Rh1CG437100

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012655
Physical Location & Seq
Reverse (-)
69169426 .. 69174004
4579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG437100.1

Sequence Viewer

Length: 3774 bp
ATGGTTCAACCTCAACCCCACGAAGAACTCATGCAGAATATGGAAAAGAAGAAACAAGCAATCGATGAGGATGATGAGACGAAGGGAATCTCATCCGAAACGTTGGGATTCAGTAAGCTGCTAAGCTATGCCGACGGATGGGATTGGATTATGATGGTATTGGGGACGTTGGGTTCTGTTGTCCATGGTATGGCTTTTCCAGTTGGATATCTACTGCTCGGCAGAGCTCTCGATGCTTTTGGGAACAATATCAACGACACACCTGCCATGGTTAAAGCACTGAACAAGGTTATTCCATATGTGTGGTACATGGCCTTCGCCACATTTCCGGCTGGAATACTTGAAGTTGGATGCTGGATGTATTCAAGTGAAAGACAAGTGGCACGTCTAAGGCTAGCATATCTAAGAGCAGTGCTCAGCCAGGAGGTTGGGGCTTTCGATACAGACTTAACCAGTGGAAAAGTGATCACCGGAATTAGTAACCACACTAGTATCATACACAGTGCAATCGGAGAGACGTTGGGGCATTTTCTGTCAAGTTTCGCAACTTTCTTTTCAGGGATTTTGATTGCTGCAATATGCTGTTGGGAAGTTGCACTGCTTACCTTGTTGGTTGTTCCTTTGATTCTTGTAATCGGAGCCACTTATACTAAGAAGATGAAAGCTGTCTCGGCTGCTAGGATGCTTTACCTGGCGGAAGCTACCTCTATGGTAGAACAGACCATATGTCAAATCAAAACAGTATATGCATTCGTTGGAGAAAACTCGGCAATCAAATCTTTCTCAAACTGCATGGCCAAACAGTATTTGCTAAGCAAAGGGGAGGCTCTAGTAAAGGGAGTTGGAACAGGAATGCTTCAATCTGTGACCTTCATTTCCTGGGCTATCATCATTTGGGTTGGTGCTGTTGTAGTCACTGCCAAGAGGGCAAGCGGTGGAGATATTATAGCCGCTGTCATGAGCATTCTCTTTGGAGCCATATCACTCACTTATGCTGCGCCGGACATGCAAGTCTTCAATCAAGCAAAGGCTGCAGGAACTGAAGTTTTCAAGGTGATCAATAGAAAGCCAGCTATAAGTTATGATTCACCAGGGAAGGAACTTGACAAGATTTACGGCAACATTGACATACATGATGTTTACTTTTCCTACCCTTCCCGGCCTGACAGAGCCATCCTTCAAGGCTTTTCATTGTCAATCCCAGCAGGAAAAACTGTAGCCTTTGTGGGCAGCAGTGGCTGTGGAAAGAGTACTATCATCTCACTAGTCGCAAGATTCTATGATCCGCCAAAAGGGGAGATTCTGATTGACAACCACAACATCAAGGATCTTGACTTGAAATTCCTGAGGAAAAACATAGGAGCTGTTTCGCAGGAACCATCACTGTTTGCAGGCACCATTGCGGACAACATGAAAGTCGGTAAGATGGATGCAGAAGATGTAGAGATCCAGAAAGCATCAGTGATGGCAAATGCACACACTTTCATATCTCAACTTCCAGATCAGTACTCCACAGAGGTAGGACAAAGGGGAGTCCAGTTATCTGGAGGCCAGAAGCAAAGAATCGCCATAGCAAGAGCCATTCTCAAGAATCCTCCTATTCTTCTGCTTGATGAGGCAACAAGTGCTCTTGACTCGGAATCTGAGAAGGTGGTTCAAGAAGCAATTGACAAGGCTATGCAAGGAAGGACAGTCATCTTGATAGCACACAGACTATCAACTATTGTTAATGCAGATATTATTGCGGTTGTGGAAAATGGACAAGTTTCAGAAACAGGAACTCACCGGAGCTTACTTGAAAGCAGCAAATTCTACAACAACTTATTTAACATGCAGAACCTCAACCCAGTTCATGAGTCGAGAGAAGATGGTCCCTCTGAAGAACCTGAAAGCATCCACCAAAAGAACTCACCTGAACAGATAACACGAGCTAAGGAGCCCCACAGCGACCGGTATCCTAATCAGCCTCCCAAGCAAGACGAAGAGGAAATAAGAAAACAAGCCATATTCTTCAGAATCTGGTTTGGCTTGAAAACGAGAGAACTCGTAAAGATTGCTATTGGTTCTTTTGCAGCAGCTTTCTCTGGCATATCAAAGCCTGTCTTTGGGTATTACATTATAACAATAGGAGTAGCATACTACCACCCAGATGCTAAAAGAAAAGTCTCAAAATATTCAATCACCTTCGCTCTAATTGGATTCATTTCATTGTTCTCTCACACCTTGCAACATTACTTCTTTGGAATGGTTGGAGAGAAGGCCATGACAAACCTGAGACGTGCTCTCTATTCAGGTGTGCTACGCAATGAAATCGGATGGTATGAGAACCCTGAGAATGGCATTGGACAGCTCACCTCAAGGATCATCAATGACACTTCAATGGTTAAACTGGTAATTGCTGACCGGATGTCTGTCATTGTTCAGTGCATCTCCTCCATACTGATTGCAACCATTGTGAGCATGGTTGTCAACTGGAGAATGGGGTTGGTAGCTTGGGCTGTGATGCCTTGCCACTTCATTGGCGGTCTCATTCAAGCCAAGTCTGCCAAGGGTTTTGCAGGAGACTCAGCTGCTGCACATAATGAACTTGTTTCTCTTGCTTCTGAGTCTGCACAAAACATAAGAACCGTTGCGTCATTTTGCCATGAAGATCATATACTAAAAAAAGCCGAAATATCTCTGGAAACACCCAAGAGAATGAGCAGGAAAGAAAGTATCAAGTATGGCATAATTCAGGGAGTTTCTCTTTGCTTATGGAACATTGCACATGCTGTGGCACTGTGGTACACAACAGTTTTGGTTCATAAAAATCAATCGAGCTTCAAAGATGGCATAAGATCATACCAGATTTTCTCTCTCACAGTACCTTCAATCACAGAATTGTGGACATTGATTCCCACTGTCATTTCTGCCATCAATGTGCTCACTCCTGCATTCGAGACCCTTGACCGCAAAACTGAAATAGATCCATCTACACCAGAAACTTCAAATCGGGACAGAATCAAAGGGAACATTGAATTTCAAAACGTTGAGTTTAATTACCCTTTGAGACCAGAAGTAACTATCCTGAACAACTTCAGTGTACAAATTGAAGCTGGTAAAAAGGTGGCTCTTGTCGGTCCAAGTGGAGCTGGAAAATCTTCAGTTCTGGCCCTTCTGCTAAGATTTTATGATCCCTTGAAAGGTAAGCTACTCATTGATGGAAAGGAGATAAGGGAATACAATTTGAGATGGCTGAGAACACAAATAGGGTTGGTGCAACAAGAGCCTCTTCTTTTTAGCTCCTCAATCAGACACAATATCTGCTACGGGAACGAAAGTGCTTCTGAAACTGAGATTGTGGAGGTATCAAAGGAAGCAAACATTGATGAGTTCATAAGCAATTTGCCTGATGGATATGAAACAGTTGTTGGGGAGAAGGGATGCCAACTTTCAGGAGGACAAAAGCAAAGAATAGCCATAGCTAGAACACTGCTAAAGAGGCCTGCAATTTTGCTTCTGGATGAAGCAACAAGTGCCCTTGATGCTGAATCTGAGAAATATGTGGTGAGTGCATTGGAAGCGATAAATTTGAAAAAGAATGGGGGCCTGCTGTCAAAAACCACACAGATTACAGTTGCACATAGGCTTTCCACAATAATAAAGTCGGATATCATTGTTGTCATGGACAAAGGTGAGATTGTGGAGATGGGATCCCACTCAACCCTAATAACAGCATCTGAGGGAGTTTATTCAAGATTATATCAGATACAGAGCATGGGAGAAGAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1257

Amino Acids

138.15

Weight (kDa)

6.96

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 53 - 326 5.5e-45 ABC transporter transmembrane region
SMC_N PF02463 246 - 584 1.4e-06 RecF/RecN/SMC N terminal domain
ABC_tran PF00005 393 - 542 2.3e-34 ABC transporter
ABC_membrane PF00664 687 - 949 4e-46 ABC transporter transmembrane region
ABC_tran PF00005 1023 - 1172 8.3e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32300 FvH4_7g32320 FvH4_7g33380
malus_domestica MD01G1232000.v1.1 MD01G1232100.v1.1
prunus_persica Prupe.2G322600_v2.0.a1
pyrus_communis pycom01g24050
rosa_chinensis RchiOBHm_Chr1g0383351
rosa_laevigata RLG00000026110
rosa_multiflora Rmu_sc0007173.1_g000013
rosa_roxburghii Rroxscaffold_4G00277370
rosa_rugosa Rorug01G0440700
rosa_samantha Rh1AG466600 Rh1BG423900 Rh1BG424000 Rh1CG437100 Rh1DG456600 Rh1DG456700
rosa_wichuraiana Rw1G040590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2120
AarI CACCTGC 1 cut(s) 271
AasI GACNNNNNNGTC 1 cut(s) 1010
Acc36I ACCTGC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 1394
AccB7I CCANNNNNTGG 1 cut(s) 190
AciI CCGC 8 cut(s) 695, 933, 951, 1286, 1403, 1745, 2523, 2950
AclI AACGTT 2 cut(s) 101, 3027
AclWI GGATC 8 cut(s) 1277, 1335, 1441, 2369, 2960, 3167, 3687, 3700
AcoI YGGCCR 1 cut(s) 795
AcsI RAATTY 4 cut(s) 1340, 1808, 3017, 3568
AcuI CTGAAG 5 cut(s) 1062, 1899, 1996, 3061, 3126
AfaI GTAC 6 cut(s) 308, 1252, 1508, 2786, 2865, 3084
AfiI CCNNNNNNNGG 6 cut(s) 138, 190, 1292, 2105, 2336, 3182
AgeI ACCGGT 1 cut(s) 1950
AhdI GACNNNNNGTC 2 cut(s) 726, 2407
AhlI ACTAGT 2 cut(s) 488, 1264
AjiI CACGTC 2 cut(s) 386, 2279
AjnI CCWGG 4 cut(s) 420, 690, 878, 1090
AjuI GAANNNNNNNTTGG 2 cut(s) 3393, 3425
AloI GAACNNNNNNTCC 2 cut(s) 157, 189
Alw21I GWGCWC 5 cut(s) 229, 417, 1630, 2284, 2925
Alw26I GTCTC 9 cut(s) 71, 509, 673, 2170, 2269, 2531, 2556, 2933, 3043
AlwI GGATC 8 cut(s) 1277, 1335, 1441, 2369, 2960, 3167, 3687, 3700
AlwNI CAGNNNCTG 5 cut(s) 1040, 1239, 2019, 2573, 3719
AoxI GGCC 8 cut(s) 312, 795, 1160, 1549, 2259, 3150, 3482, 3586
ApoI RAATTY 4 cut(s) 1340, 1808, 3017, 3568
AsiGI ACCGGT 1 cut(s) 1950
Asp700I GAANNNNTTC 2 cut(s) 3074, 3139
AspLEI GCGC 1 cut(s) 1000
AspS9I GGNCC 4 cut(s) 1871, 3119, 3151, 3586
AsuC2I CCSGG 1 cut(s) 1159
AsuHPI GGTGA 9 cut(s) 460, 1066, 1080, 1775, 1902, 2173, 2344, 3559, 3686
AsuNHI GCTAGC 1 cut(s) 394
AvaII GGWCC 2 cut(s) 1871, 3119
AxyI CCTNAGG 1 cut(s) 1346
BaeGI GKGCMC 1 cut(s) 3520
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BalI TGGCCA 1 cut(s) 797
BamHI GGATCC 1 cut(s) 3692
BanI GGYRCC 1 cut(s) 1394
BanII GRGCYC 2 cut(s) 229, 1941
BarI GAAGNNNNNNTAC 4 cut(s) 299, 331, 2640, 2672
BauI CACGAG 1 cut(s) 1926
BbsI GAAGAC 1 cut(s) 1006
Bbv12I GWGCWC 5 cut(s) 229, 417, 1630, 2284, 2925
BceAI ACGGC 1 cut(s) 1132
BcgI CGANNNNNNTGC 6 cut(s) 211, 245, 245, 279, 2293, 2327
BciT130I CCWGG 4 cut(s) 422, 692, 880, 1092
BciVI GTATCC 1 cut(s) 1965
BclI TGATCA 2 cut(s) 465, 1056
BcnI CCSGG 1 cut(s) 1159
BcoDI GTCTC 9 cut(s) 71, 509, 673, 2170, 2269, 2531, 2556, 2933, 3043
BcuI ACTAGT 2 cut(s) 488, 1264
BfaI CTAG 6 cut(s) 395, 489, 678, 830, 1265, 3465
BfmI CTRYAG 2 cut(s) 1032, 1215
BfuAI ACCTGC 1 cut(s) 271
BfuI GTATCC 1 cut(s) 1965
BglI GCCNNNNNGGC 1 cut(s) 926
BlpI GCTNAGC 3 cut(s) 122, 416, 812
BmcAI AGTACT 2 cut(s) 1252, 1508
Bme1390I CCNGG 5 cut(s) 422, 692, 880, 1092, 1159
Bme18I GGWCC 2 cut(s) 1871, 3119
BmeRI GACNNNNNGTC 2 cut(s) 726, 2407
BmgBI CACGTC 2 cut(s) 386, 2279
BmgT120I GGNCC 4 cut(s) 1871, 3119, 3151, 3586
BmiI GGNNCC 8 cut(s) 640, 976, 1377, 1396, 1873, 1938, 3587, 3694
BmrFI CCNGG 5 cut(s) 422, 692, 880, 1092, 1159
BmrI ACTGGG 1 cut(s) 1841
BmtI GCTAGC 1 cut(s) 398
BmuI ACTGGG 1 cut(s) 1841
BpiI GAAGAC 1 cut(s) 1006
BplI GAGNNNNNCTC 6 cut(s) 399, 431, 1569, 1601, 2266, 2298
BpmI CTGGAG 2 cut(s) 1566, 2494
Bpu10I CCTNAGC 1 cut(s) 1932
Bpu1102I GCTNAGC 3 cut(s) 122, 416, 812
BpuEI CTTGAG 2 cut(s) 1571, 2341
BpuMI CCSGG 1 cut(s) 1159
Bsa29I ATCGAT 1 cut(s) 63
BsaI GGTCTC 3 cut(s) 2531, 2933, 3043
BsaJI CCNNGG 5 cut(s) 184, 267, 879, 1091, 2547
BsaWI WCCGGW 4 cut(s) 470, 1785, 1950, 2403
Bsc4I CCNNNNNNNGG 6 cut(s) 138, 190, 1292, 2105, 2336, 3182
Bse118I RCCGGY 1 cut(s) 1950
Bse1I ACTGG 6 cut(s) 200, 453, 1537, 1847, 2394, 2477
Bse21I CCTNAGG 1 cut(s) 1346
Bse3DI GCAATG 3 cut(s) 1398, 2311, 2760
BseBI CCWGG 4 cut(s) 422, 692, 880, 1092
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 5 cut(s) 184, 267, 879, 1091, 2547
BseLI CCNNNNNNNGG 6 cut(s) 138, 190, 1292, 2105, 2336, 3182
BseMI GCAATG 3 cut(s) 1398, 2311, 2760
BseNI ACTGG 6 cut(s) 200, 453, 1537, 1847, 2394, 2477
BseRI GAGGAG 2 cut(s) 2422, 3274
BseSI GKGCMC 1 cut(s) 3520
BseYI CCCAGC 1 cut(s) 1201
BsgI GTGCAG 2 cut(s) 2559, 2595
Bsh1285I CGRYCG 1 cut(s) 1951
BshFI GGCC 8 cut(s) 314, 797, 1162, 1551, 2261, 3152, 3484, 3588
BshNI GGYRCC 1 cut(s) 1394
BshTI ACCGGT 1 cut(s) 1950
BshVI ATCGAT 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 1951
BsiHKAI GWGCWC 5 cut(s) 229, 417, 1630, 2284, 2925
BsiSI CCGG 7 cut(s) 329, 471, 1001, 1159, 1786, 1951, 2404
BslFI GGGAC 3 cut(s) 178, 1857, 3008
BslI CCNNNNNNNGG 6 cut(s) 138, 190, 1292, 2105, 2336, 3182
BsmAI GTCTC 9 cut(s) 71, 509, 673, 2170, 2269, 2531, 2556, 2933, 3043
BsmBI CGTCTC 3 cut(s) 71, 509, 2269
BsmFI GGGAC 3 cut(s) 178, 1857, 3008
BsmI GAATGC 4 cut(s) 749, 858, 963, 2933
BsnI GGCC 8 cut(s) 314, 797, 1162, 1551, 2261, 3152, 3484, 3588
Bso31I GGTCTC 3 cut(s) 2531, 2933, 3043
Bsp1286I GDGCHC 7 cut(s) 229, 417, 1630, 1941, 2284, 2925, 3520
Bsp1407I TGTACA 1 cut(s) 3082
Bsp1720I GCTNAGC 3 cut(s) 122, 416, 812
Bsp19I CCATGG 2 cut(s) 184, 267
BspACI CCGC 8 cut(s) 695, 933, 951, 1286, 1403, 1745, 2523, 2950
BspANI GGCC 8 cut(s) 314, 797, 1162, 1551, 2261, 3152, 3484, 3588
BspDI ATCGAT 1 cut(s) 63
BspHI TCATGA 2 cut(s) 957, 1852
BspLI GGNNCC 8 cut(s) 640, 976, 1377, 1396, 1873, 1938, 3587, 3694
BspMAI CTGCAG 1 cut(s) 1036
BspMI ACCTGC 1 cut(s) 271
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 8 cut(s) 1277, 1335, 1441, 2369, 2960, 3167, 3687, 3700
BspQI GCTCTTC 1 cut(s) 3759
BspT107I GGYRCC 1 cut(s) 1394
BspTNI GGTCTC 3 cut(s) 2531, 2933, 3043
BsrDI GCAATG 3 cut(s) 1398, 2311, 2760
BsrFI RCCGGY 1 cut(s) 1950
BsrGI TGTACA 1 cut(s) 3082
BsrI ACTGG 6 cut(s) 200, 453, 1537, 1847, 2394, 2477
BssAI RCCGGY 1 cut(s) 1950
BssECI CCNNGG 5 cut(s) 184, 267, 879, 1091, 2547
BssSI CACGAG 1 cut(s) 1926
BssT1I CCWWGG 3 cut(s) 184, 267, 2547
Bst2BI CACGAG 1 cut(s) 1926
Bst2UI CCWGG 4 cut(s) 422, 692, 880, 1092
Bst6I CTCTTC 3 cut(s) 1977, 3276, 3759
BstAPI GCANNNNNTGC 3 cut(s) 1031, 1625, 3515
BstAUI TGTACA 1 cut(s) 3082
BstC8I GCNNGC 6 cut(s) 396, 931, 1071, 1393, 3486, 3590
BstDSI CCRYGG 2 cut(s) 184, 267
BstHHI GCGC 1 cut(s) 1000
BstMAI GTCTC 9 cut(s) 71, 509, 673, 2170, 2269, 2531, 2556, 2933, 3043
BstMCI CGRYCG 1 cut(s) 1951
BstNI CCWGG 4 cut(s) 422, 692, 880, 1092
BstNSI RCATGY 3 cut(s) 1009, 1834, 2771
BstSCI CCNGG 5 cut(s) 420, 690, 878, 1090, 1157
BstSFI CTRYAG 2 cut(s) 1032, 1215
BstSLI GKGCMC 1 cut(s) 3520
BstV2I GAAGAC 1 cut(s) 1006
BstX2I RGATCY 4 cut(s) 1327, 1446, 2965, 3692
BstXI CCANNNNNNTGG 4 cut(s) 303, 428, 1544, 2519
BstYI RGATCY 4 cut(s) 1327, 1446, 2965, 3692
Bsu15I ATCGAT 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 1346
BsuI GTATCC 1 cut(s) 1965
BsuRI GGCC 8 cut(s) 314, 797, 1162, 1551, 2261, 3152, 3484, 3588
BsuTUI ATCGAT 1 cut(s) 63
BtgI CCRYGG 2 cut(s) 184, 267
BtrI CACGTC 2 cut(s) 386, 2279
BtsI GCAGTG 5 cut(s) 417, 596, 915, 1240, 3470
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 6 cut(s) 396, 931, 1071, 1393, 3486, 3590
CaiI CAGNNNCTG 5 cut(s) 1040, 1239, 2019, 2573, 3719
CciI TCATGA 2 cut(s) 957, 1852
CfoI GCGC 1 cut(s) 1000
Cfr10I RCCGGY 1 cut(s) 1950
Cfr13I GGNCC 4 cut(s) 1871, 3119, 3151, 3586
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 1 cut(s) 2622
Csp6I GTAC 6 cut(s) 307, 1251, 1507, 2785, 2864, 3083
CspAI ACCGGT 1 cut(s) 1950
CviQI GTAC 6 cut(s) 307, 1251, 1507, 2785, 2864, 3083
DrdI GACNNNNNNGTC 1 cut(s) 1010
DriI GACNNNNNGTC 2 cut(s) 726, 2407
DseDI GACNNNNNNGTC 1 cut(s) 1010
EaeI YGGCCR 1 cut(s) 795
Eam1104I CTCTTC 3 cut(s) 1977, 3276, 3759
Eam1105I GACNNNNNGTC 2 cut(s) 726, 2407
EarI CTCTTC 3 cut(s) 1977, 3276, 3759
EciI GGCGGA 2 cut(s) 710, 1275
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 3 cut(s) 184, 267, 2547
Eco147I AGGCCT 1 cut(s) 3484
Eco24I GRGCYC 2 cut(s) 229, 1941
Eco31I GGTCTC 3 cut(s) 2531, 2933, 3043
Eco32I GATATC 2 cut(s) 209, 3652
Eco47I GGWCC 2 cut(s) 1871, 3119
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 5 cut(s) 1062, 1899, 1996, 3061, 3126
Eco81I CCTNAGG 1 cut(s) 1346
EcoICRI GAGCTC 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 3586
EcoRII CCWGG 4 cut(s) 420, 690, 878, 1090
EcoRV GATATC 2 cut(s) 209, 3652
EcoT14I CCWWGG 3 cut(s) 184, 267, 2547
EcoT22I ATGCAT 1 cut(s) 751
EcoT38I GRGCYC 2 cut(s) 229, 1941
ErhI CCWWGG 3 cut(s) 184, 267, 2547
Esp3I CGTCTC 3 cut(s) 71, 509, 2269
FalI AAGNNNNNCTT 4 cut(s) 2087, 2119, 3255, 3287
FaqI GGGAC 3 cut(s) 178, 1857, 3008
FauNDI CATATG 2 cut(s) 298, 725
FbaI TGATCA 2 cut(s) 465, 1056
FriOI GRGCYC 2 cut(s) 229, 1941
FspBI CTAG 6 cut(s) 395, 489, 678, 830, 1265, 3465
GlaI GCGC 1 cut(s) 999
GsaI CCCAGC 1 cut(s) 1205
GsuI CTGGAG 2 cut(s) 1566, 2494
HaeIII GGCC 8 cut(s) 314, 797, 1162, 1551, 2261, 3152, 3484, 3588
HapII CCGG 7 cut(s) 329, 471, 1001, 1159, 1786, 1951, 2404
HgaI GACGC 1 cut(s) 2622
HhaI GCGC 1 cut(s) 1000
Hin6I GCGC 1 cut(s) 998
HinP1I GCGC 1 cut(s) 998
HincII GTYRAC 1 cut(s) 2470
HindII GTYRAC 1 cut(s) 2470
HpaII CCGG 7 cut(s) 329, 471, 1001, 1159, 1786, 1951, 2404
HphI GGTGA 9 cut(s) 460, 1066, 1080, 1775, 1902, 2173, 2344, 3559, 3686
Hpy166II GTNNAC 5 cut(s) 1141, 2470, 2787, 2886, 3083
Hpy8I GTNNAC 5 cut(s) 1141, 2470, 2787, 2886, 3083
Hpy99I CGWCG 1 cut(s) 137
HpyCH4IV ACGT 6 cut(s) 101, 167, 385, 518, 2278, 3027
HpySE526I ACGT 6 cut(s) 101, 167, 385, 518, 2278, 3027
HspAI GCGC 1 cut(s) 998
Ksp22I TGATCA 2 cut(s) 465, 1056
LguI GCTCTTC 1 cut(s) 3759
LmnI GCTCC 7 cut(s) 638, 974, 1361, 1788, 1936, 3128, 3287
MaeI CTAG 6 cut(s) 395, 489, 678, 830, 1265, 3465
MaeII ACGT 6 cut(s) 101, 167, 385, 518, 2278, 3027
MaeIII GTNAC 4 cut(s) 479, 865, 913, 3058
MfeI CAATTG 1 cut(s) 1665
MflI RGATCY 4 cut(s) 1327, 1446, 2965, 3692
MhlI GDGCHC 7 cut(s) 229, 417, 1630, 1941, 2284, 2925, 3520
MlsI TGGCCA 1 cut(s) 797
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 5 cut(s) 1542, 1628, 1865, 2558, 2615
MmeI TCCRAC 6 cut(s) 184, 328, 736, 823, 2230, 3627
Mox20I TGGCCA 1 cut(s) 797
Mph1103I ATGCAT 1 cut(s) 751
MroXI GAANNNNTTC 2 cut(s) 3074, 3139
MscI TGGCCA 1 cut(s) 797
MseI TTAA 6 cut(s) 273, 449, 1728, 1827, 2385, 3036
MslI CAYNNNNRTG 4 cut(s) 301, 2148, 2378, 2918
Msp20I TGGCCA 1 cut(s) 797
MspA1I CMGCKG 2 cut(s) 953, 2570
MspI CCGG 7 cut(s) 329, 471, 1001, 1159, 1786, 1951, 2404
MspR9I CCNGG 5 cut(s) 422, 692, 880, 1092, 1159
MunI CAATTG 1 cut(s) 1665
Mva1269I GAATGC 4 cut(s) 749, 858, 963, 2933
MvaI CCWGG 4 cut(s) 422, 692, 880, 1092
NciI CCSGG 1 cut(s) 1159
NcoI CCATGG 2 cut(s) 184, 267
NdeI CATATG 2 cut(s) 298, 725
NheI GCTAGC 1 cut(s) 394
NlaIV GGNNCC 8 cut(s) 640, 976, 1377, 1396, 1873, 1938, 3587, 3694
NmeAIII GCCGAG 3 cut(s) 198, 650, 746
NmuCI GTSAC 2 cut(s) 865, 913
NsiI ATGCAT 1 cut(s) 751
NspI RCATGY 3 cut(s) 1009, 1834, 2771
PagI TCATGA 2 cut(s) 957, 1852
PaqCI CACCTGC 1 cut(s) 271
PceI AGGCCT 1 cut(s) 3484
PciSI GCTCTTC 1 cut(s) 3759
PctI GAATGC 4 cut(s) 749, 858, 963, 2933
PdmI GAANNNNTTC 2 cut(s) 3074, 3139
PflMI CCANNNNNTGG 1 cut(s) 190
PinAI ACCGGT 1 cut(s) 1950
PleI GAGTC 5 cut(s) 1541, 1628, 1864, 2558, 2614
PpsI GAGTC 5 cut(s) 1541, 1628, 1864, 2558, 2614
PsiI TTATAA 1 cut(s) 2120
Psp124BI GAGCTC 1 cut(s) 229
Psp1406I AACGTT 2 cut(s) 101, 3027
Psp6I CCWGG 4 cut(s) 420, 690, 878, 1090
PspFI CCCAGC 1 cut(s) 1201
PspGI CCWGG 4 cut(s) 420, 690, 878, 1090
PspN4I GGNNCC 8 cut(s) 640, 976, 1377, 1396, 1873, 1938, 3587, 3694
PspPI GGNCC 4 cut(s) 1871, 3119, 3151, 3586
PstI CTGCAG 1 cut(s) 1036
PstNI CAGNNNCTG 5 cut(s) 1040, 1239, 2019, 2573, 3719
PsuI RGATCY 4 cut(s) 1327, 1446, 2965, 3692
PvuII CAGCTG 1 cut(s) 2570
RsaI GTAC 6 cut(s) 308, 1252, 1508, 2786, 2865, 3084
RsaNI GTAC 6 cut(s) 307, 1251, 1507, 2785, 2864, 3083
RseI CAYNNNNRTG 4 cut(s) 301, 2148, 2378, 2918
SacI GAGCTC 1 cut(s) 229
SapI GCTCTTC 1 cut(s) 3759
SaqAI TTAA 6 cut(s) 273, 449, 1728, 1827, 2385, 3036
Sau96I GGNCC 4 cut(s) 1871, 3119, 3151, 3586
ScaI AGTACT 2 cut(s) 1252, 1508
SchI GAGTC 5 cut(s) 1542, 1628, 1865, 2558, 2615
ScrFI CCNGG 5 cut(s) 422, 692, 880, 1092, 1159
SduI GDGCHC 7 cut(s) 229, 417, 1630, 1941, 2284, 2925, 3520
SfcI CTRYAG 2 cut(s) 1032, 1215
SinI GGWCC 2 cut(s) 1871, 3119
SmiMI CAYNNNNRTG 4 cut(s) 301, 2148, 2378, 2918
SmlI CTYRAG 2 cut(s) 1586, 2356
SmoI CTYRAG 2 cut(s) 1586, 2356
SpeI ACTAGT 2 cut(s) 488, 1264
SseBI AGGCCT 1 cut(s) 3484
SsiI CCGC 8 cut(s) 695, 933, 951, 1286, 1403, 1745, 2523, 2950
SspI AATATT 1 cut(s) 2174
SspMI CTAG 6 cut(s) 395, 489, 678, 830, 1265, 3465
SstI GAGCTC 1 cut(s) 229
StuI AGGCCT 1 cut(s) 3484
StyD4I CCNGG 5 cut(s) 420, 690, 878, 1090, 1157
StyI CCWWGG 3 cut(s) 184, 267, 2547
TaiI ACGT 6 cut(s) 104, 170, 388, 521, 2281, 3030
TaqI TCGA 6 cut(s) 63, 231, 438, 1859, 2816, 2937
TaqII GACCGA 1 cut(s) 3107
TatI WGTACW 3 cut(s) 1250, 1506, 3082
TauI GCSGC 1 cut(s) 953
Tru1I TTAA 6 cut(s) 273, 449, 1728, 1827, 2385, 3036
Tru9I TTAA 6 cut(s) 273, 449, 1728, 1827, 2385, 3036
TseFI GTSAC 2 cut(s) 865, 913
Tsp45I GTSAC 2 cut(s) 865, 913
TspGWI ACGGA 1 cut(s) 150
Van91I CCANNNNNTGG 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 1871, 3119
XapI RAATTY 4 cut(s) 1340, 1808, 3017, 3568
XceI RCATGY 3 cut(s) 1009, 1834, 2771
XcmI CCANNNNNNNNNTGG 1 cut(s) 2458
XmnI GAANNNNTTC 2 cut(s) 3074, 3139
XspI CTAG 6 cut(s) 395, 489, 678, 830, 1265, 3465
ZrmI AGTACT 2 cut(s) 1252, 1508
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.