) 164, 647, 1012
BsoBI CYCGRG 1 cut(s) 941
Bsp1286I GDGCHC 3 cut(s) 79, 267, 1454
Bsp143I GATC 7 cut(s) 315, 582, 621, 906, 1132, 1177, 1296
Bsp1720I GCTNAGC 2 cut(s) 266, 662
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 2 cut(s) 783, 1283
BspANI GGCC 3 cut(s) 164, 647, 1012
BspCNI CTCAG 2 cut(s) 279, 1188
BspFNI CGCG 1 cut(s) 984
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 2 cut(s) 490, 1246
BspMAI CTGCAG 1 cut(s) 886
BspPI GGATC 3 cut(s) 1127, 1185, 1291
BspT107I GGYRCC 1 cut(s) 1244
BsrDI GCAATG 1 cut(s) 1248
BsrI ACTGG 3 cut(s) 50, 249, 303
BssECI CCNNGG 2 cut(s) 34, 941
BssMI GATC 7 cut(s) 315, 582, 621, 906, 1132, 1177, 1296
BssNAI GTATAC 1 cut(s) 595
BssSI CACGAG 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 34
Bst1107I GTATAC 1 cut(s) 595
Bst2BI CACGAG 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 6 cut(s) 592, 654, 715, 1066, 1236, 1362
BstAPI GCANNNNNTGC 3 cut(s) 83, 881, 1449
BstC8I GCNNGC 3 cut(s) 781, 921, 1243
BstDEI CTNAG 6 cut(s) 239, 254, 266, 501, 662, 1196
BstDSI CCRYGG 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 1140
BstF5I GGATG 5 cut(s) 206, 213, 537, 1023, 1285
BstFNI CGCG 1 cut(s) 984
BstHHI GCGC 1 cut(s) 850
BstKTI GATC 7 cut(s) 318, 585, 624, 909, 1135, 1180, 1299
BstMBI GATC 7 cut(s) 315, 582, 621, 906, 1132, 1177, 1296
BstMWI GCNNNNNNNGC 6 cut(s) 83, 521, 776, 856, 881, 1449
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 859
BstSCI CCNGG 4 cut(s) 270, 940, 941, 1007
BstSFI CTRYAG 1 cut(s) 882
BstUI CGCG 1 cut(s) 984
BstV1I GCAGC 6 cut(s) 100, 409, 511, 787, 832, 868
BstV2I GAAGAC 1 cut(s) 856
BstX2I RGATCY 2 cut(s) 1177, 1296
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 2 cut(s) 1177, 1296
BstZ17I GTATAC 1 cut(s) 595
Bsu36I CCTNAGG 1 cut(s) 1196
BsuRI GGCC 3 cut(s) 164, 647, 1012
BtgI CCRYGG 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 999
BtrI CACGTC 1 cut(s) 236
BtsCI GGATG 5 cut(s) 206, 213, 537, 1023, 1285
BtsI GCAGTG 4 cut(s) 267, 446, 765, 1090
BtsIMutI CAGTG 7 cut(s) 128, 267, 310, 446, 765, 1090, 1232
Cac8I GCNNGC 3 cut(s) 781, 921, 1243
CaiI CAGNNNCTG 2 cut(s) 890, 1089
CciI TCATGA 1 cut(s) 807
CfoI GCGC 1 cut(s) 850
Cfr9I CCCGGG 1 cut(s) 941
Csp6I GTAC 4 cut(s) 157, 1101, 1341, 1358
CviAII CATG 5 cut(s) 35, 160, 643, 808, 856
CviQI GTAC 4 cut(s) 157, 1101, 1341, 1358
DdeI CTNAG 6 cut(s) 239, 254, 266, 501, 662, 1196
DpnI GATC 7 cut(s) 317, 584, 623, 908, 1134, 1179, 1298
DpnII GATC 7 cut(s) 315, 582, 621, 906, 1132, 1177, 1296
DrdI GACNNNNNNGTC 1 cut(s) 860
DriI GACNNNNNGTC 1 cut(s) 576
DseDI GACNNNNNNGTC 1 cut(s) 860
EaeI YGGCCR 1 cut(s) 645
Eam1105I GACNNNNNGTC 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 34
Eco32I GATATC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 912
Eco81I CCTNAGG 1 cut(s) 1196
Eco88I CYCGRG 1 cut(s) 941
EcoNI CCTNNNNNAGG 1 cut(s) 1140
EcoRII CCWGG 1 cut(s) 270
EcoRV GATATC 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 5 cut(s) 38, 163, 646, 811, 859
FaqI GGGAC 1 cut(s) 28
FatI CATG 5 cut(s) 34, 159, 642, 807, 855
FauNDI CATATG 1 cut(s) 575
FbaI TGATCA 2 cut(s) 315, 906
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 6 cut(s) 114, 423, 525, 801, 846, 882
FokI GGATG 5 cut(s) 213, 220, 544, 1010, 1292
Fsp4HI GCNGC 6 cut(s) 114, 423, 525, 801, 846, 882
FspBI CTAG 2 cut(s) 528, 1115
GlaI GCGC 1 cut(s) 849
GluI GCNGC 6 cut(s) 114, 423, 525, 801, 846, 882
GsuI CTGGAG 1 cut(s) 1389
HaeIII GGCC 3 cut(s) 164, 647, 1012
HapII CCGG 5 cut(s) 179, 321, 851, 942, 1009
HhaI GCGC 1 cut(s) 850
Hin1II CATG 5 cut(s) 38, 163, 646, 811, 859
Hin6I GCGC 1 cut(s) 848
HinP1I GCGC 1 cut(s) 848
HinfI GANTC 6 cut(s) 475, 935, 1125, 1150, 1386, 1414
HpaII CCGG 5 cut(s) 179, 321, 851, 942, 1009
HphI GGTGA 3 cut(s) 310, 916, 930
Hpy166II GTNNAC 3 cut(s) 538, 595, 991
Hpy188I TCNGA 5 cut(s) 362, 488, 547, 582, 1155
Hpy188III TCNNGA 9 cut(s) 408, 586, 808, 1181, 1195, 1300, 1368, 1411, 1455
Hpy8I GTNNAC 3 cut(s) 538, 595, 991
HpyAV CCTTC 5 cut(s) 175, 730, 940, 1014, 1037
HpyCH4III ACNGT 6 cut(s) 592, 654, 715, 1066, 1236, 1362
HpyCH4IV ACGT 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 521, 776, 856, 881, 1449
HpyF3I CTNAG 6 cut(s) 239, 254, 266, 501, 662, 1196
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 5 cut(s) 38, 163, 646, 811, 859
HspAI GCGC 1 cut(s) 848
Ksp22I TGATCA 2 cut(s) 315, 906
Kzo9I GATC 7 cut(s) 315, 582, 621, 906, 1132, 1177, 1296
LmnI GCTCC 3 cut(s) 93, 488, 1211
Lsp1109I GCAGC 6 cut(s) 100, 409, 511, 787, 832, 868
LweI GCATC 3 cut(s) 191, 343, 1270
MaeI CTAG 2 cut(s) 528, 1115
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 3 cut(s) 329, 715, 763
MalI GATC 7 cut(s) 317, 584, 623, 908, 1134, 1179, 1298
MboI GATC 7 cut(s) 315, 582, 621, 906, 1132, 1177, 1296
MboII GAAGA 3 cut(s) 856, 1298, 1418
MflI RGATCY 2 cut(s) 1177, 1296
MhlI GDGCHC 3 cut(s) 79, 267, 1454
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 4 cut(s) 324, 411, 1047, 1190
MluNI TGGCCA 1 cut(s) 647
MmeI TCCRAC 5 cut(s) 34, 178, 525, 586, 673
MnlI CCTC 8 cut(s) 268, 565, 667, 768, 1191, 1344, 1364, 1428
Mox20I TGGCCA 1 cut(s) 647
MscI TGGCCA 1 cut(s) 647
MseI TTAA 3 cut(s) 102, 123, 299
Msp20I TGGCCA 1 cut(s) 647
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 5 cut(s) 179, 321, 851, 942, 1009
MspR9I CCNGG 4 cut(s) 272, 942, 943, 1009
Mva1269I GAATGC 3 cut(s) 599, 708, 813
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 984
MwoI GCNNNNNNNGC 6 cut(s) 83, 521, 776, 856, 881, 1449
NciI CCSGG 3 cut(s) 942, 943, 1009
NcoI CCATGG 1 cut(s) 34
NdeI CATATG 1 cut(s) 575
NdeII GATC 7 cut(s) 315, 582, 621, 906, 1132, 1177, 1296
NlaIII CATG 5 cut(s) 38, 163, 646, 811, 859
NlaIV GGNNCC 2 cut(s) 490, 1246
NmeAIII GCCGAG 1 cut(s) 596
NmuCI GTSAC 2 cut(s) 715, 763
NspI RCATGY 1 cut(s) 859
PagI TCATGA 1 cut(s) 807
PctI GAATGC 3 cut(s) 599, 708, 813
PfeI GAWTC 6 cut(s) 475, 935, 1125, 1150, 1386, 1414
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 6 cut(s) 115, 424, 526, 802, 847, 883
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 490, 1246
PstI CTGCAG 1 cut(s) 886
PstNI CAGNNNCTG 2 cut(s) 890, 1089
PsuI RGATCY 2 cut(s) 1177, 1296
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 4 cut(s) 158, 1102, 1342, 1359
RsaNI GTAC 4 cut(s) 157, 1101, 1341, 1358
SaqAI TTAA 3 cut(s) 102, 123, 299
SatI GCNGC 6 cut(s) 114, 423, 525, 801, 846, 882
Sau3AI GATC 7 cut(s) 315, 582, 621, 906, 1132, 1177, 1296
ScaI AGTACT 2 cut(s) 1102, 1342
ScrFI CCNGG 4 cut(s) 272, 942, 943, 1009
SduI GDGCHC 3 cut(s) 79, 267, 1454
SfaNI GCATC 3 cut(s) 191, 343, 1270
SfcI CTRYAG 1 cut(s) 882
SmaI CCCGGG 1 cut(s) 943
SmlI CTYRAG 1 cut(s) 1409
SmoI CTYRAG 1 cut(s) 1409
SpeI ACTAGT 1 cut(s) 1114
Sse9I AATT 4 cut(s) 324, 411, 1047, 1190
SsiI CCGC 2 cut(s) 783, 1283
SspI AATATT 1 cut(s) 100
SspMI CTAG 2 cut(s) 528, 1115
StyD4I CCNGG 4 cut(s) 270, 940, 941, 1007
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 6 cut(s) 592, 654, 715, 1066, 1236, 1362
TaiI ACGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 288
TasI AATT 4 cut(s) 324, 411, 1047, 1190
TatI WGTACW 3 cut(s) 1100, 1340, 1357
TfiI GAWTC 6 cut(s) 475, 935, 1125, 1150, 1386, 1414
Tru1I TTAA 3 cut(s) 102, 123, 299
Tru9I TTAA 3 cut(s) 102, 123, 299
TscAI CASTG 7 cut(s) 135, 267, 310, 453, 772, 1090, 1239
TseFI GTSAC 2 cut(s) 715, 763
TseI GCWGC 6 cut(s) 113, 422, 524, 800, 845, 881
Tsp45I GTSAC 2 cut(s) 715, 763
TspDTI ATGAA 5 cut(s) 524, 712, 1029, 1277, 1308
TspMI CCCGGG 1 cut(s) 941
TspRI CASTG 7 cut(s) 135, 267, 310, 453, 772, 1090, 1239
Van91I CCANNNNNTGG 1 cut(s) 40
XagI CCTNNNNNAGG 1 cut(s) 1140
XapI RAATTY 2 cut(s) 411, 1190
XceI RCATGY 1 cut(s) 859
XmaI CCCGGG 1 cut(s) 941
XmiI GTMKAC 1 cut(s) 594
XspI CTAG 2 cut(s) 528, 1115
ZrmI AGTACT 2 cut(s) 1102, 1342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.