Rw1G040590

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012655
Physical Location & Seq
Forward (+)
67817915 .. 67822460
4546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040590.1

Sequence Viewer

Length: 3699 bp
ATGCAGAATATGGAAAAGAAGAAACAAGCAATCGATGAGGATGATGAGACGAAGGGAAGCTCATCCGAAACGTTGGGATTCAGTAAGCTGCTAAGCTATGCGGACGGATGGGATTGGATTATGATGGTATTGGGGACGTTGGGTTCTGTTGTCCATGGTATGGCTTTTCCAGTTGGATATCTACTGCTCGGCAGAGCACTCGATGCTTTTGGGAACAATATCAACGACACACCTGCCATGGTTAAAGCACTGAACAAGGTTATTCCATATGTGTGGTACATGGCCTTCGCCACATTTCCGGCTGGAATACTTGAAGTTGGATGCTGGATGTATTCAAGTGAAAGACAAGTGGCACGTCTAAGACTAGCATATCTAAGAGCAGTGCTCAGCCAGGAGGTTGGGGCTTTCGATACAGACTTAACCAGTGGAAAAGTGATCACCGGAATTAGTAACCACACTAGTATCATACACAGTGCAATCGGAGAGACGTTGGGGCATTTTCTGTCAAGTTTCGCAACTTTCTTTTCGGGGATTTTGATTGCTGCAATATGCTGTTGGGAAGTTGCACTGCTTACCTTGTTGGTTGTTCCTTTGATTCTTGCAATCGGAGCCACTTATACCAAGAAGATGAATGCTGTCTCGGCTGCTAGGATGCTTTACCTGGCGGAAGCTACCTCTATGGTAGAACAGACCATATGTCAAATCAAAACAGTATATGCATTCGTTGGAGAAAACTCGGCAATCAAATCTTTCTCAAACTGCATGGCCAAACAGTATTTGCTAAGCAAAGGGGAGGCTCTAGTAAAGGGAGTTGGAACAGGAATGCTTCAATCTGTGACCTTCATTTCCTGGGCTATCATCATTTGGGTTGGTGCTGTTGTAGTCACTGCCAAGAGGGCAAGCGGTGGAGATATTATAGCCGCTGTCATGTGCATTCTCTTTGGAGCCATATCACTCACTTATGCTGCGCCGGACATGCAAGTCTTCAATCAAGCAAAGGCTGCAGGAACTGAAGTTTTCAAGGTGATCAATAGAAAGCCAGCTATAAGTTATGATTCACCAGGGAAGGAACTTGACAAGATTTACGGCAACATTGACATACATGATGTTTACTTTTCCTACCCTTCCCGGCCTGACAGAGCCATCCTTCAAGGCTTTTCATTGTCAATCCCAGCAGGAAAAACTGTAGCCTTTGTGGGCAGCAGTGGCTGTGGAAAGAGTACTATCATCTCACTAGTCGCAAGATTCTATGATCCGCCAAAAGGGAAGATTCTGATTGACAACCACAACATCAAGGATCTTGACTTGAAATTCCTGAGGAAAAACATAGGAGCTGTTTCGCAGGAACCATCACTGTTTGCAGGCACCATTGCGGACAACATGAAAGTCGGTAAGATGGATGCAGAAGATGTAGAGATCCAGAAAGCATCAGTGATGGCAAATGCACACACTTTCATATCTCAACTTCCAGATCAGTACTCCACAGAGGTAGGACAAAGGGGAGTCCAGTTATCTGGAGGCCAGAAGCAGAGAATCGCCATAGCAAGAGCCATTCTCAAGAATCCTCCTATTCTTCTGCTTGATGAGGCAACAAGTGCTCTTGACTCGGAGTCTGAGAAGGTGGTTCAAGAAGCACTTGACAAGGCTATGCAAGGAAGGACAGTCATCTTGATAGCGCACAGACTATCAACTATTGTTAATGCAGATATTATTGCGGTTGTGGAAAATGGACAAGTTTCAGAAACAGGAACTCACCGGAGCTTACTTGAAAGCAGCAAATTCTACAACAACTTATTTAACATGCAGAACCTCAACCCAGTTCATGAGTCGAGAGAAGATGGTCCCTCTGAAGAACATGAAAGCATCCGACAAAAGAACTCACCTGAACAGATAACACGAGCTAAGGAGCCCCGCAGCGACCGGCATCCTAATCAGCCTCCCAAGCAAGATGAAGAGGAAATAAGAAAACAAACCATATTCTTCAGAATCTGGTTTGGCTTGAAAACGAGAGAACTCGTAAAGATTGCTATTGGTTCTTTTGCAGCAGCTTTCTCTGGCATATCAAAGCCTGTCTTTGGGTATTACATTATAACAATAGGAGTAGCATACTACCACCCAGATGCTAAAAGAAAAGTCTCAAAATATTCAATCACCTTCGCTCTAATTGGATTCATTTCATTGTTCTCTCACACCTTGCAACATTACTTCTTTGGAATGGTTGGAGAGAAGGCCATGACAAACCTGAGACGTGCTCTCTATTCAGGTGTGCTACGCAATGAAATTGGATGGTATGAGAACCCTGAGAATGGCATTGGACAGCTCACCTCAAGGATCATCAATGACACTTCAATGGTTAAACTGGTAATTGCTGACCGGATGTCTGTCATTGTTCAGTGCATCTCCTCCATACTGATTGCAACCATTGTGAGCATGGTTGTCAACTGGAGAATGGGGTTGGTAGCTTGGGCTTCTGCCAAGGGTTTTGCAGGAGACTCAGCTGCTGCACATAATGAACTTGTTTCTCTTGCTTCTGAGTCTGCACAAAACATAAGAACCATTGCGTCGTTTTGCCATGAAGATCATATACTCAAAAAAGCCGAAATATCTCTGGAAACACCCAAGAGAATGAGCAGGAAAGAAAGTATCAAGTATGGCATAATTCAGGGAGTTTCTCTTTGCTTATGGAACATTGCACATGCTGTGGCATTGTGGTACACAACAGTTTTGGTTCATAAAAATCAATCGAGCTTCAAAGATGGCATAAGATCATACCAGATTTTCTCTCTCACAGTACCTTCAATCACAGAATTGTGGACATTGATTCCCACTGTAATTTCTGCCATCAATGTACTCACTCCTGCATTCGAGACCCTTGACCGCAAAACTGAAATAGATCCATCTACACCAGAAACTTCAAATCGGGACAGAATCATAGGGAACATTGAATTTCAAAACGTTGAGTTTAATTACCCTTTGAGACCAGAAGTAACTATCCTGAACAACTTCAGTGTACAAATTGAAGCTGGTAAAAAGGTGGCTCTTGTCGGTCCAAGTGGAGCTGGAAAATCTTCAGTTCTGGCCCTTCTGCTAAGATTTTATGATCCCTTGAAAGGTAAGATACTCATTGATGGAAAGGAGATAAGGGAATACAATTTGAGATGGCTGAGAACACAAATAGGGTTGGTGCAACAAGAGCCTCTTCTTTTTAGCTCCTCAATCAGACACAATATCTGCTACGGGAACGAAAGTGCTTCTGAAACTGAGATTGTGGAGGTATCAAAGGAAGCAAACATTGATGAGTTCATAAGTAATTTGCCTGATGGATATGAAACAGTTGTTGGGGAGAAGGGATGCCAACTTTCAGGAGGACAAAAGCAAAGAATAGCCATAGCTAGAACACTGCTAAAGAGGCCTGCAATTTTGCTTCTGGATGAAGCAACAAGTGCCCTTGATGCTGAATCTGAGAAATCTGTGGTGAGTGCATTGGAAGCGATAAATTTGAAAAAGAATGGGGGCCTGCTGTCAAAAACCACACAGATTACAGTTGCACATAGGCTTTCCACAATAATAAGGTCGGATATCATTGTTGTCATGGACAAAGGTGAGATTGTGGAGATGGGATCCCACTCAACCCTAATAACAGCATCTGAGGGAGTTTATTCAAGATTATATCAGATACAGAGCATGGGAGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1232

Amino Acids

135.35

Weight (kDa)

7.58

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 43 - 314 6.1e-44 ABC transporter transmembrane region
SMC_N PF02463 238 - 574 2.1e-06 RecF/RecN/SMC N terminal domain
ABC_tran PF00005 383 - 532 2.6e-34 ABC transporter
ABC_membrane PF00664 677 - 925 2.8e-35 ABC transporter transmembrane region
ABC_tran PF00005 999 - 1148 1.9e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32300 FvH4_7g32320 FvH4_7g33380
malus_domestica MD01G1232000.v1.1 MD01G1232100.v1.1
prunus_persica Prupe.2G322600_v2.0.a1
pyrus_communis pycom01g24050
rosa_chinensis RchiOBHm_Chr1g0383351
rosa_laevigata RLG00000026110
rosa_multiflora Rmu_sc0007173.1_g000013
rosa_roxburghii Rroxscaffold_4G00277370
rosa_rugosa Rorug01G0440700
rosa_samantha Rh1AG466600 Rh1BG423900 Rh1BG424000 Rh1CG437100 Rh1DG456600 Rh1DG456700
rosa_wichuraiana Rw1G040590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2090
AarI CACCTGC 1 cut(s) 241
AasI GACNNNNNNGTC 1 cut(s) 980
Acc36I ACCTGC 1 cut(s) 241
AccB1I GGYRCC 1 cut(s) 1364
AccB7I CCANNNNNTGG 1 cut(s) 160
AciI CCGC 9 cut(s) 101, 665, 903, 921, 1256, 1373, 1715, 1912, 2878
AclI AACGTT 2 cut(s) 71, 2955
AclWI GGATC 8 cut(s) 1247, 1305, 1411, 2339, 2888, 3095, 3615, 3628
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 4 cut(s) 1310, 1778, 2945, 3496
AcuI CTGAAG 5 cut(s) 1032, 1869, 1966, 2989, 3054
AfaI GTAC 7 cut(s) 278, 1222, 1478, 2714, 2793, 2850, 3012
AfiI CCNNNNNNNGG 5 cut(s) 160, 1262, 2075, 2306, 3110
AhdI GACNNNNNGTC 3 cut(s) 696, 1609, 2377
AhlI ACTAGT 2 cut(s) 458, 1234
AjiI CACGTC 2 cut(s) 356, 2249
AjnI CCWGG 4 cut(s) 390, 660, 848, 1060
AjuI GAANNNNNNNTTGG 2 cut(s) 3321, 3353
AloI GAACNNNNNNTCC 2 cut(s) 127, 159
Alw21I GWGCWC 4 cut(s) 199, 387, 1600, 2254
Alw26I GTCTC 8 cut(s) 41, 479, 643, 2140, 2239, 2484, 2861, 2971
AlwI GGATC 8 cut(s) 1247, 1305, 1411, 2339, 2888, 3095, 3615, 3628
AlwNI CAGNNNCTG 5 cut(s) 1010, 1209, 1989, 2501, 3647
AoxI GGCC 8 cut(s) 282, 765, 1130, 1519, 2229, 3078, 3410, 3514
ApoI RAATTY 4 cut(s) 1310, 1778, 2945, 3496
Asp700I GAANNNNTTC 2 cut(s) 3002, 3067
AspLEI GCGC 2 cut(s) 970, 1678
AspS9I GGNCC 4 cut(s) 1841, 3047, 3079, 3514
AsuC2I CCSGG 1 cut(s) 1129
AsuHPI GGTGA 9 cut(s) 430, 1036, 1050, 1745, 1872, 2143, 2314, 3487, 3614
AvaII GGWCC 2 cut(s) 1841, 3047
AxyI CCTNAGG 1 cut(s) 1316
BaeGI GKGCMC 1 cut(s) 3448
BaeI ACNNNNGTAYC 2 cut(s) 445, 478
BalI TGGCCA 1 cut(s) 767
BamHI GGATCC 1 cut(s) 3620
BanI GGYRCC 1 cut(s) 1364
BanII GRGCYC 1 cut(s) 1911
BarI GAAGNNNNNNTAC 4 cut(s) 269, 301, 2568, 2600
BauI CACGAG 1 cut(s) 1896
BbsI GAAGAC 1 cut(s) 976
Bbv12I GWGCWC 4 cut(s) 199, 387, 1600, 2254
BceAI ACGGC 1 cut(s) 1102
BcgI CGANNNNNNTGC 4 cut(s) 181, 215, 215, 249
BciT130I CCWGG 4 cut(s) 392, 662, 850, 1062
BclI TGATCA 2 cut(s) 435, 1026
BcnI CCSGG 1 cut(s) 1129
BcoDI GTCTC 8 cut(s) 41, 479, 643, 2140, 2239, 2484, 2861, 2971
BcuI ACTAGT 2 cut(s) 458, 1234
BfaI CTAG 6 cut(s) 365, 459, 648, 800, 1235, 3393
BfmI CTRYAG 2 cut(s) 1002, 1185
BfuAI ACCTGC 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 896
BlpI GCTNAGC 3 cut(s) 92, 386, 782
BmcAI AGTACT 2 cut(s) 1222, 1478
Bme1390I CCNGG 5 cut(s) 392, 662, 850, 1062, 1129
Bme18I GGWCC 2 cut(s) 1841, 3047
BmeRI GACNNNNNGTC 3 cut(s) 696, 1609, 2377
BmgBI CACGTC 2 cut(s) 356, 2249
BmgT120I GGNCC 4 cut(s) 1841, 3047, 3079, 3514
BmiI GGNNCC 8 cut(s) 610, 946, 1347, 1366, 1843, 1908, 3515, 3622
BmrFI CCNGG 5 cut(s) 392, 662, 850, 1062, 1129
BmrI ACTGGG 1 cut(s) 1811
BmuI ACTGGG 1 cut(s) 1811
BpiI GAAGAC 1 cut(s) 976
BplI GAGNNNNNCTC 6 cut(s) 369, 401, 1539, 1571, 2236, 2268
BpmI CTGGAG 2 cut(s) 1536, 2464
Bpu10I CCTNAGC 1 cut(s) 1902
Bpu1102I GCTNAGC 3 cut(s) 92, 386, 782
BpuEI CTTGAG 2 cut(s) 1541, 2311
BpuMI CCSGG 1 cut(s) 1129
Bsa29I ATCGAT 1 cut(s) 33
BsaI GGTCTC 2 cut(s) 2861, 2971
BsaJI CCNNGG 5 cut(s) 154, 237, 849, 1061, 2475
BsaWI WCCGGW 3 cut(s) 440, 1755, 2373
Bsc4I CCNNNNNNNGG 5 cut(s) 160, 1262, 2075, 2306, 3110
Bse118I RCCGGY 1 cut(s) 1920
Bse1I ACTGG 6 cut(s) 170, 423, 1507, 1817, 2364, 2447
Bse21I CCTNAGG 1 cut(s) 1316
Bse3DI GCAATG 4 cut(s) 1368, 2281, 2556, 2688
BseBI CCWGG 4 cut(s) 392, 662, 850, 1062
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 5 cut(s) 154, 237, 849, 1061, 2475
BseLI CCNNNNNNNGG 5 cut(s) 160, 1262, 2075, 2306, 3110
BseMI GCAATG 4 cut(s) 1368, 2281, 2556, 2688
BseNI ACTGG 6 cut(s) 170, 423, 1507, 1817, 2364, 2447
BseRI GAGGAG 2 cut(s) 2392, 3202
BseSI GKGCMC 1 cut(s) 3448
BseYI CCCAGC 1 cut(s) 1171
BsgI GTGCAG 2 cut(s) 2487, 2523
Bsh1285I CGRYCG 1 cut(s) 1921
BshFI GGCC 8 cut(s) 284, 767, 1132, 1521, 2231, 3080, 3412, 3516
BshNI GGYRCC 1 cut(s) 1364
BshVI ATCGAT 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 1921
BsiHKAI GWGCWC 4 cut(s) 199, 387, 1600, 2254
BsiSI CCGG 7 cut(s) 299, 441, 971, 1129, 1756, 1921, 2374
BslFI GGGAC 3 cut(s) 148, 1827, 2936
BslI CCNNNNNNNGG 5 cut(s) 160, 1262, 2075, 2306, 3110
BsmAI GTCTC 8 cut(s) 41, 479, 643, 2140, 2239, 2484, 2861, 2971
BsmBI CGTCTC 3 cut(s) 41, 479, 2239
BsmFI GGGAC 3 cut(s) 148, 1827, 2936
BsmI GAATGC 5 cut(s) 637, 719, 828, 933, 2861
BsnI GGCC 8 cut(s) 284, 767, 1132, 1521, 2231, 3080, 3412, 3516
Bso31I GGTCTC 2 cut(s) 2861, 2971
Bsp1286I GDGCHC 6 cut(s) 199, 387, 1600, 1911, 2254, 3448
Bsp1407I TGTACA 1 cut(s) 3010
Bsp1720I GCTNAGC 3 cut(s) 92, 386, 782
Bsp19I CCATGG 2 cut(s) 154, 237
BspACI CCGC 9 cut(s) 101, 665, 903, 921, 1256, 1373, 1715, 1912, 2878
BspANI GGCC 8 cut(s) 284, 767, 1132, 1521, 2231, 3080, 3412, 3516
BspDI ATCGAT 1 cut(s) 33
BspHI TCATGA 1 cut(s) 1822
BspLI GGNNCC 8 cut(s) 610, 946, 1347, 1366, 1843, 1908, 3515, 3622
BspMAI CTGCAG 1 cut(s) 1006
BspMI ACCTGC 1 cut(s) 241
BspPI GGATC 8 cut(s) 1247, 1305, 1411, 2339, 2888, 3095, 3615, 3628
BspT107I GGYRCC 1 cut(s) 1364
BspTNI GGTCTC 2 cut(s) 2861, 2971
BsrDI GCAATG 4 cut(s) 1368, 2281, 2556, 2688
BsrFI RCCGGY 1 cut(s) 1920
BsrGI TGTACA 1 cut(s) 3010
BsrI ACTGG 6 cut(s) 170, 423, 1507, 1817, 2364, 2447
BssAI RCCGGY 1 cut(s) 1920
BssECI CCNNGG 5 cut(s) 154, 237, 849, 1061, 2475
BssSI CACGAG 1 cut(s) 1896
BssT1I CCWWGG 3 cut(s) 154, 237, 2475
Bst2BI CACGAG 1 cut(s) 1896
Bst2UI CCWGG 4 cut(s) 392, 662, 850, 1062
Bst6I CTCTTC 3 cut(s) 1947, 3204, 3687
BstAPI GCANNNNNTGC 4 cut(s) 203, 1001, 1595, 3443
BstAUI TGTACA 1 cut(s) 3010
BstC8I GCNNGC 5 cut(s) 901, 1041, 1363, 3414, 3518
BstDSI CCRYGG 2 cut(s) 154, 237
BstHHI GCGC 2 cut(s) 970, 1678
BstMAI GTCTC 8 cut(s) 41, 479, 643, 2140, 2239, 2484, 2861, 2971
BstMCI CGRYCG 1 cut(s) 1921
BstNI CCWGG 4 cut(s) 392, 662, 850, 1062
BstNSI RCATGY 3 cut(s) 979, 1804, 2699
BstSCI CCNGG 5 cut(s) 390, 660, 848, 1060, 1127
BstSFI CTRYAG 2 cut(s) 1002, 1185
BstSLI GKGCMC 1 cut(s) 3448
BstV2I GAAGAC 1 cut(s) 976
BstX2I RGATCY 4 cut(s) 1297, 1416, 2893, 3620
BstXI CCANNNNNNTGG 3 cut(s) 273, 398, 1514
BstYI RGATCY 4 cut(s) 1297, 1416, 2893, 3620
Bsu15I ATCGAT 1 cut(s) 33
Bsu36I CCTNAGG 1 cut(s) 1316
BsuRI GGCC 8 cut(s) 284, 767, 1132, 1521, 2231, 3080, 3412, 3516
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 2 cut(s) 154, 237
BtrI CACGTC 2 cut(s) 356, 2249
BtsI GCAGTG 5 cut(s) 387, 566, 885, 1210, 3398
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 5 cut(s) 901, 1041, 1363, 3414, 3518
CaiI CAGNNNCTG 5 cut(s) 1010, 1209, 1989, 2501, 3647
CciI TCATGA 1 cut(s) 1822
CfoI GCGC 2 cut(s) 970, 1678
Cfr10I RCCGGY 1 cut(s) 1920
Cfr13I GGNCC 4 cut(s) 1841, 3047, 3079, 3514
ClaI ATCGAT 1 cut(s) 33
CseI GACGC 1 cut(s) 2550
Csp6I GTAC 7 cut(s) 277, 1221, 1477, 2713, 2792, 2849, 3011
CviQI GTAC 7 cut(s) 277, 1221, 1477, 2713, 2792, 2849, 3011
DrdI GACNNNNNNGTC 1 cut(s) 980
DriI GACNNNNNGTC 3 cut(s) 696, 1609, 2377
DseDI GACNNNNNNGTC 1 cut(s) 980
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 3 cut(s) 1947, 3204, 3687
Eam1105I GACNNNNNGTC 3 cut(s) 696, 1609, 2377
EarI CTCTTC 3 cut(s) 1947, 3204, 3687
EciI GGCGGA 2 cut(s) 680, 1245
Eco130I CCWWGG 3 cut(s) 154, 237, 2475
Eco147I AGGCCT 1 cut(s) 3412
Eco24I GRGCYC 1 cut(s) 1911
Eco31I GGTCTC 2 cut(s) 2861, 2971
Eco32I GATATC 2 cut(s) 179, 3580
Eco47I GGWCC 2 cut(s) 1841, 3047
Eco57I CTGAAG 5 cut(s) 1032, 1869, 1966, 2989, 3054
Eco81I CCTNAGG 1 cut(s) 1316
EcoO109I RGGNCCY 1 cut(s) 3514
EcoRII CCWGG 4 cut(s) 390, 660, 848, 1060
EcoRV GATATC 2 cut(s) 179, 3580
EcoT14I CCWWGG 3 cut(s) 154, 237, 2475
EcoT22I ATGCAT 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 1911
ErhI CCWWGG 3 cut(s) 154, 237, 2475
Esp3I CGTCTC 3 cut(s) 41, 479, 2239
FalI AAGNNNNNCTT 6 cut(s) 1620, 1652, 2057, 2089, 3183, 3215
FaqI GGGAC 3 cut(s) 148, 1827, 2936
FauI CCCGC 1 cut(s) 1919
FauNDI CATATG 2 cut(s) 268, 695
FbaI TGATCA 2 cut(s) 435, 1026
FriOI GRGCYC 1 cut(s) 1911
FspBI CTAG 6 cut(s) 365, 459, 648, 800, 1235, 3393
GlaI GCGC 2 cut(s) 969, 1677
GsaI CCCAGC 1 cut(s) 1175
GsuI CTGGAG 2 cut(s) 1536, 2464
HaeIII GGCC 8 cut(s) 284, 767, 1132, 1521, 2231, 3080, 3412, 3516
HapII CCGG 7 cut(s) 299, 441, 971, 1129, 1756, 1921, 2374
HgaI GACGC 1 cut(s) 2550
HhaI GCGC 2 cut(s) 970, 1678
Hin6I GCGC 2 cut(s) 968, 1676
HinP1I GCGC 2 cut(s) 968, 1676
HincII GTYRAC 1 cut(s) 2440
HindII GTYRAC 1 cut(s) 2440
HpaII CCGG 7 cut(s) 299, 441, 971, 1129, 1756, 1921, 2374
HphI GGTGA 9 cut(s) 430, 1036, 1050, 1745, 1872, 2143, 2314, 3487, 3614
Hpy166II GTNNAC 5 cut(s) 1111, 2440, 2715, 2814, 3011
Hpy8I GTNNAC 5 cut(s) 1111, 2440, 2715, 2814, 3011
Hpy99I CGWCG 1 cut(s) 2566
HpyCH4IV ACGT 6 cut(s) 71, 137, 355, 488, 2248, 2955
HpySE526I ACGT 6 cut(s) 71, 137, 355, 488, 2248, 2955
HspAI GCGC 2 cut(s) 968, 1676
Ksp22I TGATCA 2 cut(s) 435, 1026
LmnI GCTCC 7 cut(s) 608, 944, 1331, 1758, 1906, 3056, 3215
MaeI CTAG 6 cut(s) 365, 459, 648, 800, 1235, 3393
MaeII ACGT 6 cut(s) 71, 137, 355, 488, 2248, 2955
MaeIII GTNAC 4 cut(s) 449, 835, 883, 2986
MflI RGATCY 4 cut(s) 1297, 1416, 2893, 3620
MhlI GDGCHC 6 cut(s) 199, 387, 1600, 1911, 2254, 3448
MlsI TGGCCA 1 cut(s) 767
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 6 cut(s) 1512, 1598, 1619, 1835, 2486, 2543
MmeI TCCRAC 7 cut(s) 154, 298, 706, 793, 1891, 2200, 3555
Mox20I TGGCCA 1 cut(s) 767
Mph1103I ATGCAT 1 cut(s) 721
MroXI GAANNNNTTC 2 cut(s) 3002, 3067
MscI TGGCCA 1 cut(s) 767
MseI TTAA 6 cut(s) 243, 419, 1698, 1797, 2355, 2964
MslI CAYNNNNRTG 3 cut(s) 271, 2118, 2348
Msp20I TGGCCA 1 cut(s) 767
MspA1I CMGCKG 2 cut(s) 923, 2498
MspI CCGG 7 cut(s) 299, 441, 971, 1129, 1756, 1921, 2374
MspR9I CCNGG 5 cut(s) 392, 662, 850, 1062, 1129
Mva1269I GAATGC 5 cut(s) 637, 719, 828, 933, 2861
MvaI CCWGG 4 cut(s) 392, 662, 850, 1062
NciI CCSGG 1 cut(s) 1129
NcoI CCATGG 2 cut(s) 154, 237
NdeI CATATG 2 cut(s) 268, 695
NlaIV GGNNCC 8 cut(s) 610, 946, 1347, 1366, 1843, 1908, 3515, 3622
NmeAIII GCCGAG 3 cut(s) 168, 620, 716
NmuCI GTSAC 2 cut(s) 835, 883
NsiI ATGCAT 1 cut(s) 721
NspI RCATGY 3 cut(s) 979, 1804, 2699
PagI TCATGA 1 cut(s) 1822
PaqCI CACCTGC 1 cut(s) 241
PceI AGGCCT 1 cut(s) 3412
PctI GAATGC 5 cut(s) 637, 719, 828, 933, 2861
PdmI GAANNNNTTC 2 cut(s) 3002, 3067
PflMI CCANNNNNTGG 1 cut(s) 160
PleI GAGTC 6 cut(s) 1511, 1598, 1618, 1834, 2486, 2542
PpsI GAGTC 6 cut(s) 1511, 1598, 1618, 1834, 2486, 2542
PsiI TTATAA 1 cut(s) 2090
Psp1406I AACGTT 2 cut(s) 71, 2955
Psp6I CCWGG 4 cut(s) 390, 660, 848, 1060
PspFI CCCAGC 1 cut(s) 1171
PspGI CCWGG 4 cut(s) 390, 660, 848, 1060
PspN4I GGNNCC 8 cut(s) 610, 946, 1347, 1366, 1843, 1908, 3515, 3622
PspPI GGNCC 4 cut(s) 1841, 3047, 3079, 3514
PstI CTGCAG 1 cut(s) 1006
PstNI CAGNNNCTG 5 cut(s) 1010, 1209, 1989, 2501, 3647
PsuI RGATCY 4 cut(s) 1297, 1416, 2893, 3620
PvuII CAGCTG 1 cut(s) 2498
RsaI GTAC 7 cut(s) 278, 1222, 1478, 2714, 2793, 2850, 3012
RsaNI GTAC 7 cut(s) 277, 1221, 1477, 2713, 2792, 2849, 3011
RseI CAYNNNNRTG 3 cut(s) 271, 2118, 2348
SaqAI TTAA 6 cut(s) 243, 419, 1698, 1797, 2355, 2964
Sau96I GGNCC 4 cut(s) 1841, 3047, 3079, 3514
ScaI AGTACT 2 cut(s) 1222, 1478
SchI GAGTC 6 cut(s) 1512, 1598, 1619, 1835, 2486, 2543
ScrFI CCNGG 5 cut(s) 392, 662, 850, 1062, 1129
SduI GDGCHC 6 cut(s) 199, 387, 1600, 1911, 2254, 3448
SfcI CTRYAG 2 cut(s) 1002, 1185
SinI GGWCC 2 cut(s) 1841, 3047
SmiMI CAYNNNNRTG 3 cut(s) 271, 2118, 2348
SmlI CTYRAG 2 cut(s) 1556, 2326
SmoI CTYRAG 2 cut(s) 1556, 2326
SpeI ACTAGT 2 cut(s) 458, 1234
SseBI AGGCCT 1 cut(s) 3412
SsiI CCGC 9 cut(s) 101, 665, 903, 921, 1256, 1373, 1715, 1912, 2878
SspI AATATT 1 cut(s) 2144
SspMI CTAG 6 cut(s) 365, 459, 648, 800, 1235, 3393
StuI AGGCCT 1 cut(s) 3412
StyD4I CCNGG 5 cut(s) 390, 660, 848, 1060, 1127
StyI CCWWGG 3 cut(s) 154, 237, 2475
TaiI ACGT 6 cut(s) 74, 140, 358, 491, 2251, 2958
TaqI TCGA 6 cut(s) 33, 201, 408, 1829, 2744, 2865
TaqII GACCGA 1 cut(s) 3035
TatI WGTACW 4 cut(s) 1220, 1476, 2848, 3010
TauI GCSGC 1 cut(s) 923
Tru1I TTAA 6 cut(s) 243, 419, 1698, 1797, 2355, 2964
Tru9I TTAA 6 cut(s) 243, 419, 1698, 1797, 2355, 2964
TseFI GTSAC 2 cut(s) 835, 883
Tsp45I GTSAC 2 cut(s) 835, 883
TspGWI ACGGA 1 cut(s) 120
Van91I CCANNNNNTGG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 1841, 3047
XapI RAATTY 4 cut(s) 1310, 1778, 2945, 3496
XceI RCATGY 3 cut(s) 979, 1804, 2699
XcmI CCANNNNNNNNNTGG 1 cut(s) 2428
XmnI GAANNNNTTC 2 cut(s) 3002, 3067
XspI CTAG 6 cut(s) 365, 459, 648, 800, 1235, 3393
ZrmI AGTACT 2 cut(s) 1222, 1478
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.